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- # LICENSE HEADER MANAGED BY add-license-header
- #
- # Copyright 2018 Kornia Team
- #
- # Licensed under the Apache License, Version 2.0 (the "License");
- # you may not use this file except in compliance with the License.
- # You may obtain a copy of the License at
- #
- # http://www.apache.org/licenses/LICENSE-2.0
- #
- # Unless required by applicable law or agreed to in writing, software
- # distributed under the License is distributed on an "AS IS" BASIS,
- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- # See the License for the specific language governing permissions and
- # limitations under the License.
- #
- import torch
- import torch.nn.functional as F
- from kornia.core import Tensor
- def connected_components(image: Tensor, num_iterations: int = 100) -> Tensor:
- r"""Compute the Connected-component labelling (CCL) algorithm.
- .. image:: https://github.com/kornia/data/raw/main/cells_segmented.png
- The implementation is an adaptation of the following repository:
- https://gist.github.com/efirdc/5d8bd66859e574c683a504a4690ae8bc
- .. warning::
- This is an experimental API subject to changes and optimization improvements.
- .. note::
- See a working example `here <https://kornia.github.io/tutorials/nbs/connected_components.html>`__.
- Args:
- image: the binarized input image with shape :math:`(*, 1, H, W)`.
- The image must be in floating point with range [0, 1].
- num_iterations: the number of iterations to make the algorithm to converge.
- Return:
- The labels image with the same shape of the input image.
- Example:
- >>> img = torch.rand(2, 1, 4, 5)
- >>> img_labels = connected_components(img, num_iterations=100)
- """
- if not isinstance(image, Tensor):
- raise TypeError(f"Input imagetype is not a Tensor. Got: {type(image)}")
- if not isinstance(num_iterations, int) or num_iterations < 1:
- raise TypeError("Input num_iterations must be a positive integer.")
- if len(image.shape) < 3 or image.shape[-3] != 1:
- raise ValueError(f"Input image shape must be (*,1,H,W). Got: {image.shape}")
- H, W = image.shape[-2:]
- image_view = image.view(-1, 1, H, W)
- # precompute a mask with the valid values
- mask = image_view == 1
- # allocate the output tensors for labels
- B, _, _, _ = image_view.shape
- out = torch.arange(1, B * H * W + 1, device=image.device, dtype=image.dtype).view((-1, 1, H, W))
- out[~mask] = 0
- for _ in range(num_iterations):
- out = F.max_pool2d(out, kernel_size=3, stride=1, padding=1)
- out = torch.mul(out, mask) # mask using element-wise multiplication
- return out.view_as(image)
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