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- # Copyright The Lightning team.
- # Licensed under the Apache License, Version 2.0 (the "License");
- # you may not use this file except in compliance with the License.
- # You may obtain a copy of the License at
- #
- # http://www.apache.org/licenses/LICENSE-2.0
- #
- # Unless required by applicable law or agreed to in writing, software
- # distributed under the License is distributed on an "AS IS" BASIS,
- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- # See the License for the specific language governing permissions and
- # limitations under the License.
- from collections.abc import Sequence
- from typing import Any, Literal, Optional, Union
- import torch
- from torch import Tensor
- from torchmetrics.functional.segmentation.hausdorff_distance import (
- _hausdorff_distance_validate_args,
- hausdorff_distance,
- )
- from torchmetrics.metric import Metric
- from torchmetrics.utilities.imports import _MATPLOTLIB_AVAILABLE
- from torchmetrics.utilities.plot import _AX_TYPE, _PLOT_OUT_TYPE
- if not _MATPLOTLIB_AVAILABLE:
- __doctest_skip__ = ["HausdorffDistance.plot"]
- class HausdorffDistance(Metric):
- r"""Compute the `Hausdorff Distance`_ between two subsets of a metric space for semantic segmentation.
- .. math::
- d_{\Pi}(X,Y) = \max{/sup_{x\in X} {d(x,Y)}, /sup_{y\in Y} {d(X,y)}}
- where :math:`\X, \Y` are two subsets of a metric space with distance metric :math:`d`. The Hausdorff distance is
- the maximum distance from a point in one set to the closest point in the other set. The Hausdorff distance is a
- measure of the degree of mismatch between two sets.
- As input to ``forward`` and ``update`` the metric accepts the following input:
- - ``preds`` (:class:`~torch.Tensor`): An one-hot boolean tensor of shape ``(N, C, ...)`` with ``N`` being
- the number of samples and ``C`` the number of classes. Alternatively, an integer tensor of shape ``(N, ...)``
- can be provided, where the integer values correspond to the class index. The input type can be controlled
- with the ``input_format`` argument.
- - ``target`` (:class:`~torch.Tensor`): An one-hot boolean tensor of shape ``(N, C, ...)`` with ``N`` being
- the number of samples and ``C`` the number of classes. Alternatively, an integer tensor of shape ``(N, ...)``
- can be provided, where the integer values correspond to the class index. The input type can be controlled
- with the ``input_format`` argument.
- As output of ``forward`` and ``compute`` the metric returns the following output:
- - ``hausdorff_distance`` (:class:`~torch.Tensor`): A scalar float tensor with the Hausdorff distance averaged over
- classes and samples
- Args:
- num_classes: number of classes
- include_background: whether to include background class in calculation
- distance_metric: distance metric to calculate surface distance. Choose one of `"euclidean"`,
- `"chessboard"` or `"taxicab"`
- spacing: spacing between pixels along each spatial dimension. If not provided the spacing is assumed to be 1
- directed: whether to calculate directed or undirected Hausdorff distance
- input_format: What kind of input the function receives.
- Choose between ``"one-hot"`` for one-hot encoded tensors, ``"index"`` for index tensors
- or ``"mixed"`` for one one-hot encoded and one index tensor
- kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info.
- Example:
- >>> from torch import randint
- >>> from torchmetrics.segmentation import HausdorffDistance
- >>> preds = randint(0, 2, (4, 5, 16, 16)) # 4 samples, 5 classes, 16x16 prediction
- >>> target = randint(0, 2, (4, 5, 16, 16)) # 4 samples, 5 classes, 16x16 target
- >>> hausdorff_distance = HausdorffDistance(distance_metric="euclidean", num_classes=5)
- >>> hausdorff_distance(preds, target)
- tensor(1.9567)
- """
- is_differentiable: bool = True
- higher_is_better: bool = False
- full_state_update: bool = False
- plot_lower_bound: float = 0.0
- score: Tensor
- total: Tensor
- def __init__(
- self,
- num_classes: int,
- include_background: bool = False,
- distance_metric: Literal["euclidean", "chessboard", "taxicab"] = "euclidean",
- spacing: Optional[Union[Tensor, list[float]]] = None,
- directed: bool = False,
- input_format: Literal["one-hot", "index", "mixed"] = "one-hot",
- **kwargs: Any,
- ) -> None:
- super().__init__(**kwargs)
- _hausdorff_distance_validate_args(
- num_classes, include_background, distance_metric, spacing, directed, input_format
- )
- self.num_classes = num_classes
- self.include_background = include_background
- self.distance_metric = distance_metric
- self.spacing = spacing
- self.directed = directed
- self.input_format = input_format
- self.add_state("score", default=torch.tensor(0.0), dist_reduce_fx="sum")
- self.add_state("total", default=torch.tensor(0), dist_reduce_fx="sum")
- def update(self, preds: Tensor, target: Tensor) -> None:
- """Update state with predictions and targets."""
- score = hausdorff_distance(
- preds,
- target,
- self.num_classes,
- include_background=self.include_background,
- distance_metric=self.distance_metric,
- spacing=self.spacing,
- directed=self.directed,
- input_format=self.input_format,
- )
- self.score += score.sum()
- self.total += score.numel()
- def compute(self) -> Tensor:
- """Compute final Hausdorff distance over states."""
- return self.score / self.total
- def plot(
- self, val: Optional[Union[Tensor, Sequence[Tensor]]] = None, ax: Optional[_AX_TYPE] = None
- ) -> _PLOT_OUT_TYPE:
- """Plot a single or multiple values from the metric.
- Args:
- val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results.
- If no value is provided, will automatically call `metric.compute` and plot that result.
- ax: An matplotlib axis object. If provided will add plot to that axis
- Returns:
- Figure and Axes object
- Raises:
- ModuleNotFoundError:
- If `matplotlib` is not installed
- .. plot::
- :scale: 75
- >>> from torch import randint
- >>> from torchmetrics.segmentation import HausdorffDistance
- >>> preds = randint(0, 2, (4, 5, 16, 16)) # 4 samples, 5 classes, 16x16 prediction
- >>> target = randint(0, 2, (4, 5, 16, 16)) # 4 samples, 5 classes, 16x16 target
- >>> metric = HausdorffDistance(num_classes=5)
- >>> metric.update(preds, target)
- >>> fig_, ax_ = metric.plot()
- """
- return self._plot(val, ax)
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