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- # Copyright The Lightning team.
- #
- # Licensed under the Apache License, Version 2.0 (the "License");
- # you may not use this file except in compliance with the License.
- # You may obtain a copy of the License at
- #
- # http://www.apache.org/licenses/LICENSE-2.0
- #
- # Unless required by applicable law or agreed to in writing, software
- # distributed under the License is distributed on an "AS IS" BASIS,
- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- # See the License for the specific language governing permissions and
- # limitations under the License.
- from collections.abc import Sequence
- from typing import Any, List, Optional, Union
- from torch import Tensor
- from typing_extensions import Literal
- from torchmetrics.functional.regression.kendall import (
- _kendall_corrcoef_compute,
- _kendall_corrcoef_update,
- _MetricVariant,
- _TestAlternative,
- )
- from torchmetrics.metric import Metric
- from torchmetrics.utilities.data import dim_zero_cat
- from torchmetrics.utilities.imports import _MATPLOTLIB_AVAILABLE
- from torchmetrics.utilities.plot import _AX_TYPE, _PLOT_OUT_TYPE
- if not _MATPLOTLIB_AVAILABLE:
- __doctest_skip__ = ["KendallRankCorrCoef.plot"]
- class KendallRankCorrCoef(Metric):
- r"""Compute `Kendall Rank Correlation Coefficient`_.
- .. math::
- tau_a = \frac{C - D}{C + D}
- where :math:`C` represents concordant pairs, :math:`D` stands for discordant pairs.
- .. math::
- tau_b = \frac{C - D}{\sqrt{(C + D + T_{preds}) * (C + D + T_{target})}}
- where :math:`C` represents concordant pairs, :math:`D` stands for discordant pairs and :math:`T` represents
- a total number of ties.
- .. math::
- tau_c = 2 * \frac{C - D}{n^2 * \frac{m - 1}{m}}
- where :math:`C` represents concordant pairs, :math:`D` stands for discordant pairs, :math:`n` is a total number
- of observations and :math:`m` is a ``min`` of unique values in ``preds`` and ``target`` sequence.
- Definitions according to Definition according to `The Treatment of Ties in Ranking Problems`_.
- As input to ``forward`` and ``update`` the metric accepts the following input:
- - ``preds`` (:class:`~torch.Tensor`): Sequence of data in float tensor of either shape ``(N,)`` or ``(N,d)``
- - ``target`` (:class:`~torch.Tensor`): Sequence of data in float tensor of either shape ``(N,)`` or ``(N,d)``
- As output of ``forward`` and ``compute`` the metric returns the following output:
- - ``kendall`` (:class:`~torch.Tensor`): A tensor with the correlation tau statistic,
- and if it is not None, the p-value of corresponding statistical test.
- Args:
- variant: Indication of which variant of Kendall's tau to be used
- t_test: Indication whether to run t-test
- alternative: Alternative hypothesis for t-test. Possible values:
- - 'two-sided': the rank correlation is nonzero
- - 'less': the rank correlation is negative (less than zero)
- - 'greater': the rank correlation is positive (greater than zero)
- num_outputs: Number of outputs in multioutput setting
- kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info.
- Raises:
- ValueError: If ``t_test`` is not of a type bool
- ValueError: If ``t_test=True`` and ``alternative=None``
- Example (single output regression):
- >>> from torch import tensor
- >>> from torchmetrics.regression import KendallRankCorrCoef
- >>> preds = tensor([2.5, 0.0, 2, 8])
- >>> target = tensor([3, -0.5, 2, 1])
- >>> kendall = KendallRankCorrCoef()
- >>> kendall(preds, target)
- tensor(0.3333)
- Example (multi output regression):
- >>> from torchmetrics.regression import KendallRankCorrCoef
- >>> preds = tensor([[2.5, 0.0], [2, 8]])
- >>> target = tensor([[3, -0.5], [2, 1]])
- >>> kendall = KendallRankCorrCoef(num_outputs=2)
- >>> kendall(preds, target)
- tensor([1., 1.])
- Example (single output regression with t-test):
- >>> from torchmetrics.regression import KendallRankCorrCoef
- >>> preds = tensor([2.5, 0.0, 2, 8])
- >>> target = tensor([3, -0.5, 2, 1])
- >>> kendall = KendallRankCorrCoef(t_test=True, alternative='two-sided')
- >>> kendall(preds, target)
- (tensor(0.3333), tensor(0.4969))
- Example (multi output regression with t-test):
- >>> from torchmetrics.regression import KendallRankCorrCoef
- >>> preds = tensor([[2.5, 0.0], [2, 8]])
- >>> target = tensor([[3, -0.5], [2, 1]])
- >>> kendall = KendallRankCorrCoef(t_test=True, alternative='two-sided', num_outputs=2)
- >>> kendall(preds, target)
- (tensor([1., 1.]), tensor([nan, nan]))
- """
- is_differentiable = False
- higher_is_better = None
- full_state_update = True
- plot_lower_bound: float = 0.0
- plot_upper_bound: float = 1.0
- preds: List[Tensor]
- target: List[Tensor]
- def __init__(
- self,
- variant: Literal["a", "b", "c"] = "b",
- t_test: bool = False,
- alternative: Optional[Literal["two-sided", "less", "greater"]] = "two-sided",
- num_outputs: int = 1,
- **kwargs: Any,
- ) -> None:
- super().__init__(**kwargs)
- if not isinstance(t_test, bool):
- raise ValueError(f"Argument `t_test` is expected to be of a type `bool`, but got {type(t_test)}.")
- if t_test and alternative is None:
- raise ValueError("Argument `alternative` is required if `t_test=True` but got `None`.")
- self.variant = _MetricVariant.from_str(str(variant))
- self.alternative = _TestAlternative.from_str(str(alternative)) if t_test else None
- self.num_outputs = num_outputs
- self.add_state("preds", [], dist_reduce_fx="cat")
- self.add_state("target", [], dist_reduce_fx="cat")
- def update(self, preds: Tensor, target: Tensor) -> None:
- """Update variables required to compute Kendall rank correlation coefficient."""
- self.preds, self.target = _kendall_corrcoef_update(
- preds,
- target,
- self.preds,
- self.target,
- num_outputs=self.num_outputs,
- )
- def compute(self) -> Union[Tensor, tuple[Tensor, Tensor]]:
- """Compute Kendall rank correlation coefficient, and optionally p-value of corresponding statistical test."""
- preds = dim_zero_cat(self.preds)
- target = dim_zero_cat(self.target)
- tau, p_value = _kendall_corrcoef_compute(
- preds,
- target,
- self.variant, # type: ignore[arg-type] # todo
- self.alternative, # type: ignore[arg-type] # todo
- )
- if p_value is not None:
- return tau, p_value
- return tau
- def plot(
- self, val: Optional[Union[Tensor, Sequence[Tensor]]] = None, ax: Optional[_AX_TYPE] = None
- ) -> _PLOT_OUT_TYPE:
- """Plot a single or multiple values from the metric.
- Args:
- val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results.
- If no value is provided, will automatically call `metric.compute` and plot that result.
- ax: An matplotlib axis object. If provided will add plot to that axis
- Returns:
- Figure and Axes object
- Raises:
- ModuleNotFoundError:
- If `matplotlib` is not installed
- .. plot::
- :scale: 75
- >>> from torch import randn
- >>> # Example plotting a single value
- >>> from torchmetrics.regression import KendallRankCorrCoef
- >>> metric = KendallRankCorrCoef()
- >>> metric.update(randn(10,), randn(10,))
- >>> fig_, ax_ = metric.plot()
- .. plot::
- :scale: 75
- >>> from torch import randn
- >>> # Example plotting multiple values
- >>> from torchmetrics.regression import KendallRankCorrCoef
- >>> metric = KendallRankCorrCoef()
- >>> values = []
- >>> for _ in range(10):
- ... values.append(metric(randn(10,), randn(10,)))
- >>> fig, ax = metric.plot(values)
- """
- return self._plot(val, ax)
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