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- # Copyright The Lightning team.
- #
- # Licensed under the Apache License, Version 2.0 (the "License");
- # you may not use this file except in compliance with the License.
- # You may obtain a copy of the License at
- #
- # http://www.apache.org/licenses/LICENSE-2.0
- #
- # Unless required by applicable law or agreed to in writing, software
- # distributed under the License is distributed on an "AS IS" BASIS,
- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- # See the License for the specific language governing permissions and
- # limitations under the License.
- from typing import List, Optional, Tuple, Union
- import torch
- from torch import Tensor
- from typing_extensions import Literal
- from torchmetrics.functional.classification.roc import binary_roc, multiclass_roc, multilabel_roc
- from torchmetrics.utilities import rank_zero_warn
- from torchmetrics.utilities.compute import _auc_compute_without_check, _safe_divide
- from torchmetrics.utilities.data import interp
- from torchmetrics.utilities.enums import ClassificationTask
- def _validate_fpr_range(fpr_range: Tuple[float, float]) -> None:
- """Validate the `fpr_range` argument for the logauc metric."""
- if not isinstance(fpr_range, tuple) and not len(fpr_range) == 2:
- raise ValueError(f"The `fpr_range` should be a tuple of two floats, but got {type(fpr_range)}.")
- if not (0 <= fpr_range[0] < fpr_range[1] <= 1):
- raise ValueError(f"The `fpr_range` should be a tuple of two floats in the range [0, 1], but got {fpr_range}.")
- def _binary_logauc_compute(
- fpr: Tensor,
- tpr: Tensor,
- fpr_range: Tuple[float, float] = (0.001, 0.1),
- ) -> Tensor:
- """Compute the logauc score for binary classification tasks."""
- fpr_range = torch.tensor(fpr_range).to(fpr.device)
- if fpr.numel() < 2 or tpr.numel() < 2:
- rank_zero_warn(
- "At least two values on for the fpr and tpr are required to compute the log AUC. Returns 0 score."
- )
- return torch.tensor(0.0, device=fpr.device)
- tpr = torch.cat([tpr, interp(fpr_range, fpr, tpr)]).sort().values
- fpr = torch.cat([fpr, fpr_range]).sort().values
- log_fpr = torch.log10(fpr)
- bounds = torch.log10(fpr_range.detach().clone())
- lower_bound_idx = torch.where(log_fpr == bounds[0])[0][-1]
- upper_bound_idx = torch.where(log_fpr == bounds[1])[0][-1]
- trimmed_log_fpr = log_fpr[lower_bound_idx : upper_bound_idx + 1]
- trimmed_tpr = tpr[lower_bound_idx : upper_bound_idx + 1]
- # compute area and rescale it to the range of fpr
- return _auc_compute_without_check(trimmed_log_fpr, trimmed_tpr, 1.0) / (bounds[1] - bounds[0])
- def _reduce_logauc(
- fpr: Union[Tensor, List[Tensor]],
- tpr: Union[Tensor, List[Tensor]],
- fpr_range: Tuple[float, float] = (0.001, 0.1),
- average: Optional[Literal["macro", "weighted", "none"]] = "macro",
- weights: Optional[Tensor] = None,
- ) -> Tensor:
- """Reduce the logauc score to a single value for multiclass and multilabel classification tasks."""
- scores = []
- for fpr_i, tpr_i in zip(fpr, tpr):
- scores.append(_binary_logauc_compute(fpr_i, tpr_i, fpr_range))
- scores = torch.stack(scores)
- if torch.isnan(scores).any():
- rank_zero_warn(
- "LogAUC score for one or more classes/labels was `nan`. Ignoring these classes in {average}-average."
- )
- idx = ~torch.isnan(scores)
- if average is None or average == "none":
- return scores
- if average == "macro":
- return scores[idx].mean()
- if average == "weighted" and weights is not None:
- weights = _safe_divide(weights[idx], weights[idx].sum())
- return (scores[idx] * weights).sum()
- raise ValueError(f"Got unknown average parameter: {average}. Please choose one of ['macro', 'weighted', 'none'].")
- def binary_logauc(
- preds: Tensor,
- target: Tensor,
- fpr_range: Tuple[float, float] = (0.001, 0.1),
- thresholds: Optional[Union[int, List[float], Tensor]] = None,
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- ) -> Tensor:
- r"""Compute the `Log AUC`_ score for binary classification tasks.
- The score is computed by first computing the ROC curve, which then is interpolated to the specified range of false
- positive rates (FPR) and then the log is taken of the FPR before the area under the curve (AUC) is computed. The
- score is commonly used in applications where the positive and negative are imbalanced and a low false positive rate
- is of high importance.
- Accepts the following input tensors:
- - ``preds`` (float tensor): ``(N, ...)``. Preds should be a tensor containing probabilities or logits for each
- observation. If preds has values outside [0,1] range we consider the input to be logits and will auto apply
- sigmoid per element.
- - ``target`` (int tensor): ``(N, ...)``. Target should be a tensor containing ground truth labels, and therefore
- only contain {0,1} values (except if `ignore_index` is specified). The value 1 always encodes the positive class.
- Additional dimension ``...`` will be flattened into the batch dimension.
- The implementation both supports calculating the metric in a non-binned but accurate version and a binned version
- that is less accurate but more memory efficient. Setting the `thresholds` argument to `None` will activate the
- non-binned version that uses memory of size :math:`\mathcal{O}(n_{samples})` whereas setting the `thresholds`
- argument to either an integer, list or a 1d tensor will use a binned version that uses memory of
- size :math:`\mathcal{O}(n_{thresholds})` (constant memory).
- Args:
- preds: Tensor with predictions
- target: Tensor with ground truth labels
- fpr_range: 2-element tuple with the lower and upper bound of the false positive rate range to compute the log
- AUC score.
- thresholds:
- Can be one of:
- - If set to `None`, will use a non-binned approach where thresholds are dynamically calculated from
- all the data. Most accurate but also most memory consuming approach.
- - If set to an `int` (larger than 1), will use that number of thresholds linearly spaced from
- 0 to 1 as bins for the calculation.
- - If set to an `list` of floats, will use the indicated thresholds in the list as bins for the calculation
- - If set to an 1d `tensor` of floats, will use the indicated thresholds in the tensor as
- bins for the calculation.
- ignore_index:
- Specifies a target value that is ignored and does not contribute to the metric calculation
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- Returns:
- A single scalar with the log auc score
- Example:
- >>> from torchmetrics.functional.classification import binary_logauc
- >>> from torch import tensor
- >>> preds = tensor([0.75, 0.05, 0.05, 0.05, 0.05])
- >>> target = tensor([1, 0, 0, 0, 0])
- >>> binary_logauc(preds, target)
- tensor(1.)
- """
- _validate_fpr_range(fpr_range)
- fpr, tpr, _ = binary_roc(preds, target, thresholds, ignore_index, validate_args)
- return _binary_logauc_compute(fpr, tpr, fpr_range)
- def multiclass_logauc(
- preds: Tensor,
- target: Tensor,
- num_classes: int,
- fpr_range: Tuple[float, float] = (0.001, 0.1),
- average: Optional[Literal["macro", "none"]] = "macro",
- thresholds: Optional[Union[int, List[float], Tensor]] = None,
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- ) -> Tensor:
- r"""Compute the `Log AUC`_ score for multiclass classification tasks.
- The score is computed by first computing the ROC curve, which then is interpolated to the specified range of false
- positive rates (FPR) and then the log is taken of the FPR before the area under the curve (AUC) is computed. The
- score is commonly used in applications where the positive and negative are imbalanced and a low false positive rate
- is of high importance.
- Accepts the following input tensors:
- - ``preds`` (float tensor): ``(N, C, ...)``. Preds should be a tensor containing probabilities or logits for each
- observation. If preds has values outside [0,1] range we consider the input to be logits and will auto apply
- softmax per sample.
- - ``target`` (int tensor): ``(N, ...)``. Target should be a tensor containing ground truth labels, and therefore
- only contain values in the [0, n_classes-1] range (except if `ignore_index` is specified).
- Additional dimension ``...`` will be flattened into the batch dimension.
- The implementation both supports calculating the metric in a non-binned but accurate version and a binned version
- that is less accurate but more memory efficient. Setting the `thresholds` argument to `None` will activate the
- non-binned version that uses memory of size :math:`\mathcal{O}(n_{samples})` whereas setting the `thresholds`
- argument to either an integer, list or a 1d tensor will use a binned version that uses memory of
- size :math:`\mathcal{O}(n_{thresholds} \times n_{classes})` (constant memory).
- Args:
- preds: Tensor with predictions
- target: Tensor with true labels
- num_classes: Integer specifying the number of classes
- fpr_range: 2-element tuple with the lower and upper bound of the false positive rate range to compute the log
- AUC score.
- thresholds:
- Can be one of:
- - If set to `None`, will use a non-binned approach where thresholds are dynamically calculated from
- all the data. Most accurate but also most memory consuming approach.
- - If set to an `int` (larger than 1), will use that number of thresholds linearly spaced from
- 0 to 1 as bins for the calculation.
- - If set to an `list` of floats, will use the indicated thresholds in the list as bins for the calculation
- - If set to an 1d `tensor` of floats, will use the indicated thresholds in the tensor as
- bins for the calculation.
- average:
- Defines the reduction that is applied over classes. Should be one of the following:
- - ``macro``: Calculate score for each class and average them
- - ``"none"`` or ``None``: calculates score for each class and applies no reduction
- ignore_index:
- Specifies a target value that is ignored and does not contribute to the metric calculation
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- Example:
- >>> from torchmetrics.functional.classification import multiclass_logauc
- >>> preds = torch.tensor([[0.75, 0.05, 0.05, 0.05, 0.05],
- ... [0.05, 0.75, 0.05, 0.05, 0.05],
- ... [0.05, 0.05, 0.75, 0.05, 0.05],
- ... [0.05, 0.05, 0.05, 0.75, 0.05]])
- >>> target = torch.tensor([0, 1, 3, 2])
- >>> multiclass_logauc(preds, target, num_classes=5, average="macro", thresholds=None)
- tensor(0.4000)
- >>> multiclass_logauc(preds, target, num_classes=5, average=None, thresholds=None)
- tensor([1., 1., 0., 0., 0.])
- """
- if validate_args:
- _validate_fpr_range(fpr_range)
- fpr, tpr, _ = multiclass_roc(
- preds, target, num_classes, thresholds, average=None, ignore_index=ignore_index, validate_args=validate_args
- )
- return _reduce_logauc(fpr, tpr, fpr_range, average)
- def multilabel_logauc(
- preds: Tensor,
- target: Tensor,
- num_labels: int,
- fpr_range: Tuple[float, float] = (0.001, 0.1),
- average: Optional[Literal["macro", "none"]] = "macro",
- thresholds: Optional[Union[int, List[float], Tensor]] = None,
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- ) -> Tensor:
- r"""Compute the `Log AUC`_ score for multilabel classification tasks.
- The score is computed by first computing the ROC curve, which then is interpolated to the specified range of false
- positive rates (FPR) and then the log is taken of the FPR before the area under the curve (AUC) is computed. The
- score is commonly used in applications where the positive and negative are imbalanced and a low false positive rate
- is of high importance.
- Accepts the following input tensors:
- - ``preds`` (float tensor): ``(N, C, ...)``. Preds should be a tensor containing probabilities or logits for each
- observation. If preds has values outside [0,1] range we consider the input to be logits and will auto apply
- sigmoid per element.
- - ``target`` (int tensor): ``(N, C, ...)``. Target should be a tensor containing ground truth labels, and therefore
- only contain {0,1} values (except if `ignore_index` is specified).
- Additional dimension ``...`` will be flattened into the batch dimension.
- The implementation both supports calculating the metric in a non-binned but accurate version and a binned version
- that is less accurate but more memory efficient. Setting the `thresholds` argument to `None` will activate the
- non-binned version that uses memory of size :math:`\mathcal{O}(n_{samples})` whereas setting the `thresholds`
- argument to either an integer, list or a 1d tensor will use a binned version that uses memory of
- size :math:`\mathcal{O}(n_{thresholds} \times n_{labels})` (constant memory).
- Args:
- preds: Tensor with predictions
- target: Tensor with true labels
- num_labels: Integer specifying the number of labels
- fpr_range: 2-element tuple with the lower and upper bound of the false positive rate range to compute the log
- AUC score.
- average:
- Defines the reduction that is applied over labels. Should be one of the following:
- - ``macro``: Calculate score for each label and average them
- - ``"none"`` or ``None``: calculates score for each label and applies no reduction
- thresholds:
- Can be one of:
- - If set to `None`, will use a non-binned approach where thresholds are dynamically calculated from
- all the data. Most accurate but also most memory consuming approach.
- - If set to an `int` (larger than 1), will use that number of thresholds linearly spaced from
- 0 to 1 as bins for the calculation.
- - If set to an `list` of floats, will use the indicated thresholds in the list as bins for the calculation
- - If set to an 1d `tensor` of floats, will use the indicated thresholds in the tensor as
- bins for the calculation.
- ignore_index:
- Specifies a target value that is ignored and does not contribute to the metric calculation
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- Example:
- >>> from torchmetrics.functional.classification import multilabel_logauc
- >>> preds = torch.tensor([[0.75, 0.05, 0.35],
- ... [0.45, 0.75, 0.05],
- ... [0.05, 0.55, 0.75],
- ... [0.05, 0.65, 0.05]])
- >>> target = torch.tensor([[1, 0, 1],
- ... [0, 0, 0],
- ... [0, 1, 1],
- ... [1, 1, 1]])
- >>> multilabel_logauc(preds, target, num_labels=3, average="macro", thresholds=None)
- tensor(0.3945)
- >>> multilabel_logauc(preds, target, num_labels=3, average=None, thresholds=None)
- tensor([0.5000, 0.0000, 0.6835])
- """
- fpr, tpr, _ = multilabel_roc(preds, target, num_labels, thresholds, ignore_index, validate_args)
- return _reduce_logauc(fpr, tpr, fpr_range, average=average)
- def logauc(
- preds: Tensor,
- target: Tensor,
- task: Literal["binary", "multiclass", "multilabel"],
- thresholds: Optional[Union[int, List[float], Tensor]] = None,
- num_classes: Optional[int] = None,
- num_labels: Optional[int] = None,
- fpr_range: Tuple[float, float] = (0.001, 0.1),
- average: Optional[Literal["macro", "none"]] = None,
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- ) -> Optional[Tensor]:
- r"""Compute the `Log AUC`_ score for classification tasks.
- The score is computed by first computing the ROC curve, which then is interpolated to the specified range of false
- positive rates (FPR) and then the log is taken of the FPR before the area under the curve (AUC) is computed. The
- score is commonly used in applications where the positive and negative are imbalanced and a low false positive rate
- is of high importance.
- """
- task = ClassificationTask.from_str(task)
- if task == ClassificationTask.BINARY:
- return binary_logauc(preds, target, fpr_range, thresholds, ignore_index, validate_args)
- if task == ClassificationTask.MULTICLASS:
- if not isinstance(num_classes, int):
- raise ValueError(f"`num_classes` is expected to be `int` but `{type(num_classes)} was passed.`")
- return multiclass_logauc(
- preds, target, num_classes, fpr_range, average, thresholds, ignore_index, validate_args
- )
- if task == ClassificationTask.MULTILABEL:
- if not isinstance(num_labels, int):
- raise ValueError(f"`num_labels` is expected to be `int` but `{type(num_labels)} was passed.`")
- return multilabel_logauc(preds, target, num_labels, fpr_range, average, thresholds, ignore_index, validate_args)
- return None
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