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- # Copyright The Lightning team.
- #
- # Licensed under the Apache License, Version 2.0 (the "License");
- # you may not use this file except in compliance with the License.
- # You may obtain a copy of the License at
- #
- # http://www.apache.org/licenses/LICENSE-2.0
- #
- # Unless required by applicable law or agreed to in writing, software
- # distributed under the License is distributed on an "AS IS" BASIS,
- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- # See the License for the specific language governing permissions and
- # limitations under the License.
- from typing import Optional
- import torch
- from torch import Tensor
- from typing_extensions import Literal
- from torchmetrics.functional.classification.confusion_matrix import (
- _binary_confusion_matrix_arg_validation,
- _binary_confusion_matrix_format,
- _binary_confusion_matrix_tensor_validation,
- _binary_confusion_matrix_update,
- _multiclass_confusion_matrix_arg_validation,
- _multiclass_confusion_matrix_format,
- _multiclass_confusion_matrix_tensor_validation,
- _multiclass_confusion_matrix_update,
- _multilabel_confusion_matrix_arg_validation,
- _multilabel_confusion_matrix_format,
- _multilabel_confusion_matrix_tensor_validation,
- _multilabel_confusion_matrix_update,
- )
- from torchmetrics.utilities.compute import _safe_divide
- from torchmetrics.utilities.enums import ClassificationTask
- def _jaccard_index_reduce(
- confmat: Tensor,
- average: Optional[Literal["micro", "macro", "weighted", "none", "binary"]],
- ignore_index: Optional[int] = None,
- zero_division: float = 0.0,
- ) -> Tensor:
- """Perform reduction of an un-normalized confusion matrix into jaccard score.
- Args:
- confmat: tensor with un-normalized confusionmatrix
- average: reduction method
- - ``'binary'``: binary reduction, expects a 2x2 matrix
- - ``'macro'``: Calculate the metric for each class separately, and average the
- metrics across classes (with equal weights for each class).
- - ``'micro'``: Calculate the metric globally, across all samples and classes.
- - ``'weighted'``: Calculate the metric for each class separately, and average the
- metrics across classes, weighting each class by its support (``tp + fn``).
- - ``'none'`` or ``None``: Calculate the metric for each class separately, and return
- the metric for every class.
- ignore_index:
- Specifies a target value that is ignored and does not contribute to the metric calculation
- zero_division:
- Value to replace when there is a division by zero. Should be `0` or `1`.
- """
- allowed_average = ["binary", "micro", "macro", "weighted", "none", None]
- if average not in allowed_average:
- raise ValueError(f"The `average` has to be one of {allowed_average}, got {average}.")
- confmat = confmat.float()
- if average == "binary":
- return _safe_divide(confmat[1, 1], (confmat[0, 1] + confmat[1, 0] + confmat[1, 1]), zero_division=zero_division)
- ignore_index_cond = ignore_index is not None and 0 <= ignore_index < confmat.shape[0]
- multilabel = confmat.ndim == 3
- if multilabel:
- num = confmat[:, 1, 1]
- denom = confmat[:, 1, 1] + confmat[:, 0, 1] + confmat[:, 1, 0]
- else: # multiclass
- num = torch.diag(confmat)
- denom = confmat.sum(0) + confmat.sum(1) - num
- if average == "micro":
- num = num.sum()
- denom = denom.sum() - (denom[ignore_index] if ignore_index_cond else 0.0)
- jaccard = _safe_divide(num, denom, zero_division=zero_division)
- if average is None or average == "none" or average == "micro":
- return jaccard
- if average == "weighted":
- weights = confmat[:, 1, 1] + confmat[:, 1, 0] if confmat.ndim == 3 else confmat.sum(1)
- else:
- weights = torch.ones_like(jaccard)
- if ignore_index_cond:
- weights[ignore_index] = 0.0
- if not multilabel:
- weights[confmat.sum(1) + confmat.sum(0) == 0] = 0.0
- return ((weights * jaccard) / weights.sum()).sum()
- def binary_jaccard_index(
- preds: Tensor,
- target: Tensor,
- threshold: float = 0.5,
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- zero_division: float = 0.0,
- ) -> Tensor:
- r"""Calculate the Jaccard index for binary tasks.
- The `Jaccard index`_ (also known as the intersection over union or jaccard similarity coefficient) is an statistic
- that can be used to determine the similarity and diversity of a sample set. It is defined as the size of the
- intersection divided by the union of the sample sets:
- .. math:: J(A,B) = \frac{|A\cap B|}{|A\cup B|}
- Accepts the following input tensors:
- - ``preds`` (int or float tensor): ``(N, ...)``. If preds is a floating point tensor with values outside
- [0,1] range we consider the input to be logits and will auto apply sigmoid per element. Additionally,
- we convert to int tensor with thresholding using the value in ``threshold``.
- - ``target`` (int tensor): ``(N, ...)``
- Additional dimension ``...`` will be flattened into the batch dimension.
- Args:
- preds: Tensor with predictions
- target: Tensor with true labels
- threshold: Threshold for transforming probability to binary (0,1) predictions
- ignore_index:
- Specifies a target value that is ignored and does not contribute to the metric calculation
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- zero_division:
- Value to replace when there is a division by zero. Should be `0` or `1`.
- Example (preds is int tensor):
- >>> from torch import tensor
- >>> from torchmetrics.functional.classification import binary_jaccard_index
- >>> target = tensor([1, 1, 0, 0])
- >>> preds = tensor([0, 1, 0, 0])
- >>> binary_jaccard_index(preds, target)
- tensor(0.5000)
- Example (preds is float tensor):
- >>> from torchmetrics.functional.classification import binary_jaccard_index
- >>> target = tensor([1, 1, 0, 0])
- >>> preds = tensor([0.35, 0.85, 0.48, 0.01])
- >>> binary_jaccard_index(preds, target)
- tensor(0.5000)
- """
- if validate_args:
- _binary_confusion_matrix_arg_validation(threshold, ignore_index)
- _binary_confusion_matrix_tensor_validation(preds, target, ignore_index)
- preds, target = _binary_confusion_matrix_format(preds, target, threshold, ignore_index)
- confmat = _binary_confusion_matrix_update(preds, target)
- return _jaccard_index_reduce(confmat, average="binary", zero_division=zero_division)
- def _multiclass_jaccard_index_arg_validation(
- num_classes: int,
- ignore_index: Optional[int] = None,
- average: Optional[Literal["micro", "macro", "weighted", "none"]] = None,
- ) -> None:
- _multiclass_confusion_matrix_arg_validation(num_classes, ignore_index)
- allowed_average = ("micro", "macro", "weighted", "none", None)
- if average not in allowed_average:
- raise ValueError(f"Expected argument `average` to be one of {allowed_average}, but got {average}.")
- def multiclass_jaccard_index(
- preds: Tensor,
- target: Tensor,
- num_classes: int,
- average: Optional[Literal["micro", "macro", "weighted", "none"]] = "macro",
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- zero_division: float = 0.0,
- ) -> Tensor:
- r"""Calculate the Jaccard index for multiclass tasks.
- The `Jaccard index`_ (also known as the intersection over union or jaccard similarity coefficient) is an statistic
- that can be used to determine the similarity and diversity of a sample set. It is defined as the size of the
- intersection divided by the union of the sample sets:
- .. math:: J(A,B) = \frac{|A\cap B|}{|A\cup B|}
- Accepts the following input tensors:
- - ``preds``: ``(N, ...)`` (int tensor) or ``(N, C, ..)`` (float tensor). If preds is a floating point
- we apply ``torch.argmax`` along the ``C`` dimension to automatically convert probabilities/logits into
- an int tensor.
- - ``target`` (int tensor): ``(N, ...)``
- Additional dimension ``...`` will be flattened into the batch dimension.
- Args:
- preds: Tensor with predictions
- target: Tensor with true labels
- num_classes: Integer specifying the number of classes
- average:
- Defines the reduction that is applied over labels. Should be one of the following:
- - ``micro``: Sum statistics over all labels
- - ``macro``: Calculate statistics for each label and average them
- - ``weighted``: calculates statistics for each label and computes weighted average using their support
- - ``"none"`` or ``None``: calculates statistic for each label and applies no reduction
- ignore_index:
- Specifies a target value that is ignored and does not contribute to the metric calculation
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- zero_division:
- Value to replace when there is a division by zero. Should be `0` or `1`.
- Example (pred is integer tensor):
- >>> from torch import tensor
- >>> from torchmetrics.functional.classification import multiclass_jaccard_index
- >>> target = tensor([2, 1, 0, 0])
- >>> preds = tensor([2, 1, 0, 1])
- >>> multiclass_jaccard_index(preds, target, num_classes=3)
- tensor(0.6667)
- Example (pred is float tensor):
- >>> from torchmetrics.functional.classification import multiclass_jaccard_index
- >>> target = tensor([2, 1, 0, 0])
- >>> preds = tensor([[0.16, 0.26, 0.58],
- ... [0.22, 0.61, 0.17],
- ... [0.71, 0.09, 0.20],
- ... [0.05, 0.82, 0.13]])
- >>> multiclass_jaccard_index(preds, target, num_classes=3)
- tensor(0.6667)
- """
- if validate_args:
- _multiclass_jaccard_index_arg_validation(num_classes, ignore_index, average)
- _multiclass_confusion_matrix_tensor_validation(preds, target, num_classes, ignore_index)
- preds, target = _multiclass_confusion_matrix_format(preds, target, ignore_index)
- confmat = _multiclass_confusion_matrix_update(preds, target, num_classes)
- return _jaccard_index_reduce(confmat, average=average, ignore_index=ignore_index, zero_division=zero_division)
- def _multilabel_jaccard_index_arg_validation(
- num_labels: int,
- threshold: float = 0.5,
- ignore_index: Optional[int] = None,
- average: Optional[Literal["micro", "macro", "weighted", "none"]] = "macro",
- ) -> None:
- _multilabel_confusion_matrix_arg_validation(num_labels, threshold, ignore_index)
- allowed_average = ("micro", "macro", "weighted", "none", None)
- if average not in allowed_average:
- raise ValueError(f"Expected argument `average` to be one of {allowed_average}, but got {average}.")
- def multilabel_jaccard_index(
- preds: Tensor,
- target: Tensor,
- num_labels: int,
- threshold: float = 0.5,
- average: Optional[Literal["micro", "macro", "weighted", "none"]] = "macro",
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- zero_division: float = 0.0,
- ) -> Tensor:
- r"""Calculate the Jaccard index for multilabel tasks.
- The `Jaccard index`_ (also known as the intersection over union or jaccard similarity coefficient) is an statistic
- that can be used to determine the similarity and diversity of a sample set. It is defined as the size of the
- intersection divided by the union of the sample sets:
- .. math:: J(A,B) = \frac{|A\cap B|}{|A\cup B|}
- Accepts the following input tensors:
- - ``preds`` (int or float tensor): ``(N, C, ...)``. If preds is a floating point tensor with values outside
- [0,1] range we consider the input to be logits and will auto apply sigmoid per element. Additionally,
- we convert to int tensor with thresholding using the value in ``threshold``.
- - ``target`` (int tensor): ``(N, C, ...)``
- Additional dimension ``...`` will be flattened into the batch dimension.
- Args:
- preds: Tensor with predictions
- target: Tensor with true labels
- num_labels: Integer specifying the number of labels
- threshold: Threshold for transforming probability to binary (0,1) predictions
- average:
- Defines the reduction that is applied over labels. Should be one of the following:
- - ``micro``: Sum statistics over all labels
- - ``macro``: Calculate statistics for each label and average them
- - ``weighted``: calculates statistics for each label and computes weighted average using their support
- - ``"none"`` or ``None``: calculates statistic for each label and applies no reduction
- ignore_index:
- Specifies a target value that is ignored and does not contribute to the metric calculation
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- zero_division:
- Value to replace when there is a division by zero. Should be `0` or `1`.
- Example (preds is int tensor):
- >>> from torch import tensor
- >>> from torchmetrics.functional.classification import multilabel_jaccard_index
- >>> target = tensor([[0, 1, 0], [1, 0, 1]])
- >>> preds = tensor([[0, 0, 1], [1, 0, 1]])
- >>> multilabel_jaccard_index(preds, target, num_labels=3)
- tensor(0.5000)
- Example (preds is float tensor):
- >>> from torchmetrics.functional.classification import multilabel_jaccard_index
- >>> target = tensor([[0, 1, 0], [1, 0, 1]])
- >>> preds = tensor([[0.11, 0.22, 0.84], [0.73, 0.33, 0.92]])
- >>> multilabel_jaccard_index(preds, target, num_labels=3)
- tensor(0.5000)
- """
- if validate_args:
- _multilabel_jaccard_index_arg_validation(num_labels, threshold, ignore_index)
- _multilabel_confusion_matrix_tensor_validation(preds, target, num_labels, ignore_index)
- preds, target = _multilabel_confusion_matrix_format(preds, target, num_labels, threshold, ignore_index)
- confmat = _multilabel_confusion_matrix_update(preds, target, num_labels)
- return _jaccard_index_reduce(confmat, average=average, ignore_index=ignore_index, zero_division=zero_division)
- def jaccard_index(
- preds: Tensor,
- target: Tensor,
- task: Literal["binary", "multiclass", "multilabel"],
- threshold: float = 0.5,
- num_classes: Optional[int] = None,
- num_labels: Optional[int] = None,
- average: Optional[Literal["micro", "macro", "weighted", "none"]] = "macro",
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- zero_division: float = 0.0,
- ) -> Tensor:
- r"""Calculate the Jaccard index.
- The `Jaccard index`_ (also known as the intersection over union or jaccard similarity coefficient) is an statistic
- that can be used to determine the similarity and diversity of a sample set. It is defined as the size of the
- intersection divided by the union of the sample sets:
- .. math:: J(A,B) = \frac{|A\cap B|}{|A\cup B|}
- This function is a simple wrapper to get the task specific versions of this metric, which is done by setting the
- ``task`` argument to either ``'binary'``, ``'multiclass'`` or ``'multilabel'``. See the documentation of
- :func:`~torchmetrics.functional.classification.binary_jaccard_index`,
- :func:`~torchmetrics.functional.classification.multiclass_jaccard_index` and
- :func:`~torchmetrics.functional.classification.multilabel_jaccard_index` for
- the specific details of each argument influence and examples.
- Legacy Example:
- >>> from torch import randint, tensor
- >>> target = randint(0, 2, (10, 25, 25))
- >>> pred = tensor(target)
- >>> pred[2:5, 7:13, 9:15] = 1 - pred[2:5, 7:13, 9:15]
- >>> jaccard_index(pred, target, task="multiclass", num_classes=2)
- tensor(0.9660)
- """
- task = ClassificationTask.from_str(task)
- if task == ClassificationTask.BINARY:
- return binary_jaccard_index(preds, target, threshold, ignore_index, validate_args, zero_division)
- if task == ClassificationTask.MULTICLASS:
- if not isinstance(num_classes, int):
- raise ValueError(f"`num_classes` is expected to be `int` but `{type(num_classes)} was passed.`")
- return multiclass_jaccard_index(preds, target, num_classes, average, ignore_index, validate_args, zero_division)
- if task == ClassificationTask.MULTILABEL:
- if not isinstance(num_labels, int):
- raise ValueError(f"`num_labels` is expected to be `int` but `{type(num_labels)} was passed.`")
- return multilabel_jaccard_index(
- preds, target, num_labels, threshold, average, ignore_index, validate_args, zero_division
- )
- raise ValueError(f"Not handled value: {task}")
|