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- # Copyright The Lightning team.
- #
- # Licensed under the Apache License, Version 2.0 (the "License");
- # you may not use this file except in compliance with the License.
- # You may obtain a copy of the License at
- #
- # http://www.apache.org/licenses/LICENSE-2.0
- #
- # Unless required by applicable law or agreed to in writing, software
- # distributed under the License is distributed on an "AS IS" BASIS,
- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- # See the License for the specific language governing permissions and
- # limitations under the License.
- from collections.abc import Sequence
- from typing import Any, Optional, Union
- from torch import Tensor
- from typing_extensions import Literal
- from torchmetrics.classification.base import _ClassificationTaskWrapper
- from torchmetrics.classification.confusion_matrix import (
- BinaryConfusionMatrix,
- MulticlassConfusionMatrix,
- MultilabelConfusionMatrix,
- )
- from torchmetrics.functional.classification.jaccard import (
- _jaccard_index_reduce,
- _multiclass_jaccard_index_arg_validation,
- _multilabel_jaccard_index_arg_validation,
- )
- from torchmetrics.metric import Metric
- from torchmetrics.utilities.enums import ClassificationTask
- from torchmetrics.utilities.imports import _MATPLOTLIB_AVAILABLE
- from torchmetrics.utilities.plot import _AX_TYPE, _PLOT_OUT_TYPE
- if not _MATPLOTLIB_AVAILABLE:
- __doctest_skip__ = ["BinaryJaccardIndex.plot", "MulticlassJaccardIndex.plot", "MultilabelJaccardIndex.plot"]
- class BinaryJaccardIndex(BinaryConfusionMatrix):
- r"""Calculate the Jaccard index for binary tasks.
- The `Jaccard index`_ (also known as the intersection over union or jaccard similarity coefficient) is an statistic
- that can be used to determine the similarity and diversity of a sample set. It is defined as the size of the
- intersection divided by the union of the sample sets:
- .. math:: J(A,B) = \frac{|A\cap B|}{|A\cup B|}
- As input to ``forward`` and ``update`` the metric accepts the following input:
- - ``preds`` (:class:`~torch.Tensor`): A int or float tensor of shape ``(N, ...)``. If preds is a floating point
- tensor with values outside [0,1] range we consider the input to be logits and will auto apply sigmoid per element.
- Additionally, we convert to int tensor with thresholding using the value in ``threshold``.
- - ``target`` (:class:`~torch.Tensor`): An int tensor of shape ``(N, ...)``.
- .. tip::
- Additional dimension ``...`` will be flattened into the batch dimension.
- As output to ``forward`` and ``compute`` the metric returns the following output:
- - ``bji`` (:class:`~torch.Tensor`): A tensor containing the Binary Jaccard Index.
- Args:
- threshold: Threshold for transforming probability to binary (0,1) predictions
- ignore_index:
- Specifies a target value that is ignored and does not contribute to the metric calculation
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- zero_division:
- Value to replace when there is a division by zero. Should be `0` or `1`.
- kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info.
- Example (preds is int tensor):
- >>> from torch import tensor
- >>> from torchmetrics.classification import BinaryJaccardIndex
- >>> target = tensor([1, 1, 0, 0])
- >>> preds = tensor([0, 1, 0, 0])
- >>> metric = BinaryJaccardIndex()
- >>> metric(preds, target)
- tensor(0.5000)
- Example (preds is float tensor):
- >>> from torchmetrics.classification import BinaryJaccardIndex
- >>> target = tensor([1, 1, 0, 0])
- >>> preds = tensor([0.35, 0.85, 0.48, 0.01])
- >>> metric = BinaryJaccardIndex()
- >>> metric(preds, target)
- tensor(0.5000)
- """
- is_differentiable: bool = False
- higher_is_better: bool = True
- full_state_update: bool = False
- plot_lower_bound: float = 0.0
- plot_upper_bound: float = 1.0
- def __init__(
- self,
- threshold: float = 0.5,
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- zero_division: float = 0,
- **kwargs: Any,
- ) -> None:
- super().__init__(
- threshold=threshold, ignore_index=ignore_index, normalize=None, validate_args=validate_args, **kwargs
- )
- self.zero_division = zero_division
- def compute(self) -> Tensor:
- """Compute metric."""
- return _jaccard_index_reduce(self.confmat, average="binary", zero_division=self.zero_division)
- def plot( # type: ignore[override]
- self, val: Optional[Union[Tensor, Sequence[Tensor]]] = None, ax: Optional[_AX_TYPE] = None
- ) -> _PLOT_OUT_TYPE:
- """Plot a single or multiple values from the metric.
- Args:
- val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results.
- If no value is provided, will automatically call `metric.compute` and plot that result.
- ax: An matplotlib axis object. If provided will add plot to that axis
- Returns:
- Figure object and Axes object
- Raises:
- ModuleNotFoundError:
- If `matplotlib` is not installed
- .. plot::
- :scale: 75
- >>> # Example plotting a single value
- >>> from torch import rand, randint
- >>> from torchmetrics.classification import BinaryJaccardIndex
- >>> metric = BinaryJaccardIndex()
- >>> metric.update(rand(10), randint(2,(10,)))
- >>> fig_, ax_ = metric.plot()
- .. plot::
- :scale: 75
- >>> # Example plotting multiple values
- >>> from torch import rand, randint
- >>> from torchmetrics.classification import BinaryJaccardIndex
- >>> metric = BinaryJaccardIndex()
- >>> values = [ ]
- >>> for _ in range(10):
- ... values.append(metric(rand(10), randint(2,(10,))))
- >>> fig_, ax_ = metric.plot(values)
- """
- return self._plot(val, ax)
- class MulticlassJaccardIndex(MulticlassConfusionMatrix):
- r"""Calculate the Jaccard index for multiclass tasks.
- The `Jaccard index`_ (also known as the intersection over union or jaccard similarity coefficient) is an statistic
- that can be used to determine the similarity and diversity of a sample set. It is defined as the size of the
- intersection divided by the union of the sample sets:
- .. math:: J(A,B) = \frac{|A\cap B|}{|A\cup B|}
- As input to ``forward`` and ``update`` the metric accepts the following input:
- - ``preds`` (:class:`~torch.Tensor`): A int tensor of shape ``(N, ...)`` or float tensor of shape ``(N, C, ..)``.
- If preds is a floating point we apply ``torch.argmax`` along the ``C`` dimension to automatically convert
- probabilities/logits into an int tensor.
- - ``target`` (:class:`~torch.Tensor`): An int tensor of shape ``(N, ...)``.
- .. tip::
- Additional dimension ``...`` will be flattened into the batch dimension.
- As output to ``forward`` and ``compute`` the metric returns the following output:
- - ``mcji`` (:class:`~torch.Tensor`): A tensor containing the Multi-class Jaccard Index.
- Args:
- num_classes: Integer specifying the number of classes
- ignore_index:
- Specifies a target value that is ignored and does not contribute to the metric calculation
- average:
- Defines the reduction that is applied over labels. Should be one of the following:
- - ``micro``: Sum statistics over all labels
- - ``macro``: Calculate statistics for each label and average them
- - ``weighted``: calculates statistics for each label and computes weighted average using their support
- - ``"none"`` or ``None``: calculates statistic for each label and applies no reduction
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- zero_division:
- Value to replace when there is a division by zero. Should be `0` or `1`.
- kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info.
- Example (pred is integer tensor):
- >>> from torch import tensor
- >>> from torchmetrics.classification import MulticlassJaccardIndex
- >>> target = tensor([2, 1, 0, 0])
- >>> preds = tensor([2, 1, 0, 1])
- >>> metric = MulticlassJaccardIndex(num_classes=3)
- >>> metric(preds, target)
- tensor(0.6667)
- Example (pred is float tensor):
- >>> from torchmetrics.classification import MulticlassJaccardIndex
- >>> target = tensor([2, 1, 0, 0])
- >>> preds = tensor([[0.16, 0.26, 0.58],
- ... [0.22, 0.61, 0.17],
- ... [0.71, 0.09, 0.20],
- ... [0.05, 0.82, 0.13]])
- >>> metric = MulticlassJaccardIndex(num_classes=3)
- >>> metric(preds, target)
- tensor(0.6667)
- """
- is_differentiable: bool = False
- higher_is_better: bool = True
- full_state_update: bool = False
- plot_lower_bound: float = 0.0
- plot_upper_bound: float = 1.0
- plot_legend_name: str = "Class"
- def __init__(
- self,
- num_classes: int,
- average: Optional[Literal["micro", "macro", "weighted", "none"]] = "macro",
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- zero_division: float = 0,
- **kwargs: Any,
- ) -> None:
- super().__init__(
- num_classes=num_classes, ignore_index=ignore_index, normalize=None, validate_args=False, **kwargs
- )
- if validate_args:
- _multiclass_jaccard_index_arg_validation(num_classes, ignore_index, average)
- self.validate_args = validate_args
- self.average = average
- self.zero_division = zero_division
- def compute(self) -> Tensor:
- """Compute metric."""
- return _jaccard_index_reduce(
- self.confmat, average=self.average, ignore_index=self.ignore_index, zero_division=self.zero_division
- )
- def plot( # type: ignore[override]
- self, val: Optional[Union[Tensor, Sequence[Tensor]]] = None, ax: Optional[_AX_TYPE] = None
- ) -> _PLOT_OUT_TYPE:
- """Plot a single or multiple values from the metric.
- Args:
- val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results.
- If no value is provided, will automatically call `metric.compute` and plot that result.
- ax: An matplotlib axis object. If provided will add plot to that axis
- Returns:
- Figure object and Axes object
- Raises:
- ModuleNotFoundError:
- If `matplotlib` is not installed
- .. plot::
- :scale: 75
- >>> # Example plotting a single value per class
- >>> from torch import randint
- >>> from torchmetrics.classification import MulticlassJaccardIndex
- >>> metric = MulticlassJaccardIndex(num_classes=3, average=None)
- >>> metric.update(randint(3, (20,)), randint(3, (20,)))
- >>> fig_, ax_ = metric.plot()
- .. plot::
- :scale: 75
- >>> # Example plotting a multiple values per class
- >>> from torch import randint
- >>> from torchmetrics.classification import MulticlassJaccardIndex
- >>> metric = MulticlassJaccardIndex(num_classes=3, average=None)
- >>> values = []
- >>> for _ in range(20):
- ... values.append(metric(randint(3, (20,)), randint(3, (20,))))
- >>> fig_, ax_ = metric.plot(values)
- """
- return self._plot(val, ax)
- class MultilabelJaccardIndex(MultilabelConfusionMatrix):
- r"""Calculate the Jaccard index for multilabel tasks.
- The `Jaccard index`_ (also known as the intersection over union or jaccard similarity coefficient) is an statistic
- that can be used to determine the similarity and diversity of a sample set. It is defined as the size of the
- intersection divided by the union of the sample sets:
- .. math:: J(A,B) = \frac{|A\cap B|}{|A\cup B|}
- As input to ``forward`` and ``update`` the metric accepts the following input:
- - ``preds`` (:class:`~torch.Tensor`): A int tensor or float tensor of shape ``(N, C, ...)``. If preds is a
- floating point tensor with values outside [0,1] range we consider the input to be logits and will auto apply
- sigmoid per element. Additionally, we convert to int tensor with thresholding using the value in ``threshold``.
- - ``target`` (:class:`~torch.Tensor`): An int tensor of shape ``(N, C, ...)``
- .. tip::
- Additional dimension ``...`` will be flattened into the batch dimension.
- As output to ``forward`` and ``compute`` the metric returns the following output:
- - ``mlji`` (:class:`~torch.Tensor`): A tensor containing the Multi-label Jaccard Index loss.
- Args:
- num_classes: Integer specifying the number of labels
- threshold: Threshold for transforming probability to binary (0,1) predictions
- ignore_index:
- Specifies a target value that is ignored and does not contribute to the metric calculation
- average:
- Defines the reduction that is applied over labels. Should be one of the following:
- - ``micro``: Sum statistics over all labels
- - ``macro``: Calculate statistics for each label and average them
- - ``weighted``: calculates statistics for each label and computes weighted average using their support
- - ``"none"`` or ``None``: calculates statistic for each label and applies no reduction
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- zero_division:
- Value to replace when there is a division by zero. Should be `0` or `1`.
- kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info.
- Example (preds is int tensor):
- >>> from torch import tensor
- >>> from torchmetrics.classification import MultilabelJaccardIndex
- >>> target = tensor([[0, 1, 0], [1, 0, 1]])
- >>> preds = tensor([[0, 0, 1], [1, 0, 1]])
- >>> metric = MultilabelJaccardIndex(num_labels=3)
- >>> metric(preds, target)
- tensor(0.5000)
- Example (preds is float tensor):
- >>> from torchmetrics.classification import MultilabelJaccardIndex
- >>> target = tensor([[0, 1, 0], [1, 0, 1]])
- >>> preds = tensor([[0.11, 0.22, 0.84], [0.73, 0.33, 0.92]])
- >>> metric = MultilabelJaccardIndex(num_labels=3)
- >>> metric(preds, target)
- tensor(0.5000)
- """
- is_differentiable: bool = False
- higher_is_better: bool = True
- full_state_update: bool = False
- plot_lower_bound: float = 0.0
- plot_upper_bound: float = 1.0
- plot_legend_name: str = "Label"
- def __init__(
- self,
- num_labels: int,
- threshold: float = 0.5,
- average: Optional[Literal["micro", "macro", "weighted", "none"]] = "macro",
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- zero_division: float = 0,
- **kwargs: Any,
- ) -> None:
- super().__init__(
- num_labels=num_labels,
- threshold=threshold,
- ignore_index=ignore_index,
- normalize=None,
- validate_args=False,
- **kwargs,
- )
- if validate_args:
- _multilabel_jaccard_index_arg_validation(num_labels, threshold, ignore_index, average)
- self.validate_args = validate_args
- self.average = average
- self.zero_division = zero_division
- def compute(self) -> Tensor:
- """Compute metric."""
- return _jaccard_index_reduce(self.confmat, average=self.average, zero_division=self.zero_division)
- def plot( # type: ignore[override]
- self, val: Optional[Union[Tensor, Sequence[Tensor]]] = None, ax: Optional[_AX_TYPE] = None
- ) -> _PLOT_OUT_TYPE:
- """Plot a single or multiple values from the metric.
- Args:
- val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results.
- If no value is provided, will automatically call `metric.compute` and plot that result.
- ax: An matplotlib axis object. If provided will add plot to that axis
- Returns:
- Figure and Axes object
- Raises:
- ModuleNotFoundError:
- If `matplotlib` is not installed
- .. plot::
- :scale: 75
- >>> # Example plotting a single value
- >>> from torch import rand, randint
- >>> from torchmetrics.classification import MultilabelJaccardIndex
- >>> metric = MultilabelJaccardIndex(num_labels=3)
- >>> metric.update(randint(2, (20, 3)), randint(2, (20, 3)))
- >>> fig_, ax_ = metric.plot()
- .. plot::
- :scale: 75
- >>> # Example plotting multiple values
- >>> from torch import rand, randint
- >>> from torchmetrics.classification import MultilabelJaccardIndex
- >>> metric = MultilabelJaccardIndex(num_labels=3)
- >>> values = [ ]
- >>> for _ in range(10):
- ... values.append(metric(randint(2, (20, 3)), randint(2, (20, 3))))
- >>> fig_, ax_ = metric.plot(values)
- """
- return self._plot(val, ax)
- class JaccardIndex(_ClassificationTaskWrapper):
- r"""Calculate the Jaccard index for multilabel tasks.
- The `Jaccard index`_ (also known as the intersection over union or jaccard similarity coefficient) is an statistic
- that can be used to determine the similarity and diversity of a sample set. It is defined as the size of the
- intersection divided by the union of the sample sets:
- .. math:: J(A,B) = \frac{|A\cap B|}{|A\cup B|}
- This function is a simple wrapper to get the task specific versions of this metric, which is done by setting the
- ``task`` argument to either ``'binary'``, ``'multiclass'`` or ``'multilabel'``. See the documentation of
- :class:`~torchmetrics.classification.BinaryJaccardIndex`,
- :class:`~torchmetrics.classification.MulticlassJaccardIndex` and
- :class:`~torchmetrics.classification.MultilabelJaccardIndex` for the specific details of each argument influence
- and examples.
- Legacy Example:
- >>> from torch import randint, tensor
- >>> target = randint(0, 2, (10, 25, 25))
- >>> pred = tensor(target)
- >>> pred[2:5, 7:13, 9:15] = 1 - pred[2:5, 7:13, 9:15]
- >>> jaccard = JaccardIndex(task="multiclass", num_classes=2)
- >>> jaccard(pred, target)
- tensor(0.9660)
- """
- def __new__( # type: ignore[misc]
- cls: type["JaccardIndex"],
- task: Literal["binary", "multiclass", "multilabel"],
- threshold: float = 0.5,
- num_classes: Optional[int] = None,
- num_labels: Optional[int] = None,
- average: Optional[Literal["micro", "macro", "weighted", "none"]] = "macro",
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- **kwargs: Any,
- ) -> Metric:
- """Initialize task metric."""
- task = ClassificationTask.from_str(task)
- kwargs.update({"ignore_index": ignore_index, "validate_args": validate_args})
- if task == ClassificationTask.BINARY:
- return BinaryJaccardIndex(threshold, **kwargs)
- if task == ClassificationTask.MULTICLASS:
- if not isinstance(num_classes, int):
- raise ValueError(f"`num_classes` is expected to be `int` but `{type(num_classes)} was passed.`")
- return MulticlassJaccardIndex(num_classes, average, **kwargs)
- if task == ClassificationTask.MULTILABEL:
- if not isinstance(num_labels, int):
- raise ValueError(f"`num_labels` is expected to be `int` but `{type(num_labels)} was passed.`")
- return MultilabelJaccardIndex(num_labels, threshold, average, **kwargs)
- raise ValueError(f"Task {task} not supported!")
|