| 123456789101112131415161718192021222324252627282930313233343536373839404142434445464748495051525354555657585960616263646566676869707172737475767778798081828384858687888990919293949596979899100101102103104105106107108109110111112113114115116117118119120121122123124125126127128129130131132133134135136137138139140141142143144145146147148149150151152153154155156157158159160161162163164165166167168169170171172173174175176177178179180181182183184185186187188189190191192193194195196197198199200201202203204205206207208209210211212213214215216217218219220221222223224225226227228229230231232233234235236237238239240241242243244245246247248249250251252253254255256257258259260261262263264265266267268269270271272273274275276277278279280281282283284285286287288289290291292293294295296297298299300301302303304305306307308309310311312313314315316317318319320321322323324325326327328329330331332333334335336337338339340341342343344345346347348349350351352353354355356357358359360361362363364365366367368369370371372373374375376377378379380381382383384385386387388389390391392393394395396397398399400401402403404405406407408409410411412413414415416417418419420421422423424425426427428429430431432433434435436437438439440441442443444445446447448449450451452453454455456457458459460461462463464465466467468469470471472473474475476477478479480481482483484485486487488489490491492493494495496497498499500501502503504505506507508509510511512513514515516517518519520521522523524525526527528529530531532533534535536537538539540541542543 |
- # Copyright The Lightning team.
- #
- # Licensed under the Apache License, Version 2.0 (the "License");
- # you may not use this file except in compliance with the License.
- # You may obtain a copy of the License at
- #
- # http://www.apache.org/licenses/LICENSE-2.0
- #
- # Unless required by applicable law or agreed to in writing, software
- # distributed under the License is distributed on an "AS IS" BASIS,
- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- # See the License for the specific language governing permissions and
- # limitations under the License.
- from typing import Any, Optional
- import torch
- from torch import Tensor
- from typing_extensions import Literal
- from torchmetrics.classification.base import _ClassificationTaskWrapper
- from torchmetrics.functional.classification.confusion_matrix import (
- _binary_confusion_matrix_arg_validation,
- _binary_confusion_matrix_compute,
- _binary_confusion_matrix_format,
- _binary_confusion_matrix_tensor_validation,
- _binary_confusion_matrix_update,
- _multiclass_confusion_matrix_arg_validation,
- _multiclass_confusion_matrix_compute,
- _multiclass_confusion_matrix_format,
- _multiclass_confusion_matrix_tensor_validation,
- _multiclass_confusion_matrix_update,
- _multilabel_confusion_matrix_arg_validation,
- _multilabel_confusion_matrix_compute,
- _multilabel_confusion_matrix_format,
- _multilabel_confusion_matrix_tensor_validation,
- _multilabel_confusion_matrix_update,
- )
- from torchmetrics.metric import Metric
- from torchmetrics.utilities.enums import ClassificationTask
- from torchmetrics.utilities.imports import _MATPLOTLIB_AVAILABLE
- from torchmetrics.utilities.plot import _AX_TYPE, _CMAP_TYPE, _PLOT_OUT_TYPE, plot_confusion_matrix
- if not _MATPLOTLIB_AVAILABLE:
- __doctest_skip__ = [
- "BinaryConfusionMatrix.plot",
- "MulticlassConfusionMatrix.plot",
- "MultilabelConfusionMatrix.plot",
- ]
- class BinaryConfusionMatrix(Metric):
- r"""Compute the `confusion matrix`_ for binary tasks.
- The confusion matrix :math:`C` is constructed such that :math:`C_{i, j}` is equal to the number of observations
- known to be in class :math:`i` but predicted to be in class :math:`j`. Thus row indices of the confusion matrix
- correspond to the true class labels and column indices correspond to the predicted class labels.
- For binary tasks, the confusion matrix is a 2x2 matrix with the following structure:
- - :math:`C_{0, 0}`: True negatives
- - :math:`C_{0, 1}`: False positives
- - :math:`C_{1, 0}`: False negatives
- - :math:`C_{1, 1}`: True positives
- As input to ``forward`` and ``update`` the metric accepts the following input:
- - ``preds`` (:class:`~torch.Tensor`): An int or float tensor of shape ``(N, ...)``. If preds is a floating point
- tensor with values outside [0,1] range we consider the input to be logits and will auto apply sigmoid per
- element. Additionally, we convert to int tensor with thresholding using the value in ``threshold``.
- - ``target`` (:class:`~torch.Tensor`): An int tensor of shape ``(N, ...)``.
- As output to ``forward`` and ``compute`` the metric returns the following output:
- - ``confusion_matrix`` (:class:`~torch.Tensor`): A tensor containing a ``(2, 2)`` matrix
- Additional dimension ``...`` will be flattened into the batch dimension.
- Args:
- threshold: Threshold for transforming probability to binary (0,1) predictions
- ignore_index:
- Specifies a target value that is ignored and does not contribute to the metric calculation
- normalize: Normalization mode for confusion matrix. Choose from:
- - ``None`` or ``'none'``: no normalization (default)
- - ``'true'``: normalization over the targets (most commonly used)
- - ``'pred'``: normalization over the predictions
- - ``'all'``: normalization over the whole matrix
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info.
- Example (preds is int tensor):
- >>> from torchmetrics.classification import BinaryConfusionMatrix
- >>> target = torch.tensor([1, 1, 0, 0])
- >>> preds = torch.tensor([0, 1, 0, 0])
- >>> bcm = BinaryConfusionMatrix()
- >>> bcm(preds, target)
- tensor([[2, 0],
- [1, 1]])
- Example (preds is float tensor):
- >>> from torchmetrics.classification import BinaryConfusionMatrix
- >>> target = torch.tensor([1, 1, 0, 0])
- >>> preds = torch.tensor([0.35, 0.85, 0.48, 0.01])
- >>> bcm = BinaryConfusionMatrix()
- >>> bcm(preds, target)
- tensor([[2, 0],
- [1, 1]])
- """
- is_differentiable: bool = False
- higher_is_better: Optional[bool] = None
- full_state_update: bool = False
- confmat: Tensor
- def __init__(
- self,
- threshold: float = 0.5,
- ignore_index: Optional[int] = None,
- normalize: Optional[Literal["true", "pred", "all", "none"]] = None,
- validate_args: bool = True,
- **kwargs: Any,
- ) -> None:
- super().__init__(**kwargs)
- if validate_args:
- _binary_confusion_matrix_arg_validation(threshold, ignore_index, normalize)
- self.threshold = threshold
- self.ignore_index = ignore_index
- self.normalize = normalize
- self.validate_args = validate_args
- self.add_state("confmat", torch.zeros(2, 2, dtype=torch.long), dist_reduce_fx="sum")
- def update(self, preds: Tensor, target: Tensor) -> None:
- """Update state with predictions and targets."""
- if self.validate_args:
- _binary_confusion_matrix_tensor_validation(preds, target, self.ignore_index)
- preds, target = _binary_confusion_matrix_format(preds, target, self.threshold, self.ignore_index)
- confmat = _binary_confusion_matrix_update(preds, target)
- self.confmat += confmat
- def compute(self) -> Tensor:
- """Compute confusion matrix."""
- return _binary_confusion_matrix_compute(self.confmat, self.normalize)
- def plot(
- self,
- val: Optional[Tensor] = None,
- ax: Optional[_AX_TYPE] = None,
- add_text: bool = True,
- labels: Optional[list[str]] = None,
- cmap: Optional[_CMAP_TYPE] = None,
- ) -> _PLOT_OUT_TYPE:
- """Plot a single or multiple values from the metric.
- Args:
- val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results.
- If no value is provided, will automatically call `metric.compute` and plot that result.
- ax: An matplotlib axis object. If provided will add plot to that axis
- add_text: if the value of each cell should be added to the plot
- labels: a list of strings, if provided will be added to the plot to indicate the different classes
- cmap: matplotlib colormap to use for the confusion matrix
- https://matplotlib.org/stable/users/explain/colors/colormaps.html
- Returns:
- Figure and Axes object
- Raises:
- ModuleNotFoundError:
- If `matplotlib` is not installed
- .. plot::
- :scale: 75
- >>> from torch import randint
- >>> from torchmetrics.classification import MulticlassConfusionMatrix
- >>> metric = MulticlassConfusionMatrix(num_classes=5)
- >>> metric.update(randint(5, (20,)), randint(5, (20,)))
- >>> fig_, ax_ = metric.plot()
- """
- val = val if val is not None else self.compute()
- if not isinstance(val, Tensor):
- raise TypeError(f"Expected val to be a single tensor but got {val}")
- fig, ax = plot_confusion_matrix(val, ax=ax, add_text=add_text, labels=labels, cmap=cmap)
- return fig, ax
- class MulticlassConfusionMatrix(Metric):
- r"""Compute the `confusion matrix`_ for multiclass tasks.
- The confusion matrix :math:`C` is constructed such that :math:`C_{i, j}` is equal to the number of observations
- known to be in class :math:`i` but predicted to be in class :math:`j`. Thus row indices of the confusion matrix
- correspond to the true class labels and column indices correspond to the predicted class labels.
- For multiclass tasks, the confusion matrix is a NxN matrix, where:
- - :math:`C_{i, i}` represents the number of true positives for class :math:`i`
- - :math:`\sum_{j=1, j\neq i}^N C_{i, j}` represents the number of false negatives for class :math:`i`
- - :math:`\sum_{j=1, j\neq i}^N C_{j, i}` represents the number of false positives for class :math:`i`
- - the sum of the remaining cells in the matrix represents the number of true negatives for class :math:`i`
- As input to ``forward`` and ``update`` the metric accepts the following input:
- - ``preds`` (:class:`~torch.Tensor`): An int or float tensor of shape ``(N, ...)``. If preds is a floating point
- tensor with values outside [0,1] range we consider the input to be logits and will auto apply sigmoid per
- element. Additionally, we convert to int tensor with thresholding using the value in ``threshold``.
- - ``target`` (:class:`~torch.Tensor`): An int tensor of shape ``(N, ...)``.
- As output to ``forward`` and ``compute`` the metric returns the following output:
- - ``confusion_matrix``: [num_classes, num_classes] matrix
- Args:
- num_classes: Integer specifying the number of classes
- ignore_index:
- Specifies a target value that is ignored and does not contribute to the metric calculation
- normalize: Normalization mode for confusion matrix. Choose from:
- - ``None`` or ``'none'``: no normalization (default)
- - ``'true'``: normalization over the targets (most commonly used)
- - ``'pred'``: normalization over the predictions
- - ``'all'``: normalization over the whole matrix
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info.
- Example (pred is integer tensor):
- >>> from torch import tensor
- >>> from torchmetrics.classification import MulticlassConfusionMatrix
- >>> target = tensor([2, 1, 0, 0])
- >>> preds = tensor([2, 1, 0, 1])
- >>> metric = MulticlassConfusionMatrix(num_classes=3)
- >>> metric(preds, target)
- tensor([[1, 1, 0],
- [0, 1, 0],
- [0, 0, 1]])
- Example (pred is float tensor):
- >>> from torchmetrics.classification import MulticlassConfusionMatrix
- >>> target = tensor([2, 1, 0, 0])
- >>> preds = tensor([[0.16, 0.26, 0.58],
- ... [0.22, 0.61, 0.17],
- ... [0.71, 0.09, 0.20],
- ... [0.05, 0.82, 0.13]])
- >>> metric = MulticlassConfusionMatrix(num_classes=3)
- >>> metric(preds, target)
- tensor([[1, 1, 0],
- [0, 1, 0],
- [0, 0, 1]])
- """
- is_differentiable: bool = False
- higher_is_better: Optional[bool] = None
- full_state_update: bool = False
- confmat: Tensor
- def __init__(
- self,
- num_classes: int,
- ignore_index: Optional[int] = None,
- normalize: Optional[Literal["none", "true", "pred", "all"]] = None,
- validate_args: bool = True,
- **kwargs: Any,
- ) -> None:
- super().__init__(**kwargs)
- if validate_args:
- _multiclass_confusion_matrix_arg_validation(num_classes, ignore_index, normalize)
- self.num_classes = num_classes
- self.ignore_index = ignore_index
- self.normalize = normalize
- self.validate_args = validate_args
- self.add_state("confmat", torch.zeros(num_classes, num_classes, dtype=torch.long), dist_reduce_fx="sum")
- def update(self, preds: Tensor, target: Tensor) -> None:
- """Update state with predictions and targets."""
- if self.validate_args:
- _multiclass_confusion_matrix_tensor_validation(preds, target, self.num_classes, self.ignore_index)
- preds, target = _multiclass_confusion_matrix_format(preds, target, self.ignore_index)
- confmat = _multiclass_confusion_matrix_update(preds, target, self.num_classes)
- self.confmat += confmat
- def compute(self) -> Tensor:
- """Compute confusion matrix."""
- return _multiclass_confusion_matrix_compute(self.confmat, self.normalize)
- def plot(
- self,
- val: Optional[Tensor] = None,
- ax: Optional[_AX_TYPE] = None,
- add_text: bool = True,
- labels: Optional[list[str]] = None,
- cmap: Optional[_CMAP_TYPE] = None,
- ) -> _PLOT_OUT_TYPE:
- """Plot a single or multiple values from the metric.
- Args:
- val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results.
- If no value is provided, will automatically call `metric.compute` and plot that result.
- ax: An matplotlib axis object. If provided will add plot to that axis
- add_text: if the value of each cell should be added to the plot
- labels: a list of strings, if provided will be added to the plot to indicate the different classes
- cmap: matplotlib colormap to use for the confusion matrix
- https://matplotlib.org/stable/users/explain/colors/colormaps.html
- Returns:
- Figure and Axes object
- Raises:
- ModuleNotFoundError:
- If `matplotlib` is not installed
- .. plot::
- :scale: 75
- >>> from torch import randint
- >>> from torchmetrics.classification import MulticlassConfusionMatrix
- >>> metric = MulticlassConfusionMatrix(num_classes=5)
- >>> metric.update(randint(5, (20,)), randint(5, (20,)))
- >>> fig_, ax_ = metric.plot()
- """
- val = val if val is not None else self.compute()
- if not isinstance(val, Tensor):
- raise TypeError(f"Expected val to be a single tensor but got {val}")
- fig, ax = plot_confusion_matrix(val, ax=ax, add_text=add_text, labels=labels, cmap=cmap)
- return fig, ax
- class MultilabelConfusionMatrix(Metric):
- r"""Compute the `confusion matrix`_ for multilabel tasks.
- The confusion matrix :math:`C` is constructed such that :math:`C_{i, j}` is equal to the number of observations
- known to be in class :math:`i` but predicted to be in class :math:`j`. Thus row indices of the confusion matrix
- correspond to the true class labels and column indices correspond to the predicted class labels.
- For multilabel tasks, the confusion matrix is a Nx2x2 tensor, where each 2x2 matrix corresponds to the confusion
- for that label. The structure of each 2x2 matrix is as follows:
- - :math:`C_{0, 0}`: True negatives
- - :math:`C_{0, 1}`: False positives
- - :math:`C_{1, 0}`: False negatives
- - :math:`C_{1, 1}`: True positives
- As input to 'update' the metric accepts the following input:
- - ``preds`` (int or float tensor): ``(N, C, ...)``. If preds is a floating point tensor with values outside
- [0,1] range we consider the input to be logits and will auto apply sigmoid per element. Additionally,
- we convert to int tensor with thresholding using the value in ``threshold``.
- - ``target`` (int tensor): ``(N, C, ...)``
- As output of 'compute' the metric returns the following output:
- - ``confusion matrix``: [num_labels,2,2] matrix
- Args:
- num_classes: Integer specifying the number of labels
- threshold: Threshold for transforming probability to binary (0,1) predictions
- ignore_index:
- Specifies a target value that is ignored and does not contribute to the metric calculation
- normalize: Normalization mode for confusion matrix. Choose from:
- - ``None`` or ``'none'``: no normalization (default)
- - ``'true'``: normalization over the targets (most commonly used)
- - ``'pred'``: normalization over the predictions
- - ``'all'``: normalization over the whole matrix
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info.
- Example (preds is int tensor):
- >>> from torch import tensor
- >>> from torchmetrics.classification import MultilabelConfusionMatrix
- >>> target = tensor([[0, 1, 0], [1, 0, 1]])
- >>> preds = tensor([[0, 0, 1], [1, 0, 1]])
- >>> metric = MultilabelConfusionMatrix(num_labels=3)
- >>> metric(preds, target)
- tensor([[[1, 0], [0, 1]],
- [[1, 0], [1, 0]],
- [[0, 1], [0, 1]]])
- Example (preds is float tensor):
- >>> from torchmetrics.classification import MultilabelConfusionMatrix
- >>> target = tensor([[0, 1, 0], [1, 0, 1]])
- >>> preds = tensor([[0.11, 0.22, 0.84], [0.73, 0.33, 0.92]])
- >>> metric = MultilabelConfusionMatrix(num_labels=3)
- >>> metric(preds, target)
- tensor([[[1, 0], [0, 1]],
- [[1, 0], [1, 0]],
- [[0, 1], [0, 1]]])
- """
- is_differentiable: bool = False
- higher_is_better: Optional[bool] = None
- full_state_update: bool = False
- confmat: Tensor
- def __init__(
- self,
- num_labels: int,
- threshold: float = 0.5,
- ignore_index: Optional[int] = None,
- normalize: Optional[Literal["none", "true", "pred", "all"]] = None,
- validate_args: bool = True,
- **kwargs: Any,
- ) -> None:
- super().__init__(**kwargs)
- if validate_args:
- _multilabel_confusion_matrix_arg_validation(num_labels, threshold, ignore_index, normalize)
- self.num_labels = num_labels
- self.threshold = threshold
- self.ignore_index = ignore_index
- self.normalize = normalize
- self.validate_args = validate_args
- self.add_state("confmat", torch.zeros(num_labels, 2, 2, dtype=torch.long), dist_reduce_fx="sum")
- def update(self, preds: Tensor, target: Tensor) -> None:
- """Update state with predictions and targets."""
- if self.validate_args:
- _multilabel_confusion_matrix_tensor_validation(preds, target, self.num_labels, self.ignore_index)
- preds, target = _multilabel_confusion_matrix_format(
- preds, target, self.num_labels, self.threshold, self.ignore_index
- )
- confmat = _multilabel_confusion_matrix_update(preds, target, self.num_labels)
- self.confmat += confmat
- def compute(self) -> Tensor:
- """Compute confusion matrix."""
- return _multilabel_confusion_matrix_compute(self.confmat, self.normalize)
- def plot(
- self,
- val: Optional[Tensor] = None,
- ax: Optional[_AX_TYPE] = None,
- add_text: bool = True,
- labels: Optional[list[str]] = None,
- cmap: Optional[_CMAP_TYPE] = None,
- ) -> _PLOT_OUT_TYPE:
- """Plot a single or multiple values from the metric.
- Args:
- val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results.
- If no value is provided, will automatically call `metric.compute` and plot that result.
- ax: An matplotlib axis object. If provided will add plot to that axis
- add_text: if the value of each cell should be added to the plot
- labels: a list of strings, if provided will be added to the plot to indicate the different classes
- cmap: matplotlib colormap to use for the confusion matrix
- https://matplotlib.org/stable/users/explain/colors/colormaps.html
- Returns:
- Figure and Axes object
- Raises:
- ModuleNotFoundError:
- If `matplotlib` is not installed
- .. plot::
- :scale: 75
- >>> from torch import randint
- >>> from torchmetrics.classification import MulticlassConfusionMatrix
- >>> metric = MulticlassConfusionMatrix(num_classes=5)
- >>> metric.update(randint(5, (20,)), randint(5, (20,)))
- >>> fig_, ax_ = metric.plot()
- """
- val = val if val is not None else self.compute()
- if not isinstance(val, Tensor):
- raise TypeError(f"Expected val to be a single tensor but got {val}")
- fig, ax = plot_confusion_matrix(val, ax=ax, add_text=add_text, labels=labels, cmap=cmap)
- return fig, ax
- class ConfusionMatrix(_ClassificationTaskWrapper):
- r"""Compute the `confusion matrix`_.
- This function is a simple wrapper to get the task specific versions of this metric, which is done by setting the
- ``task`` argument to either ``'binary'``, ``'multiclass'`` or ``'multilabel'``. See the documentation of
- :class:`~torchmetrics.classification.BinaryConfusionMatrix`,
- :class:`~torchmetrics.classification.MulticlassConfusionMatrix` and
- :class:`~torchmetrics.classification.MultilabelConfusionMatrix` for the specific details of each argument influence
- and examples.
- Legacy Example:
- >>> from torch import tensor
- >>> target = tensor([1, 1, 0, 0])
- >>> preds = tensor([0, 1, 0, 0])
- >>> confmat = ConfusionMatrix(task="binary", num_classes=2)
- >>> confmat(preds, target)
- tensor([[2, 0],
- [1, 1]])
- >>> target = tensor([2, 1, 0, 0])
- >>> preds = tensor([2, 1, 0, 1])
- >>> confmat = ConfusionMatrix(task="multiclass", num_classes=3)
- >>> confmat(preds, target)
- tensor([[1, 1, 0],
- [0, 1, 0],
- [0, 0, 1]])
- >>> target = tensor([[0, 1, 0], [1, 0, 1]])
- >>> preds = tensor([[0, 0, 1], [1, 0, 1]])
- >>> confmat = ConfusionMatrix(task="multilabel", num_labels=3)
- >>> confmat(preds, target)
- tensor([[[1, 0], [0, 1]],
- [[1, 0], [1, 0]],
- [[0, 1], [0, 1]]])
- """
- def __new__( # type: ignore[misc]
- cls: type["ConfusionMatrix"],
- task: Literal["binary", "multiclass", "multilabel"],
- threshold: float = 0.5,
- num_classes: Optional[int] = None,
- num_labels: Optional[int] = None,
- normalize: Optional[Literal["true", "pred", "all", "none"]] = None,
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- **kwargs: Any,
- ) -> Metric:
- """Initialize task metric."""
- task = ClassificationTask.from_str(task)
- kwargs.update({"normalize": normalize, "ignore_index": ignore_index, "validate_args": validate_args})
- if task == ClassificationTask.BINARY:
- return BinaryConfusionMatrix(threshold, **kwargs)
- if task == ClassificationTask.MULTICLASS:
- if not isinstance(num_classes, int):
- raise ValueError(f"`num_classes` is expected to be `int` but `{type(num_classes)} was passed.`")
- return MulticlassConfusionMatrix(num_classes, **kwargs)
- if task == ClassificationTask.MULTILABEL:
- if not isinstance(num_labels, int):
- raise ValueError(f"`num_labels` is expected to be `int` but `{type(num_labels)} was passed.`")
- return MultilabelConfusionMatrix(num_labels, threshold, **kwargs)
- raise ValueError(f"Task {task} not supported!")
|