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- # Copyright The Lightning team.
- #
- # Licensed under the Apache License, Version 2.0 (the "License");
- # you may not use this file except in compliance with the License.
- # You may obtain a copy of the License at
- #
- # http://www.apache.org/licenses/LICENSE-2.0
- #
- # Unless required by applicable law or agreed to in writing, software
- # distributed under the License is distributed on an "AS IS" BASIS,
- # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- # See the License for the specific language governing permissions and
- # limitations under the License.
- from collections.abc import Sequence
- from typing import Any, Optional, Union
- from torch import Tensor
- from typing_extensions import Literal
- from torchmetrics.classification.base import _ClassificationTaskWrapper
- from torchmetrics.classification.precision_recall_curve import (
- BinaryPrecisionRecallCurve,
- MulticlassPrecisionRecallCurve,
- MultilabelPrecisionRecallCurve,
- )
- from torchmetrics.functional.classification.average_precision import (
- _binary_average_precision_compute,
- _multiclass_average_precision_arg_validation,
- _multiclass_average_precision_compute,
- _multilabel_average_precision_arg_validation,
- _multilabel_average_precision_compute,
- )
- from torchmetrics.metric import Metric
- from torchmetrics.utilities.data import dim_zero_cat
- from torchmetrics.utilities.enums import ClassificationTask
- from torchmetrics.utilities.imports import _MATPLOTLIB_AVAILABLE
- from torchmetrics.utilities.plot import _AX_TYPE, _PLOT_OUT_TYPE
- if not _MATPLOTLIB_AVAILABLE:
- __doctest_skip__ = [
- "BinaryAveragePrecision.plot",
- "MulticlassAveragePrecision.plot",
- "MultilabelAveragePrecision.plot",
- ]
- class BinaryAveragePrecision(BinaryPrecisionRecallCurve):
- r"""Compute the average precision (AP) score for binary tasks.
- The AP score summarizes a precision-recall curve as an weighted mean of precisions at each threshold, with the
- difference in recall from the previous threshold as weight:
- .. math::
- AP = \sum_{n} (R_n - R_{n-1}) P_n
- where :math:`P_n, R_n` is the respective precision and recall at threshold index :math:`n`. This value is
- equivalent to the area under the precision-recall curve (AUPRC).
- As input to ``forward`` and ``update`` the metric accepts the following input:
- - ``preds`` (:class:`~torch.Tensor`): A float tensor of shape ``(N, ...)`` containing probabilities or logits for
- each observation. If preds has values outside [0,1] range we consider the input to be logits and will auto apply
- sigmoid per element.
- - ``target`` (:class:`~torch.Tensor`): An int tensor of shape ``(N, ...)`` containing ground truth labels, and
- therefore only contain {0,1} values (except if `ignore_index` is specified). The value 1 always encodes the
- positive class.
- As output to ``forward`` and ``compute`` the metric returns the following output:
- - ``bap`` (:class:`~torch.Tensor`): A single scalar with the average precision score
- Additional dimension ``...`` will be flattened into the batch dimension.
- The implementation both supports calculating the metric in a non-binned but accurate version and a binned version
- that is less accurate but more memory efficient. Setting the `thresholds` argument to `None` will activate the
- non-binned version that uses memory of size :math:`\mathcal{O}(n_{samples})` whereas setting the `thresholds`
- argument to either an integer, list or a 1d tensor will use a binned version that uses memory of
- size :math:`\mathcal{O}(n_{thresholds})` (constant memory).
- Args:
- thresholds:
- Can be one of:
- - If set to `None`, will use a non-binned approach where thresholds are dynamically calculated from
- all the data. Most accurate but also most memory consuming approach.
- - If set to an `int` (larger than 1), will use that number of thresholds linearly spaced from
- 0 to 1 as bins for the calculation.
- - If set to an `list` of floats, will use the indicated thresholds in the list as bins for the calculation
- - If set to an 1d `tensor` of floats, will use the indicated thresholds in the tensor as
- bins for the calculation.
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info.
- Example:
- >>> from torch import tensor
- >>> from torchmetrics.classification import BinaryAveragePrecision
- >>> preds = tensor([0, 0.5, 0.7, 0.8])
- >>> target = tensor([0, 1, 1, 0])
- >>> metric = BinaryAveragePrecision(thresholds=None)
- >>> metric(preds, target)
- tensor(0.5833)
- >>> bap = BinaryAveragePrecision(thresholds=5)
- >>> bap(preds, target)
- tensor(0.6667)
- """
- is_differentiable: bool = False
- higher_is_better: bool = True
- full_state_update: bool = False
- plot_lower_bound: float = 0.0
- plot_upper_bound: float = 1.0
- def compute(self) -> Tensor: # type: ignore[override]
- """Compute metric."""
- state = (dim_zero_cat(self.preds), dim_zero_cat(self.target)) if self.thresholds is None else self.confmat
- return _binary_average_precision_compute(state, self.thresholds)
- def plot( # type: ignore[override]
- self, val: Optional[Union[Tensor, Sequence[Tensor]]] = None, ax: Optional[_AX_TYPE] = None
- ) -> _PLOT_OUT_TYPE:
- """Plot a single or multiple values from the metric.
- Args:
- val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results.
- If no value is provided, will automatically call `metric.compute` and plot that result.
- ax: An matplotlib axis object. If provided will add plot to that axis
- Returns:
- Figure and Axes object
- Raises:
- ModuleNotFoundError:
- If `matplotlib` is not installed
- .. plot::
- :scale: 75
- >>> # Example plotting a single
- >>> import torch
- >>> from torchmetrics.classification import BinaryAveragePrecision
- >>> metric = BinaryAveragePrecision()
- >>> metric.update(torch.rand(20,), torch.randint(2, (20,)))
- >>> fig_, ax_ = metric.plot()
- .. plot::
- :scale: 75
- >>> # Example plotting multiple values
- >>> import torch
- >>> from torchmetrics.classification import BinaryAveragePrecision
- >>> metric = BinaryAveragePrecision()
- >>> values = [ ]
- >>> for _ in range(10):
- ... values.append(metric(torch.rand(20,), torch.randint(2, (20,))))
- >>> fig_, ax_ = metric.plot(values)
- """
- return self._plot(val, ax)
- class MulticlassAveragePrecision(MulticlassPrecisionRecallCurve):
- r"""Compute the average precision (AP) score for multiclass tasks.
- The AP score summarizes a precision-recall curve as an weighted mean of precisions at each threshold, with the
- difference in recall from the previous threshold as weight:
- .. math::
- AP = \sum_{n} (R_n - R_{n-1}) P_n
- where :math:`P_n, R_n` is the respective precision and recall at threshold index :math:`n`. This value is
- equivalent to the area under the precision-recall curve (AUPRC).
- For multiclass the metric is calculated by iteratively treating each class as the positive class and all other
- classes as the negative, which is referred to as the one-vs-rest approach. One-vs-one is currently not supported by
- this metric. By default the reported metric is then the average over all classes, but this behavior can be changed
- by setting the ``average`` argument.
- As input to ``forward`` and ``update`` the metric accepts the following input:
- - ``preds`` (:class:`~torch.Tensor`): A float tensor of shape ``(N, C, ...)`` containing probabilities or logits
- for each observation. If preds has values outside [0,1] range we consider the input to be logits and will auto
- apply softmax per sample.
- - ``target`` (:class:`~torch.Tensor`): An int tensor of shape ``(N, ...)`` containing ground truth labels, and
- therefore only contain values in the [0, n_classes-1] range (except if `ignore_index` is specified).
- As output to ``forward`` and ``compute`` the metric returns the following output:
- - ``mcap`` (:class:`~torch.Tensor`): If `average=None|"none"` then a 1d tensor of shape (n_classes, ) will be
- returned with AP score per class. If `average="macro"|"weighted"` then a single scalar is returned.
- Additional dimension ``...`` will be flattened into the batch dimension.
- The implementation both supports calculating the metric in a non-binned but accurate version and a binned version
- that is less accurate but more memory efficient. Setting the `thresholds` argument to `None` will activate the
- non-binned version that uses memory of size :math:`\mathcal{O}(n_{samples})` whereas setting the `thresholds`
- argument to either an integer, list or a 1d tensor will use a binned version that uses memory of
- size :math:`\mathcal{O}(n_{thresholds} \times n_{classes})` (constant memory).
- Args:
- num_classes: Integer specifying the number of classes
- average:
- Defines the reduction that is applied over classes. Should be one of the following:
- - ``macro``: Calculate score for each class and average them
- - ``weighted``: calculates score for each class and computes weighted average using their support
- - ``"none"`` or ``None``: calculates score for each class and applies no reduction
- thresholds:
- Can be one of:
- - If set to `None`, will use a non-binned approach where thresholds are dynamically calculated from
- all the data. Most accurate but also most memory consuming approach.
- - If set to an `int` (larger than 1), will use that number of thresholds linearly spaced from
- 0 to 1 as bins for the calculation.
- - If set to an `list` of floats, will use the indicated thresholds in the list as bins for the calculation
- - If set to an 1d `tensor` of floats, will use the indicated thresholds in the tensor as
- bins for the calculation.
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info.
- Example:
- >>> from torch import tensor
- >>> from torchmetrics.classification import MulticlassAveragePrecision
- >>> preds = tensor([[0.75, 0.05, 0.05, 0.05, 0.05],
- ... [0.05, 0.75, 0.05, 0.05, 0.05],
- ... [0.05, 0.05, 0.75, 0.05, 0.05],
- ... [0.05, 0.05, 0.05, 0.75, 0.05]])
- >>> target = tensor([0, 1, 3, 2])
- >>> metric = MulticlassAveragePrecision(num_classes=5, average="macro", thresholds=None)
- >>> metric(preds, target)
- tensor(0.6250)
- >>> mcap = MulticlassAveragePrecision(num_classes=5, average=None, thresholds=None)
- >>> mcap(preds, target)
- tensor([1.0000, 1.0000, 0.2500, 0.2500, nan])
- >>> mcap = MulticlassAveragePrecision(num_classes=5, average="macro", thresholds=5)
- >>> mcap(preds, target)
- tensor(0.5000)
- >>> mcap = MulticlassAveragePrecision(num_classes=5, average=None, thresholds=5)
- >>> mcap(preds, target)
- tensor([1.0000, 1.0000, 0.2500, 0.2500, -0.0000])
- """
- is_differentiable: bool = False
- higher_is_better: bool = True
- full_state_update: bool = False
- plot_lower_bound: float = 0.0
- plot_upper_bound: float = 1.0
- plot_legend_name: str = "Class"
- def __init__(
- self,
- num_classes: int,
- average: Optional[Literal["macro", "weighted", "none"]] = "macro",
- thresholds: Optional[Union[int, list[float], Tensor]] = None,
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- **kwargs: Any,
- ) -> None:
- super().__init__(
- num_classes=num_classes, thresholds=thresholds, ignore_index=ignore_index, validate_args=False, **kwargs
- )
- if validate_args:
- _multiclass_average_precision_arg_validation(num_classes, average, thresholds, ignore_index)
- self.average = average # type: ignore[assignment]
- self.validate_args = validate_args
- def compute(self) -> Tensor: # type: ignore[override]
- """Compute metric."""
- state = (dim_zero_cat(self.preds), dim_zero_cat(self.target)) if self.thresholds is None else self.confmat
- return _multiclass_average_precision_compute(
- state,
- self.num_classes,
- self.average, # type: ignore[arg-type]
- self.thresholds,
- )
- def plot( # type: ignore[override]
- self, val: Optional[Union[Tensor, Sequence[Tensor]]] = None, ax: Optional[_AX_TYPE] = None
- ) -> _PLOT_OUT_TYPE:
- """Plot a single or multiple values from the metric.
- Args:
- val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results.
- If no value is provided, will automatically call `metric.compute` and plot that result.
- ax: An matplotlib axis object. If provided will add plot to that axis
- Returns:
- Figure and Axes object
- Raises:
- ModuleNotFoundError:
- If `matplotlib` is not installed
- .. plot::
- :scale: 75
- >>> # Example plotting a single
- >>> import torch
- >>> from torchmetrics.classification import MulticlassAveragePrecision
- >>> metric = MulticlassAveragePrecision(num_classes=3)
- >>> metric.update(torch.randn(20, 3), torch.randint(3,(20,)))
- >>> fig_, ax_ = metric.plot()
- .. plot::
- :scale: 75
- >>> # Example plotting multiple values
- >>> import torch
- >>> from torchmetrics.classification import MulticlassAveragePrecision
- >>> metric = MulticlassAveragePrecision(num_classes=3)
- >>> values = [ ]
- >>> for _ in range(10):
- ... values.append(metric(torch.randn(20, 3), torch.randint(3, (20,))))
- >>> fig_, ax_ = metric.plot(values)
- """
- return self._plot(val, ax)
- class MultilabelAveragePrecision(MultilabelPrecisionRecallCurve):
- r"""Compute the average precision (AP) score for multilabel tasks.
- The AP score summarizes a precision-recall curve as an weighted mean of precisions at each threshold, with the
- difference in recall from the previous threshold as weight:
- .. math::
- AP = \sum_{n} (R_n - R_{n-1}) P_n
- where :math:`P_n, R_n` is the respective precision and recall at threshold index :math:`n`. This value is
- equivalent to the area under the precision-recall curve (AUPRC).
- As input to ``forward`` and ``update`` the metric accepts the following input:
- - ``preds`` (:class:`~torch.Tensor`): A float tensor of shape ``(N, C, ...)`` containing probabilities or logits
- for each observation. If preds has values outside [0,1] range we consider the input to be logits and will auto
- apply sigmoid per element.
- - ``target`` (:class:`~torch.Tensor`): An int tensor of shape ``(N, C, ...)`` containing ground truth labels, and
- therefore only contain {0,1} values (except if `ignore_index` is specified).
- As output to ``forward`` and ``compute`` the metric returns the following output:
- - ``mlap`` (:class:`~torch.Tensor`): If `average=None|"none"` then a 1d tensor of shape (n_classes, ) will be
- returned with AP score per class. If `average="micro|macro"|"weighted"` then a single scalar is returned.
- Additional dimension ``...`` will be flattened into the batch dimension.
- The implementation both supports calculating the metric in a non-binned but accurate version and a binned
- version that is less accurate but more memory efficient. Setting the `thresholds` argument to `None` will activate
- the non-binned version that uses memory of size :math:`\mathcal{O}(n_{samples})` whereas setting the
- `thresholds` argument to either an integer, list or a 1d tensor will use a binned version that uses memory of
- size :math:`\mathcal{O}(n_{thresholds} \times n_{labels})` (constant memory).
- Args:
- num_labels: Integer specifying the number of labels
- average:
- Defines the reduction that is applied over labels. Should be one of the following:
- - ``micro``: Sum score over all labels
- - ``macro``: Calculate score for each label and average them
- - ``weighted``: calculates score for each label and computes weighted average using their support
- - ``"none"`` or ``None``: calculates score for each label and applies no reduction
- thresholds:
- Can be one of:
- - If set to `None`, will use a non-binned approach where thresholds are dynamically calculated from
- all the data. Most accurate but also most memory consuming approach.
- - If set to an `int` (larger than 1), will use that number of thresholds linearly spaced from
- 0 to 1 as bins for the calculation.
- - If set to an `list` of floats, will use the indicated thresholds in the list as bins for the calculation
- - If set to an 1d `tensor` of floats, will use the indicated thresholds in the tensor as
- bins for the calculation.
- validate_args: bool indicating if input arguments and tensors should be validated for correctness.
- Set to ``False`` for faster computations.
- kwargs: Additional keyword arguments, see :ref:`Metric kwargs` for more info.
- Example:
- >>> from torch import tensor
- >>> from torchmetrics.classification import MultilabelAveragePrecision
- >>> preds = tensor([[0.75, 0.05, 0.35],
- ... [0.45, 0.75, 0.05],
- ... [0.05, 0.55, 0.75],
- ... [0.05, 0.65, 0.05]])
- >>> target = tensor([[1, 0, 1],
- ... [0, 0, 0],
- ... [0, 1, 1],
- ... [1, 1, 1]])
- >>> metric = MultilabelAveragePrecision(num_labels=3, average="macro", thresholds=None)
- >>> metric(preds, target)
- tensor(0.7500)
- >>> mlap = MultilabelAveragePrecision(num_labels=3, average=None, thresholds=None)
- >>> mlap(preds, target)
- tensor([0.7500, 0.5833, 0.9167])
- >>> mlap = MultilabelAveragePrecision(num_labels=3, average="macro", thresholds=5)
- >>> mlap(preds, target)
- tensor(0.7778)
- >>> mlap = MultilabelAveragePrecision(num_labels=3, average=None, thresholds=5)
- >>> mlap(preds, target)
- tensor([0.7500, 0.6667, 0.9167])
- """
- is_differentiable: bool = False
- higher_is_better: bool = True
- full_state_update: bool = False
- plot_lower_bound: float = 0.0
- plot_upper_bound: float = 1.0
- plot_legend_name: str = "Label"
- def __init__(
- self,
- num_labels: int,
- average: Optional[Literal["micro", "macro", "weighted", "none"]] = "macro",
- thresholds: Optional[Union[int, list[float], Tensor]] = None,
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- **kwargs: Any,
- ) -> None:
- super().__init__(
- num_labels=num_labels, thresholds=thresholds, ignore_index=ignore_index, validate_args=False, **kwargs
- )
- if validate_args:
- _multilabel_average_precision_arg_validation(num_labels, average, thresholds, ignore_index)
- self.average = average
- self.validate_args = validate_args
- def compute(self) -> Tensor: # type: ignore[override]
- """Compute metric."""
- state = (dim_zero_cat(self.preds), dim_zero_cat(self.target)) if self.thresholds is None else self.confmat
- return _multilabel_average_precision_compute(
- state, self.num_labels, self.average, self.thresholds, self.ignore_index
- )
- def plot( # type: ignore[override]
- self, val: Optional[Union[Tensor, Sequence[Tensor]]] = None, ax: Optional[_AX_TYPE] = None
- ) -> _PLOT_OUT_TYPE:
- """Plot a single or multiple values from the metric.
- Args:
- val: Either a single result from calling `metric.forward` or `metric.compute` or a list of these results.
- If no value is provided, will automatically call `metric.compute` and plot that result.
- ax: An matplotlib axis object. If provided will add plot to that axis
- Returns:
- Figure and Axes object
- Raises:
- ModuleNotFoundError:
- If `matplotlib` is not installed
- .. plot::
- :scale: 75
- >>> # Example plotting a single
- >>> import torch
- >>> from torchmetrics.classification import MultilabelAveragePrecision
- >>> metric = MultilabelAveragePrecision(num_labels=3)
- >>> metric.update(torch.rand(20,3), torch.randint(2, (20,3)))
- >>> fig_, ax_ = metric.plot()
- .. plot::
- :scale: 75
- >>> # Example plotting multiple values
- >>> import torch
- >>> from torchmetrics.classification import MultilabelAveragePrecision
- >>> metric = MultilabelAveragePrecision(num_labels=3)
- >>> values = [ ]
- >>> for _ in range(10):
- ... values.append(metric(torch.rand(20,3), torch.randint(2, (20,3))))
- >>> fig_, ax_ = metric.plot(values)
- """
- return self._plot(val, ax)
- class AveragePrecision(_ClassificationTaskWrapper):
- r"""Compute the average precision (AP) score.
- The AP score summarizes a precision-recall curve as an weighted mean of precisions at each threshold, with the
- difference in recall from the previous threshold as weight:
- .. math::
- AP = \sum_{n} (R_n - R_{n-1}) P_n
- where :math:`P_n, R_n` is the respective precision and recall at threshold index :math:`n`. This value is
- equivalent to the area under the precision-recall curve (AUPRC).
- This function is a simple wrapper to get the task specific versions of this metric, which is done by setting the
- ``task`` argument to either ``'binary'``, ``'multiclass'`` or ``'multilabel'``. See the documentation of
- :class:`~torchmetrics.classification.BinaryAveragePrecision`,
- :class:`~torchmetrics.classification.MulticlassAveragePrecision` and
- :class:`~torchmetrics.classification.MultilabelAveragePrecision` for the specific details of each argument
- influence and examples.
- Legacy Example:
- >>> from torch import tensor
- >>> pred = tensor([0, 0.1, 0.8, 0.4])
- >>> target = tensor([0, 1, 1, 1])
- >>> average_precision = AveragePrecision(task="binary")
- >>> average_precision(pred, target)
- tensor(1.)
- >>> pred = tensor([[0.75, 0.05, 0.05, 0.05, 0.05],
- ... [0.05, 0.75, 0.05, 0.05, 0.05],
- ... [0.05, 0.05, 0.75, 0.05, 0.05],
- ... [0.05, 0.05, 0.05, 0.75, 0.05]])
- >>> target = tensor([0, 1, 3, 2])
- >>> average_precision = AveragePrecision(task="multiclass", num_classes=5, average=None)
- >>> average_precision(pred, target)
- tensor([1.0000, 1.0000, 0.2500, 0.2500, nan])
- """
- def __new__( # type: ignore[misc]
- cls: type["AveragePrecision"],
- task: Literal["binary", "multiclass", "multilabel"],
- thresholds: Optional[Union[int, list[float], Tensor]] = None,
- num_classes: Optional[int] = None,
- num_labels: Optional[int] = None,
- average: Optional[Literal["macro", "weighted", "none"]] = "macro",
- ignore_index: Optional[int] = None,
- validate_args: bool = True,
- **kwargs: Any,
- ) -> Metric:
- """Initialize task metric."""
- task = ClassificationTask.from_str(task)
- kwargs.update({"thresholds": thresholds, "ignore_index": ignore_index, "validate_args": validate_args})
- if task == ClassificationTask.BINARY:
- return BinaryAveragePrecision(**kwargs)
- if task == ClassificationTask.MULTICLASS:
- if not isinstance(num_classes, int):
- raise ValueError(f"`num_classes` is expected to be `int` but `{type(num_classes)} was passed.`")
- return MulticlassAveragePrecision(num_classes, average, **kwargs)
- if task == ClassificationTask.MULTILABEL:
- if not isinstance(num_labels, int):
- raise ValueError(f"`num_labels` is expected to be `int` but `{type(num_labels)} was passed.`")
- return MultilabelAveragePrecision(num_labels, average, **kwargs)
- raise ValueError(f"Task {task} not supported!")
|