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- """test sparse matrix construction functions"""
- import numpy as np
- from numpy import array
- from numpy.testing import (assert_equal, assert_,
- assert_array_equal, assert_array_almost_equal_nulp)
- import pytest
- from pytest import raises as assert_raises
- from scipy._lib._testutils import check_free_memory
- from scipy.sparse import (csr_matrix, coo_matrix,
- csr_array, coo_array,
- csc_array, bsr_array,
- dia_array, dok_array,
- lil_array, csc_matrix,
- bsr_matrix, dia_matrix,
- lil_matrix, sparray, spmatrix,
- _construct as construct)
- from scipy.sparse._construct import rand as sprand
- sparse_formats = ['csr','csc','coo','bsr','dia','lil','dok']
- #TODO check whether format=XXX is respected
- def _sprandn(m, n, density=0.01, format="coo", dtype=None, rng=None):
- # Helper function for testing.
- rng = np.random.default_rng(rng)
- data_rvs = rng.standard_normal
- return construct.random(m, n, density, format, dtype, rng, data_rvs)
- def _sprandn_array(m, n, density=0.01, format="coo", dtype=None, rng=None):
- # Helper function for testing.
- rng = np.random.default_rng(rng)
- data_sampler = rng.standard_normal
- return construct.random_array((m, n), density=density, format=format, dtype=dtype,
- rng=rng, data_sampler=data_sampler)
- class TestConstructUtils:
- @pytest.mark.parametrize("cls", [
- csc_array, csr_array, coo_array, bsr_array,
- dia_array, dok_array, lil_array
- ])
- def test_singleton_array_constructor(self, cls):
- with pytest.raises(
- ValueError,
- match=(
- 'scipy sparse array classes do not support '
- 'instantiation from a scalar'
- )
- ):
- cls(0)
- @pytest.mark.parametrize("cls", [
- csc_matrix, csr_matrix, coo_matrix,
- bsr_matrix, dia_matrix, lil_matrix
- ])
- def test_singleton_matrix_constructor(self, cls):
- """
- This test is for backwards compatibility post scipy 1.13.
- The behavior observed here is what is to be expected
- with the older matrix classes. This test comes with the
- exception of dok_matrix, which was not working pre scipy1.12
- (unlike the rest of these).
- """
- assert cls(0).shape == (1, 1)
- def test_spdiags(self):
- diags1 = array([[1, 2, 3, 4, 5]])
- diags2 = array([[1, 2, 3, 4, 5],
- [6, 7, 8, 9,10]])
- diags3 = array([[1, 2, 3, 4, 5],
- [6, 7, 8, 9,10],
- [11,12,13,14,15]])
- cases = []
- cases.append((diags1, 0, 1, 1, [[1]]))
- cases.append((diags1, [0], 1, 1, [[1]]))
- cases.append((diags1, [0], 2, 1, [[1],[0]]))
- cases.append((diags1, [0], 1, 2, [[1,0]]))
- cases.append((diags1, [1], 1, 2, [[0,2]]))
- cases.append((diags1,[-1], 1, 2, [[0,0]]))
- cases.append((diags1, [0], 2, 2, [[1,0],[0,2]]))
- cases.append((diags1,[-1], 2, 2, [[0,0],[1,0]]))
- cases.append((diags1, [3], 2, 2, [[0,0],[0,0]]))
- cases.append((diags1, [0], 3, 4, [[1,0,0,0],[0,2,0,0],[0,0,3,0]]))
- cases.append((diags1, [1], 3, 4, [[0,2,0,0],[0,0,3,0],[0,0,0,4]]))
- cases.append((diags1, [2], 3, 5, [[0,0,3,0,0],[0,0,0,4,0],[0,0,0,0,5]]))
- cases.append((diags2, [0,2], 3, 3, [[1,0,8],[0,2,0],[0,0,3]]))
- cases.append((diags2, [-1,0], 3, 4, [[6,0,0,0],[1,7,0,0],[0,2,8,0]]))
- cases.append((diags2, [2,-3], 6, 6, [[0,0,3,0,0,0],
- [0,0,0,4,0,0],
- [0,0,0,0,5,0],
- [6,0,0,0,0,0],
- [0,7,0,0,0,0],
- [0,0,8,0,0,0]]))
- cases.append((diags3, [-1,0,1], 6, 6, [[6,12, 0, 0, 0, 0],
- [1, 7,13, 0, 0, 0],
- [0, 2, 8,14, 0, 0],
- [0, 0, 3, 9,15, 0],
- [0, 0, 0, 4,10, 0],
- [0, 0, 0, 0, 5, 0]]))
- cases.append((diags3, [-4,2,-1], 6, 5, [[0, 0, 8, 0, 0],
- [11, 0, 0, 9, 0],
- [0,12, 0, 0,10],
- [0, 0,13, 0, 0],
- [1, 0, 0,14, 0],
- [0, 2, 0, 0,15]]))
- cases.append((diags3, [-1, 1, 2], len(diags3[0]), len(diags3[0]),
- [[0, 7, 13, 0, 0],
- [1, 0, 8, 14, 0],
- [0, 2, 0, 9, 15],
- [0, 0, 3, 0, 10],
- [0, 0, 0, 4, 0]]))
- for d, o, m, n, result in cases:
- if len(d[0]) == m and m == n:
- assert_equal(construct.spdiags(d, o).toarray(), result)
- assert_equal(construct.spdiags(d, o, m, n).toarray(), result)
- assert_equal(construct.spdiags(d, o, (m, n)).toarray(), result)
- def test_diags(self):
- a = array([1.0, 2.0, 3.0, 4.0, 5.0])
- b = array([6.0, 7.0, 8.0, 9.0, 10.0])
- c = array([11.0, 12.0, 13.0, 14.0, 15.0])
- cases = []
- cases.append((a[:1], 0, (1, 1), [[1]]))
- cases.append(([a[:1]], [0], (1, 1), [[1]]))
- cases.append(([a[:1]], [0], (2, 1), [[1],[0]]))
- cases.append(([a[:1]], [0], (1, 2), [[1,0]]))
- cases.append(([a[:1]], [1], (1, 2), [[0,1]]))
- cases.append(([a[:2]], [0], (2, 2), [[1,0],[0,2]]))
- cases.append(([a[:1]],[-1], (2, 2), [[0,0],[1,0]]))
- cases.append(([a[:3]], [0], (3, 4), [[1,0,0,0],[0,2,0,0],[0,0,3,0]]))
- cases.append(([a[:3]], [1], (3, 4), [[0,1,0,0],[0,0,2,0],[0,0,0,3]]))
- cases.append(([a[:1]], [-2], (3, 5), [[0,0,0,0,0],[0,0,0,0,0],[1,0,0,0,0]]))
- cases.append(([a[:2]], [-1], (3, 5), [[0,0,0,0,0],[1,0,0,0,0],[0,2,0,0,0]]))
- cases.append(([a[:3]], [0], (3, 5), [[1,0,0,0,0],[0,2,0,0,0],[0,0,3,0,0]]))
- cases.append(([a[:3]], [1], (3, 5), [[0,1,0,0,0],[0,0,2,0,0],[0,0,0,3,0]]))
- cases.append(([a[:3]], [2], (3, 5), [[0,0,1,0,0],[0,0,0,2,0],[0,0,0,0,3]]))
- cases.append(([a[:2]], [3], (3, 5), [[0,0,0,1,0],[0,0,0,0,2],[0,0,0,0,0]]))
- cases.append(([a[:1]], [4], (3, 5), [[0,0,0,0,1],[0,0,0,0,0],[0,0,0,0,0]]))
- cases.append(([a[:1]], [-4], (5, 3), [[0,0,0],[0,0,0],[0,0,0],[0,0,0],[1,0,0]]))
- cases.append(([a[:2]], [-3], (5, 3), [[0,0,0],[0,0,0],[0,0,0],[1,0,0],[0,2,0]]))
- cases.append(([a[:3]], [-2], (5, 3), [[0,0,0],[0,0,0],[1,0,0],[0,2,0],[0,0,3]]))
- cases.append(([a[:3]], [-1], (5, 3), [[0,0,0],[1,0,0],[0,2,0],[0,0,3],[0,0,0]]))
- cases.append(([a[:3]], [0], (5, 3), [[1,0,0],[0,2,0],[0,0,3],[0,0,0],[0,0,0]]))
- cases.append(([a[:2]], [1], (5, 3), [[0,1,0],[0,0,2],[0,0,0],[0,0,0],[0,0,0]]))
- cases.append(([a[:1]], [2], (5, 3), [[0,0,1],[0,0,0],[0,0,0],[0,0,0],[0,0,0]]))
- cases.append(([a[:3],b[:1]], [0,2], (3, 3), [[1,0,6],[0,2,0],[0,0,3]]))
- cases.append(([a[:2],b[:3]], [-1,0], (3, 4), [[6,0,0,0],[1,7,0,0],[0,2,8,0]]))
- cases.append(([a[:4],b[:3]], [2,-3], (6, 6), [[0,0,1,0,0,0],
- [0,0,0,2,0,0],
- [0,0,0,0,3,0],
- [6,0,0,0,0,4],
- [0,7,0,0,0,0],
- [0,0,8,0,0,0]]))
- cases.append(([a[:4],b,c[:4]], [-1,0,1], (5, 5), [[6,11, 0, 0, 0],
- [1, 7,12, 0, 0],
- [0, 2, 8,13, 0],
- [0, 0, 3, 9,14],
- [0, 0, 0, 4,10]]))
- cases.append(([a[:2],b[:3],c], [-4,2,-1], (6, 5), [[0, 0, 6, 0, 0],
- [11, 0, 0, 7, 0],
- [0,12, 0, 0, 8],
- [0, 0,13, 0, 0],
- [1, 0, 0,14, 0],
- [0, 2, 0, 0,15]]))
- # too long arrays are OK
- cases.append(([a], [0], (1, 1), [[1]]))
- cases.append(([a[:3],b], [0,2], (3, 3), [[1, 0, 6], [0, 2, 0], [0, 0, 3]]))
- cases.append((
- np.array([[1.0, 2.0, 3.0], [4.0, 5.0, 6.0]]),
- [0,-1],
- (3, 3),
- [[1, 0, 0], [4, 2, 0], [0, 5, 3]]
- ))
- # scalar case: broadcasting
- cases.append(([1.0,-2.0,1.0], [1,0,-1], (3, 3), [[-2, 1, 0],
- [1, -2, 1],
- [0, 1, -2]]))
- for d, o, shape, result in cases:
- err_msg = f"{d!r} {o!r} {shape!r} {result!r}"
- assert_equal(construct.diags(d, offsets=o, shape=shape).toarray(),
- result, err_msg=err_msg)
- if (shape[0] == shape[1]
- and hasattr(d[0], '__len__')
- and len(d[0]) <= max(shape)):
- # should be able to find the shape automatically
- assert_equal(construct.diags(d, offsets=o).toarray(),
- result, err_msg=err_msg)
- def test_diags_default(self):
- a = array([1.0, 2.0, 3.0, 4.0, 5.0])
- assert_equal(construct.diags(a).toarray(), np.diag(a))
- def test_diags_default_bad(self):
- a = array([[1, 2, 3, 4, 5], [2, 3, 4, 5, 6]])
- assert_raises(ValueError, construct.diags, a)
- def test_diags_bad(self):
- a = array([1.0, 2.0, 3.0, 4.0, 5.0])
- b = array([6.0, 7.0, 8.0, 9.0, 10.0])
- c = array([11.0, 12.0, 13.0, 14.0, 15.0])
- cases = []
- cases.append(([a[:0]], 0, (1, 1)))
- cases.append(([a[:4],b,c[:3]], [-1,0,1], (5, 5)))
- cases.append(([a[:2],c,b[:3]], [-4,2,-1], (6, 5)))
- cases.append(([a[:2],c,b[:3]], [-4,2,-1], None))
- cases.append(([], [-4,2,-1], None))
- cases.append(([1.0], [-5], (4, 4)))
- cases.append(([a], 0, None))
- for d, o, shape in cases:
- assert_raises(ValueError, construct.diags, d, offsets=o, shape=shape)
- assert_raises(TypeError, construct.diags, [[None]], offsets=[0])
- def test_diags_vs_diag(self):
- # Check that
- #
- # diags([a, b, ...], [i, j, ...]) == diag(a, i) + diag(b, j) + ...
- #
- rng = np.random.RandomState(1234)
- for n_diags in [1, 2, 3, 4, 5, 10]:
- n = 1 + n_diags//2 + rng.randint(0, 10)
- offsets = np.arange(-n+1, n-1)
- rng.shuffle(offsets)
- offsets = offsets[:n_diags]
- diagonals = [rng.rand(n - abs(q)) for q in offsets]
- mat = construct.diags(diagonals, offsets=offsets)
- dense_mat = sum([np.diag(x, j) for x, j in zip(diagonals, offsets)])
- assert_array_almost_equal_nulp(mat.toarray(), dense_mat)
- if len(offsets) == 1:
- mat = construct.diags(diagonals[0], offsets=offsets[0])
- dense_mat = np.diag(diagonals[0], offsets[0])
- assert_array_almost_equal_nulp(mat.toarray(), dense_mat)
- def test_diags_dtype(self):
- x = construct.diags([2.2], offsets=[0], shape=(2, 2), dtype=int)
- assert_equal(x.dtype, int)
- assert_equal(x.toarray(), [[2, 0], [0, 2]])
- def test_diags_one_diagonal(self):
- d = [0.0, 1.0, 2.0, 3.0, 4.0]
- for k in range(-5, 6):
- assert_equal(construct.diags(d, offsets=k).toarray(),
- construct.diags([d], offsets=[k]).toarray())
- def test_diags_empty(self):
- x = construct.diags([])
- assert_equal(x.shape, (0, 0))
- @pytest.mark.parametrize("identity", [construct.identity, construct.eye_array])
- def test_identity(self, identity):
- assert_equal(identity(1).toarray(), [[1]])
- assert_equal(identity(2).toarray(), [[1,0],[0,1]])
- I = identity(3, dtype='int8', format='dia')
- assert_equal(I.dtype, np.dtype('int8'))
- assert_equal(I.format, 'dia')
- for fmt in sparse_formats:
- I = identity(3, format=fmt)
- assert_equal(I.format, fmt)
- assert_equal(I.toarray(), [[1,0,0],[0,1,0],[0,0,1]])
- @pytest.mark.parametrize("eye", [construct.eye, construct.eye_array])
- def test_eye(self, eye):
- assert_equal(eye(1,1).toarray(), [[1]])
- assert_equal(eye(2,3).toarray(), [[1,0,0],[0,1,0]])
- assert_equal(eye(3,2).toarray(), [[1,0],[0,1],[0,0]])
- assert_equal(eye(3,3).toarray(), [[1,0,0],[0,1,0],[0,0,1]])
- assert_equal(eye(3,3,dtype='int16').dtype, np.dtype('int16'))
- for m in [3, 5]:
- for n in [3, 5]:
- for k in range(-5,6):
- # scipy.sparse.eye deviates from np.eye here. np.eye will
- # create arrays of all 0's when the diagonal offset is
- # greater than the size of the array. For sparse arrays
- # this makes less sense, especially as it results in dia
- # arrays with negative diagonals. Therefore sp.sparse.eye
- # validates that diagonal offsets fall within the shape of
- # the array. See gh-18555.
- if (k > 0 and k > n) or (k < 0 and abs(k) > m):
- with pytest.raises(
- ValueError, match="Offset.*out of bounds"
- ):
- eye(m, n, k=k)
- else:
- assert_equal(
- eye(m, n, k=k).toarray(),
- np.eye(m, n, k=k)
- )
- if m == n:
- assert_equal(
- eye(m, k=k).toarray(),
- np.eye(m, n, k=k)
- )
- @pytest.mark.parametrize("eye", [construct.eye, construct.eye_array])
- def test_eye_one(self, eye):
- assert_equal(eye(1).toarray(), [[1]])
- assert_equal(eye(2).toarray(), [[1,0],[0,1]])
- I = eye(3, dtype='int8', format='dia')
- assert_equal(I.dtype, np.dtype('int8'))
- assert_equal(I.format, 'dia')
- for fmt in sparse_formats:
- I = eye(3, format=fmt)
- assert_equal(I.format, fmt)
- assert_equal(I.toarray(), [[1,0,0],[0,1,0],[0,0,1]])
- def test_eye_array_vs_matrix(self):
- assert isinstance(construct.eye_array(3), sparray)
- assert not isinstance(construct.eye(3), sparray)
- @pytest.mark.parametrize("arr,kw_format,out_format", [
- ([[0, 0], [0, 1]], None, 'coo'), # 2D sparse
- ([[1, 0], [1, 1]], None, 'bsr'), # 2D dense
- ([[[1, 0], [1, 1]]], None, 'coo'), # 3D dense
- ])
- def test_kron_output_format(self, arr, kw_format, out_format):
- sparr = coo_array(arr)
- assert construct.kron(sparr, sparr, format=kw_format).format == out_format
- assert construct.kron(sparr, arr, format=kw_format).format == out_format
- assert construct.kron(arr, sparr, format=kw_format).format == out_format
- def test_kron(self):
- cases = []
- cases.append(array([[0]]))
- cases.append(array([[-1]]))
- cases.append(array([[4]]))
- cases.append(array([[10]]))
- cases.append(array([[0], [0]]))
- cases.append(array([[0, 0]]))
- cases.append(array([[1, 2], [3, 4]]))
- cases.append(array([[0, 2], [5, 0]]))
- cases.append(array([[0, 2, -6], [8, 0, 14]]))
- cases.append(array([[5, 4], [0, 0], [6, 0]]))
- cases.append(array([[5, 4, 4], [1, 0, 0], [6, 0, 8]]))
- cases.append(array([[0, 1, 0, 2, 0, 5, 8]]))
- cases.append(array([[0.5, 0.125, 0, 3.25], [0, 2.5, 0, 0]]))
- # test all cases with some formats
- for a in cases:
- ca = csr_array(a)
- for b in cases:
- cb = csr_array(b)
- expected = np.kron(a, b)
- for fmt in sparse_formats[1:4]:
- result = construct.kron(ca, cb, format=fmt)
- assert_equal(result.format, fmt)
- assert_array_equal(result.toarray(), expected)
- assert isinstance(result, sparray)
- # nD cases
- cases.append(array([0, 1, 2]))
- cases.append(array([[[0, 1, 2], [0, 1, 0]]]))
- cases.append(array([[[0, 1]], [[2, 2]], [[1, 0]], [[2, 0]]]))
- for a in cases:
- ca = coo_array(a)
- for b in cases:
- cb = coo_array(b)
- expected = np.kron(a, b)
- result = construct.kron(ca, cb, format="coo")
- assert_array_equal(result.toarray(), expected)
- # test one case with all formats
- a = array([[0.5, 0.125, 0, 3.25], [0, 2.5, 0, 0]])
- b = array([[5, 4, 4], [1, 0, 0], [6, 0, 8]])
- ca = csr_array(a)
- cb = csr_array(b)
- expected = np.kron(a, b)
- for fmt in sparse_formats:
- result = construct.kron(ca, cb, format=fmt)
- assert_equal(result.format, fmt)
- assert_array_equal(result.toarray(), expected)
- assert isinstance(result, sparray)
- # check that spmatrix returned when both inputs are spmatrix
- result = construct.kron(csr_matrix(a), csr_matrix(b), format=fmt)
- assert_equal(result.format, fmt)
- assert_array_equal(result.toarray(), expected)
- assert isinstance(result, spmatrix)
- def test_kron_ndim_exceptions(self):
- # spmatrix is default, so exceptions with 3D unless sparse arrays are input
- with pytest.raises(TypeError, match='expected 2D array or matrix'):
- construct.kron([[0], [1]], [[[0, 1]]])
- with pytest.raises(TypeError, match="expected 2D array or matrix"):
- construct.kron([[[1, 1]]], [[1], [1]])
- # no exception for 3D if any sparse arrays input
- construct.kron(coo_array([[[0, 1]]]), [[[0], [1]]])
- construct.kron([[[0, 1]]], coo_array([[[0], [1]]]))
- # no exception for 1D if either sparray or spmatrix
- construct.kron([[0], [1]], [0, 1, 0]) # spmatrix b/c lists; 1d-list -> 2d
- construct.kron([1, 1], [[1], [1]])
- construct.kron([[0], [1]], coo_array([0, 1, 0])) # sparray 1d-list -> 1d
- construct.kron(coo_array([1, 1]), [[1], [1]])
- def test_kron_large(self):
- n = 2**16
- a = construct.diags_array([1], shape=(1, n), offsets=n-1, dtype=None)
- b = construct.diags_array([1], shape=(n, 1), offsets=1-n, dtype=None)
- construct.kron(a, a)
- construct.kron(b, b)
- def test_kronsum(self):
- cases = []
- cases.append(array([[0]]))
- cases.append(array([[-1]]))
- cases.append(array([[4]]))
- cases.append(array([[10]]))
- cases.append(array([[1,2],[3,4]]))
- cases.append(array([[0,2],[5,0]]))
- cases.append(array([[0,2,-6],[8,0,14],[0,3,0]]))
- cases.append(array([[1,0,0],[0,5,-1],[4,-2,8]]))
- # test all cases with default format
- for a in cases:
- for b in cases:
- result = construct.kronsum(csr_array(a), csr_array(b)).toarray()
- expected = (np.kron(np.eye(b.shape[0]), a)
- + np.kron(b, np.eye(a.shape[0])))
- assert_array_equal(result, expected)
- # check that spmatrix returned when both inputs are spmatrix
- result = construct.kronsum(csr_matrix(a), csr_matrix(b)).toarray()
- assert_array_equal(result, expected)
- def test_kronsum_ndim_exceptions(self):
- with pytest.raises(ValueError, match='requires 2D input'):
- construct.kronsum([[0], [1]], csr_array([0, 1]))
- with pytest.raises(ValueError, match='requires 2D input'):
- construct.kronsum(csr_array([0, 1]), [[0], [1]])
- # no exception if sparse arrays are not input (spmatrix inferred)
- construct.kronsum([[0, 1], [1, 0]], [2])
- @pytest.mark.parametrize("coo_cls", [coo_matrix, coo_array])
- def test_vstack(self, coo_cls):
- A = coo_cls([[1,2],[3,4]])
- B = coo_cls([[5,6]])
- expected = array([[1, 2],
- [3, 4],
- [5, 6]])
- assert_equal(construct.vstack([A, B]).toarray(), expected)
- assert_equal(construct.vstack([A, B], dtype=np.float32).dtype,
- np.float32)
- assert_equal(construct.vstack([A.todok(), B.todok()]).toarray(), expected)
- assert_equal(construct.vstack([A.tocsr(), B.tocsr()]).toarray(),
- expected)
- result = construct.vstack([A.tocsr(), B.tocsr()],
- format="csr", dtype=np.float32)
- assert_equal(result.dtype, np.float32)
- assert_equal(result.indices.dtype, np.int32)
- assert_equal(result.indptr.dtype, np.int32)
- assert_equal(construct.vstack([A.tocsc(), B.tocsc()]).toarray(),
- expected)
- result = construct.vstack([A.tocsc(), B.tocsc()],
- format="csc", dtype=np.float32)
- assert_equal(result.dtype, np.float32)
- assert_equal(result.indices.dtype, np.int32)
- assert_equal(result.indptr.dtype, np.int32)
- def test_vstack_maintain64bit_idx_dtype(self):
- # see gh-20389 v/hstack returns int32 idx_dtype with input int64 idx_dtype
- X = csr_array([[1, 0, 0], [0, 1, 0], [0, 1, 0]])
- X.indptr = X.indptr.astype(np.int64)
- X.indices = X.indices.astype(np.int64)
- assert construct.vstack([X, X]).indptr.dtype == np.int64
- assert construct.hstack([X, X]).indptr.dtype == np.int64
- X = csc_array([[1, 0, 0], [0, 1, 0], [0, 1, 0]])
- X.indptr = X.indptr.astype(np.int64)
- X.indices = X.indices.astype(np.int64)
- assert construct.vstack([X, X]).indptr.dtype == np.int64
- assert construct.hstack([X, X]).indptr.dtype == np.int64
- X = coo_array([[1, 0, 0], [0, 1, 0], [0, 1, 0]])
- X.coords = tuple(co.astype(np.int64) for co in X.coords)
- assert construct.vstack([X, X]).coords[0].dtype == np.int64
- assert construct.hstack([X, X]).coords[0].dtype == np.int64
- def test_vstack_matrix_or_array(self):
- A = [[1,2],[3,4]]
- B = [[5,6]]
- assert isinstance(construct.vstack([coo_array(A), coo_array(B)]), sparray)
- assert isinstance(construct.vstack([coo_array(A), coo_matrix(B)]), sparray)
- assert isinstance(construct.vstack([coo_matrix(A), coo_array(B)]), sparray)
- assert isinstance(construct.vstack([coo_matrix(A), coo_matrix(B)]), spmatrix)
- def test_vstack_1d_with_2d(self):
- # fixes gh-21064
- arr = csr_array([[1, 0, 0], [0, 1, 0]])
- arr1d = csr_array([1, 0, 0])
- arr1dcoo = coo_array([1, 0, 0])
- assert construct.vstack([arr, np.array([0, 0, 0])]).shape == (3, 3)
- assert construct.hstack([arr1d, np.array([[0]])]).shape == (1, 4)
- assert construct.hstack([arr1d, arr1d]).shape == (1, 6)
- assert construct.vstack([arr1d, arr1d]).shape == (2, 3)
- # check csr specialty stacking code like _stack_along_minor_axis
- assert construct.hstack([arr, arr]).shape == (2, 6)
- assert construct.hstack([arr1d, arr1d]).shape == (1, 6)
- assert construct.hstack([arr1d, arr1dcoo]).shape == (1, 6)
- assert construct.vstack([arr, arr1dcoo]).shape == (3, 3)
- assert construct.vstack([arr1d, arr1dcoo]).shape == (2, 3)
- with pytest.raises(ValueError, match="incompatible row dimensions"):
- construct.hstack([arr, np.array([0, 0])])
- with pytest.raises(ValueError, match="incompatible column dimensions"):
- construct.vstack([arr, np.array([0, 0])])
- @pytest.mark.parametrize("coo_cls", [coo_matrix, coo_array])
- def test_hstack(self, coo_cls):
- A = coo_cls([[1,2],[3,4]])
- B = coo_cls([[5],[6]])
- expected = array([[1, 2, 5],
- [3, 4, 6]])
- assert_equal(construct.hstack([A, B]).toarray(), expected)
- assert_equal(construct.hstack([A, B], dtype=np.float32).dtype,
- np.float32)
- assert_equal(construct.hstack([A.todok(), B.todok()]).toarray(), expected)
- assert_equal(construct.hstack([A.tocsc(), B.tocsc()]).toarray(),
- expected)
- assert_equal(construct.hstack([A.tocsc(), B.tocsc()],
- dtype=np.float32).dtype,
- np.float32)
- assert_equal(construct.hstack([A.tocsr(), B.tocsr()]).toarray(),
- expected)
- assert_equal(construct.hstack([A.tocsr(), B.tocsr()],
- dtype=np.float32).dtype,
- np.float32)
- def test_hstack_matrix_or_array(self):
- A = [[1,2],[3,4]]
- B = [[5],[6]]
- assert isinstance(construct.hstack([coo_array(A), coo_array(B)]), sparray)
- assert isinstance(construct.hstack([coo_array(A), coo_matrix(B)]), sparray)
- assert isinstance(construct.hstack([coo_matrix(A), coo_array(B)]), sparray)
- assert isinstance(construct.hstack([coo_matrix(A), coo_matrix(B)]), spmatrix)
- @pytest.mark.parametrize("block_array", (construct.bmat, construct.block_array))
- def test_block_creation(self, block_array):
- A = coo_array([[1, 2], [3, 4]])
- B = coo_array([[5],[6]])
- C = coo_array([[7]])
- D = coo_array((0, 0))
- expected = array([[1, 2, 5],
- [3, 4, 6],
- [0, 0, 7]])
- assert_equal(block_array([[A, B], [None, C]]).toarray(), expected)
- E = csr_array((1, 2), dtype=np.int32)
- assert_equal(block_array([[A.tocsr(), B.tocsr()],
- [E, C.tocsr()]]).toarray(),
- expected)
- assert_equal(block_array([[A.tocsc(), B.tocsc()],
- [E.tocsc(), C.tocsc()]]).toarray(),
- expected)
- expected = array([[1, 2, 0],
- [3, 4, 0],
- [0, 0, 7]])
- assert_equal(block_array([[A, None], [None, C]]).toarray(), expected)
- assert_equal(block_array([[A.tocsr(), E.T.tocsr()],
- [E, C.tocsr()]]).toarray(),
- expected)
- assert_equal(block_array([[A.tocsc(), E.T.tocsc()],
- [E.tocsc(), C.tocsc()]]).toarray(),
- expected)
- Z = csr_array((1, 1), dtype=np.int32)
- expected = array([[0, 5],
- [0, 6],
- [7, 0]])
- assert_equal(block_array([[None, B], [C, None]]).toarray(), expected)
- assert_equal(block_array([[E.T.tocsr(), B.tocsr()],
- [C.tocsr(), Z]]).toarray(),
- expected)
- assert_equal(block_array([[E.T.tocsc(), B.tocsc()],
- [C.tocsc(), Z.tocsc()]]).toarray(),
- expected)
- expected = np.empty((0, 0))
- assert_equal(block_array([[None, None]]).toarray(), expected)
- assert_equal(block_array([[None, D], [D, None]]).toarray(),
- expected)
- # test bug reported in gh-5976
- expected = array([[7]])
- assert_equal(block_array([[None, D], [C, None]]).toarray(),
- expected)
- # test failure cases
- with assert_raises(ValueError) as excinfo:
- block_array([[A], [B]])
- excinfo.match(r'Got blocks\[1,0\]\.shape\[1\] == 1, expected 2')
- with assert_raises(ValueError) as excinfo:
- block_array([[A.tocsr()], [B.tocsr()]])
- excinfo.match(r'incompatible dimensions for axis 1')
- with assert_raises(ValueError) as excinfo:
- block_array([[A.tocsc()], [B.tocsc()]])
- excinfo.match(r'Mismatching dimensions along axis 1: ({1, 2}|{2, 1})')
- with assert_raises(ValueError) as excinfo:
- block_array([[A, C]])
- excinfo.match(r'Got blocks\[0,1\]\.shape\[0\] == 1, expected 2')
- with assert_raises(ValueError) as excinfo:
- block_array([[A.tocsr(), C.tocsr()]])
- excinfo.match(r'Mismatching dimensions along axis 0: ({1, 2}|{2, 1})')
- with assert_raises(ValueError) as excinfo:
- block_array([[A.tocsc(), C.tocsc()]])
- excinfo.match(r'incompatible dimensions for axis 0')
- def test_block_return_type(self):
- block = construct.block_array
- # csr format ensures we hit _compressed_sparse_stack
- # shape of F,G ensure we hit _stack_along_minor_axis
- # list version ensure we hit the path with neither helper function
- Fl, Gl = [[1, 2],[3, 4]], [[7], [5]]
- Fm, Gm = csr_matrix(Fl), csr_matrix(Gl)
- assert isinstance(block([[None, Fl], [Gl, None]], format="csr"), sparray)
- assert isinstance(block([[None, Fm], [Gm, None]], format="csr"), sparray)
- assert isinstance(block([[Fm, Gm]], format="csr"), sparray)
- def test_bmat_return_type(self):
- """This can be removed after sparse matrix is removed"""
- bmat = construct.bmat
- # check return type. if any input _is_array output array, else matrix
- Fl, Gl = [[1, 2],[3, 4]], [[7], [5]]
- Fm, Gm = csr_matrix(Fl), csr_matrix(Gl)
- Fa, Ga = csr_array(Fl), csr_array(Gl)
- assert isinstance(bmat([[Fa, Ga]], format="csr"), sparray)
- assert isinstance(bmat([[Fm, Gm]], format="csr"), spmatrix)
- assert isinstance(bmat([[None, Fa], [Ga, None]], format="csr"), sparray)
- assert isinstance(bmat([[None, Fm], [Ga, None]], format="csr"), sparray)
- assert isinstance(bmat([[None, Fm], [Gm, None]], format="csr"), spmatrix)
- assert isinstance(bmat([[None, Fl], [Gl, None]], format="csr"), spmatrix)
- # type returned by _compressed_sparse_stack (all csr)
- assert isinstance(bmat([[Ga, Ga]], format="csr"), sparray)
- assert isinstance(bmat([[Gm, Ga]], format="csr"), sparray)
- assert isinstance(bmat([[Ga, Gm]], format="csr"), sparray)
- assert isinstance(bmat([[Gm, Gm]], format="csr"), spmatrix)
- # shape is 2x2 so no _stack_along_minor_axis
- assert isinstance(bmat([[Fa, Fm]], format="csr"), sparray)
- assert isinstance(bmat([[Fm, Fm]], format="csr"), spmatrix)
- # type returned by _compressed_sparse_stack (all csc)
- assert isinstance(bmat([[Gm.tocsc(), Ga.tocsc()]], format="csc"), sparray)
- assert isinstance(bmat([[Gm.tocsc(), Gm.tocsc()]], format="csc"), spmatrix)
- # shape is 2x2 so no _stack_along_minor_axis
- assert isinstance(bmat([[Fa.tocsc(), Fm.tocsc()]], format="csr"), sparray)
- assert isinstance(bmat([[Fm.tocsc(), Fm.tocsc()]], format="csr"), spmatrix)
- # type returned when mixed input
- assert isinstance(bmat([[Gl, Ga]], format="csr"), sparray)
- assert isinstance(bmat([[Gm.tocsc(), Ga]], format="csr"), sparray)
- assert isinstance(bmat([[Gm.tocsc(), Gm]], format="csr"), spmatrix)
- assert isinstance(bmat([[Gm, Gm]], format="csc"), spmatrix)
- @pytest.mark.xslow
- @pytest.mark.xfail_on_32bit("Can't create large array for test")
- def test_concatenate_int32_overflow(self):
- """ test for indptr overflow when concatenating matrices """
- check_free_memory(30000)
- n = 33000
- A = csr_array(np.ones((n, n), dtype=bool))
- B = A.copy()
- C = construct._compressed_sparse_stack((A, B), axis=0,
- return_spmatrix=False)
- assert_(np.all(np.equal(np.diff(C.indptr), n)))
- assert_equal(C.indices.dtype, np.int64)
- assert_equal(C.indptr.dtype, np.int64)
- def test_block_diag_basic(self):
- """ basic test for block_diag """
- A = coo_array([[1,2],[3,4]])
- B = coo_array([[5],[6]])
- C = coo_array([[7]])
- expected = array([[1, 2, 0, 0],
- [3, 4, 0, 0],
- [0, 0, 5, 0],
- [0, 0, 6, 0],
- [0, 0, 0, 7]])
- ABC = construct.block_diag((A, B, C))
- assert_equal(ABC.toarray(), expected)
- assert ABC.coords[0].dtype == np.int32
- def test_block_diag_idx_dtype(self):
- X = coo_array([[1, 0, 0], [0, 1, 0], [0, 1, 0]])
- X.coords = tuple(co.astype(np.int64) for co in X.coords)
- assert construct.block_diag([X, X]).coords[0].dtype == np.int64
- def test_block_diag_scalar_1d_args(self):
- """ block_diag with scalar and 1d arguments """
- # one 1d matrix and a scalar
- assert_array_equal(construct.block_diag([[2,3], 4]).toarray(),
- [[2, 3, 0], [0, 0, 4]])
- # 1d sparse arrays
- A = coo_array([1,0,3])
- B = coo_array([0,4])
- assert_array_equal(construct.block_diag([A, B]).toarray(),
- [[1, 0, 3, 0, 0], [0, 0, 0, 0, 4]])
- def test_block_diag_1(self):
- """ block_diag with one matrix """
- assert_equal(construct.block_diag([[1, 0]]).toarray(),
- array([[1, 0]]))
- assert_equal(construct.block_diag([[[1, 0]]]).toarray(),
- array([[1, 0]]))
- assert_equal(construct.block_diag([[[1], [0]]]).toarray(),
- array([[1], [0]]))
- # just on scalar
- assert_equal(construct.block_diag([1]).toarray(),
- array([[1]]))
- def test_block_diag_sparse_arrays(self):
- """ block_diag with sparse arrays """
- A = coo_array([[1, 2, 3]], shape=(1, 3))
- B = coo_array([[4, 5]], shape=(1, 2))
- assert_equal(construct.block_diag([A, B]).toarray(),
- array([[1, 2, 3, 0, 0], [0, 0, 0, 4, 5]]))
- A = coo_array([[1], [2], [3]], shape=(3, 1))
- B = coo_array([[4], [5]], shape=(2, 1))
- assert_equal(construct.block_diag([A, B]).toarray(),
- array([[1, 0], [2, 0], [3, 0], [0, 4], [0, 5]]))
- def test_block_diag_return_type(self):
- A, B = coo_array([[1, 2, 3]]), coo_matrix([[2, 3, 4]])
- assert isinstance(construct.block_diag([A, A]), sparray)
- assert isinstance(construct.block_diag([A, B]), sparray)
- assert isinstance(construct.block_diag([B, A]), sparray)
- assert isinstance(construct.block_diag([B, B]), spmatrix)
- def test_random_sampling(self):
- # Simple sanity checks for sparse random sampling.
- for f in sprand, _sprandn:
- for t in [np.float32, np.float64, np.longdouble,
- np.int32, np.int64, np.complex64, np.complex128]:
- x = f(5, 10, density=0.1, dtype=t)
- assert_equal(x.dtype, t)
- assert_equal(x.shape, (5, 10))
- assert_equal(x.nnz, 5)
- x1 = f(5, 10, density=0.1, rng=4321)
- assert_equal(x1.dtype, np.float64)
- x2 = f(5, 10, density=0.1, rng=np.random.default_rng(4321))
- assert_array_equal(x1.data, x2.data)
- assert_array_equal(x1.row, x2.row)
- assert_array_equal(x1.col, x2.col)
- for density in [0.0, 0.1, 0.5, 1.0]:
- x = f(5, 10, density=density)
- assert_equal(x.nnz, int(density * np.prod(x.shape)))
- for fmt in ['coo', 'csc', 'csr', 'lil']:
- x = f(5, 10, format=fmt)
- assert_equal(x.format, fmt)
- assert_raises(ValueError, lambda: f(5, 10, 1.1))
- assert_raises(ValueError, lambda: f(5, 10, -0.1))
- @pytest.mark.parametrize("rng", [None, 4321, np.random.default_rng(4321)])
- def test_rand(self, rng):
- # Simple distributional checks for sparse.rand.
- x = sprand(10, 20, density=0.5, dtype=np.float64, rng=rng)
- assert_(np.all(np.less_equal(0, x.data)))
- assert_(np.all(np.less_equal(x.data, 1)))
- @pytest.mark.parametrize("rng", [None, 4321, np.random.default_rng(4321)])
- def test_randn(self, rng):
- # Simple distributional checks for sparse.randn.
- # Statistically, some of these should be negative
- # and some should be greater than 1.
- x = _sprandn(10, 20, density=0.5, dtype=np.float64, rng=rng)
- assert_(np.any(np.less(x.data, 0)))
- assert_(np.any(np.less(1, x.data)))
- x = _sprandn_array(10, 20, density=0.5, dtype=np.float64, rng=rng)
- assert_(np.any(np.less(x.data, 0)))
- assert_(np.any(np.less(1, x.data)))
- def test_random_accept_str_dtype(self):
- # anything that np.dtype can convert to a dtype should be accepted
- # for the dtype
- construct.random(10, 10, dtype='d')
- construct.random_array((10, 10), dtype='d')
- construct.random_array((10, 10, 10), dtype='d')
- construct.random_array((10, 10, 10, 10, 10), dtype='d')
- def test_random_array_maintains_array_shape(self):
- # preserve use of old random_state during SPEC 7 transition
- arr = construct.random_array((0, 4), density=0.3, dtype=int, random_state=0)
- assert arr.shape == (0, 4)
- arr = construct.random_array((10, 10, 10), density=0.3, dtype=int, rng=0)
- assert arr.shape == (10, 10, 10)
- arr = construct.random_array((10, 10, 10, 10, 10), density=0.3, dtype=int,
- rng=0)
- assert arr.shape == (10, 10, 10, 10, 10)
- def test_random_array_idx_dtype(self):
- A = construct.random_array((10, 10))
- assert A.coords[0].dtype == np.int32
- def test_random_sparse_matrix_returns_correct_number_of_non_zero_elements(self):
- # A 10 x 10 matrix, with density of 12.65%, should have 13 nonzero elements.
- # 10 x 10 x 0.1265 = 12.65, which should be rounded up to 13, not 12.
- sparse_matrix = construct.random(10, 10, density=0.1265)
- assert_equal(sparse_matrix.count_nonzero(),13)
- # check random_array
- sparse_array = construct.random_array((10, 10), density=0.1265)
- assert_equal(sparse_array.count_nonzero(),13)
- assert isinstance(sparse_array, sparray)
- # check big size
- shape = (2**33, 2**33)
- sparse_array = construct.random_array(shape, density=2.7105e-17)
- assert_equal(sparse_array.count_nonzero(),2000)
- # for n-D
- # check random_array
- sparse_array = construct.random_array((10, 10, 10, 10), density=0.12658)
- assert_equal(sparse_array.count_nonzero(),1266)
- assert isinstance(sparse_array, sparray)
- # check big size
- shape = (2**33, 2**33, 2**33)
- sparse_array = construct.random_array(shape, density=2.7105e-28)
- assert_equal(sparse_array.count_nonzero(),172)
- def test_diags_array():
- """Tests of diags_array that do not rely on diags wrapper."""
- diag = np.arange(1.0, 5.0)
- assert_array_equal(construct.diags_array(diag, dtype=None).toarray(), np.diag(diag))
- assert_array_equal(
- construct.diags_array(diag, offsets=2, dtype=None).toarray(), np.diag(diag, k=2)
- )
- assert_array_equal(
- construct.diags_array(diag, offsets=2, shape=(4, 4), dtype=None).toarray(),
- np.diag(diag, k=2)[:4, :4]
- )
- # Offset outside bounds when shape specified
- with pytest.raises(ValueError, match=".*out of bounds"):
- construct.diags(np.arange(1.0, 5.0), 5, shape=(4, 4))
- @pytest.mark.parametrize('func', [construct.diags_array, construct.diags])
- def test_diags_int(func):
- d = [[3], [1, 2], [4]]
- offsets = [-1, 0, 1]
- # Until the deprecation period is over, `dtype=None` must be given
- # explicitly to avoid the warning and the cast to an inexact type
- # in diags_array() (gh-23102).
- arr = func(d, offsets=offsets, dtype=None)
- expected = np.array([[1, 4], [3, 2]])
- assert_array_equal(arr.toarray(), expected, strict=True)
- @pytest.mark.parametrize('func', [construct.diags_array, construct.diags])
- def test_diags_int_to_float64(func):
- d = [[3], [1, 2], [4]]
- offsets = [-1, 0, 1]
- # Until the deprecation period is over, diags and diag_array will cast
- # integer inputs to float64 by default. A warning will be generated
- # that indicates this behavior is deprecated.
- # See gh-23102.
- with pytest.warns(FutureWarning, match="output has been cast to"):
- arr = func(d, offsets=offsets)
- expected = np.array([[1.0, 4.0], [3.0, 2.0]])
- assert_array_equal(arr.toarray(), expected, strict=True)
- def test_swapaxes():
- # Borrowed from Numpy swapaxes tests
- x = np.array([8.375, 7.545, 8.828, 8.5, 1.757, 5.928,
- 8.43, 7.78, 9.865, 5.878, 8.979, 4.732,
- 3.012, 6.022, 5.095, 3.116, 5.238, 3.957,
- 6.04, 9.63, 7.712, 3.382, 4.489, 6.479,
- 7.189, 9.645, 5.395, 4.961, 9.894, 2.893,
- 7.357, 9.828, 6.272, 3.758, 6.693, 0.993])
- sX = coo_array(x).reshape(6, 6)
- sXswapped = construct.swapaxes(sX, 0, 1)
- assert_equal(sXswapped[-1].toarray(), sX[:, -1].toarray())
- sXX = sX.reshape(3, 2, 2, 3)
- sXXswapped = construct.swapaxes(sXX, 0, 2)
- assert_equal(sXXswapped.shape, (2, 2, 3, 3))
- def test_3d_swapaxes():
- tgt = [[[0, 0], [2, 6]], [[1, 5], [0, 7]]]
- x = np.array([[[0, 1], [2, 0]], [[0, 5], [6, 7]]])
- A = coo_array(x) #[[[0, 1], [2, 0]], [[0, 5], [6, 7]]])
- out = construct.swapaxes(A, 0, 2)
- assert_equal(out.toarray(), tgt)
- assert_equal(out.toarray(), np.swapaxes(x, 0, 2))
- @pytest.mark.parametrize("format", sparse_formats)
- def test_sparse_format_swapaxes(format):
- A = np.array([[2, 0, 1], [3, 5, 0]])
- SA = coo_array(A).asformat(format)
- out = construct.swapaxes(SA, 1, 0)
- assert out.format == "coo"
- assert out.shape == (3, 2)
- assert_equal(out.toarray(), np.swapaxes(A, 1, 0))
- assert not out.has_canonical_format
- def test_axis_swapaxes():
- A = coo_array([[2, 0], [3, 5]])
- with assert_raises(ValueError, match="Invalid axis"):
- construct.swapaxes(A, -4, 0)
- with assert_raises(ValueError, match="Invalid axis"):
- construct.swapaxes(A, 0, -4)
- with assert_raises(ValueError, match="Invalid axis"):
- construct.swapaxes(A, 3, 0)
- with assert_raises(ValueError, match="Invalid axis"):
- construct.swapaxes(A, 0, 3)
- with assert_raises(ValueError, match="Invalid axis"):
- construct.swapaxes(A, 1.2, 1)
- with assert_raises(ValueError, match="Invalid axis"):
- construct.swapaxes(A, 1, 1.2)
- assert_equal(construct.swapaxes(A, 0, 0).toarray(), A.toarray())
- for i in range(2):
- assert_equal(
- construct.swapaxes(A, i, 1 - i).toarray(),
- construct.swapaxes(A, i - 2, -1 - i).toarray()
- )
- def test_permute_dims():
- # Borrowed from Numpy tests.
- x = np.array([8.375, 7.545, 8.828, 8.5, 1.757, 5.928,
- 8.43, 7.78, 9.865, 5.878, 8.979, 4.732,
- 3.012, 6.022, 5.095, 3.116, 5.238, 3.957,
- 6.04, 9.63, 7.712, 3.382, 4.489, 6.479,
- 7.189, 9.645, 5.395, 4.961, 9.894, 2.893,
- 7.357, 9.828, 6.272, 3.758, 6.693, 0.993])
- npx = x.reshape(6, 6)
- sX = coo_array(x).reshape(6, 6)
- sXpermuted = construct.permute_dims(sX, axes=(1, 0), copy=True)
- sXtransposed = sX.transpose(axes=(1, 0))
- assert_equal(sXpermuted.toarray(), sXtransposed.toarray())
- assert_equal(sXpermuted[-1].toarray(), sX[:, -1].toarray())
- npxx = npx.reshape(3, 2, 2, 3)
- sXX = sX.reshape(3, 2, 2, 3)
- sXXpermuted = construct.permute_dims(sXX, axes=(0, 2, 1, 3), copy=True)
- assert_equal(sXXpermuted.shape, (3, 2, 2, 3))
- sXXtransposed = sXX.transpose(axes=(0, 2, 1, 3))
- assert_equal(sXXtransposed.shape, (3, 2, 2, 3))
- assert_equal(sXXpermuted.toarray(), sXXtransposed.toarray())
- # TODO change np.transpose to np.permute_dims when numpy 2 is min supported version
- assert_equal(sXXpermuted.toarray(), np.transpose(npxx, axes=(0, 2, 1, 3)))
- def test_3d_permute_dims():
- tgt = [[[0], [2], [0], [6]], [[1], [0], [5], [7]]]
- x = np.array([[[0, 1], [2, 0], [0, 5], [6, 7]]])
- A = coo_array(x)
- out = construct.permute_dims(A, axes=(2, 1, 0))
- assert_equal(out.shape, (2, 4, 1))
- assert_equal(out.toarray(), tgt)
- # TODO change np.transpose to np.permute_dims when numpy 2 is min supported version
- assert_equal(out.toarray(), np.transpose(x, axes=(2, 1, 0)))
- def test_canonical_format_permute_dims():
- A = coo_array([[2, 0, 1], [3, 5, 0]])
- # identity axes keep has_canoncial_format True after permute_dims.
- assert construct.permute_dims(A, axes=(0, 1)).has_canonical_format is True
- assert construct.permute_dims(A, axes=[0, 1]).has_canonical_format is True
- # order changes set has_canonical_format to False
- assert construct.permute_dims(A, axes=[1, 0]).has_canonical_format is False
- def test_axis_permute_dims():
- A = coo_array([[2, 0, 1], [3, 5, 0]])
- with assert_raises(ValueError, match="Incorrect number of axes"):
- construct.permute_dims(A, axes=(2, 0, 1))
- with assert_raises(ValueError, match="duplicate value in axis"):
- construct.permute_dims(A, axes=(0, 0))
- with assert_raises(TypeError, match="axis must be an integer/tuple"):
- construct.permute_dims(A, axes={1, 0})
- with assert_raises(ValueError, match="axis out of range"):
- construct.permute_dims(A, axes=(-3, 0))
- with assert_raises(ValueError, match="axis out of range"):
- construct.permute_dims(A, axes=(0, -3))
- with assert_raises(ValueError, match="axis out of range"):
- construct.permute_dims(A, axes=(2, 0))
- with assert_raises(ValueError, match="axis out of range"):
- construct.permute_dims(A, axes=(0, 2))
- with assert_raises(TypeError, match="axis must be an integer"):
- construct.permute_dims(A, axes=(1.2, 0))
- assert_equal(
- construct.permute_dims(A, axes=(1, 0), copy=True).toarray(),
- A.transpose(axes=(1, 0), copy=True).toarray()
- )
- # use lists for axes
- assert_equal(
- construct.permute_dims(A, axes=[1, 0], copy=True).toarray(),
- A.transpose(axes=[1, 0], copy=True).toarray()
- )
- assert_equal(
- construct.permute_dims(A, axes=None, copy=True).toarray(),
- A.transpose(axes=(1, 0), copy=True).toarray()
- )
- assert_equal(
- construct.permute_dims(A, axes=(0, 1), copy=True).toarray(), A.toarray()
- )
- @pytest.mark.parametrize("format", sparse_formats)
- def test_sparse_format_permute_dims(format):
- A = np.array([[2, 0, 1], [3, 5, 0]])
- SA = coo_array(A).asformat(format)
- out = construct.permute_dims(SA, axes=(1, 0))
- assert out.format == "coo"
- assert out.shape == (3, 2)
- # TODO change np.transpose to np.permute_dims when numpy 2 is min supported version
- assert_equal(out.toarray(), np.transpose(A, axes=(1, 0)))
- assert not out.has_canonical_format
- def test_expand_dims():
- # Borrowed from Numpy tests.
- x = np.array([8.375, 7.545, 8.828, 8.5, 1.757, 5.928,
- 8.43, 7.78, 9.865, 5.878, 8.979, 4.732,
- 3.012, 6.022, 5.095, 3.116, 5.238, 3.957,
- 6.04, 9.63, 7.712, 3.382, 4.489, 6.479,
- 7.189, 9.645, 5.395, 4.961, 9.894, 2.893,
- 7.357, 9.828, 6.272, 3.758, 6.693, 0.993])
- npx = x.reshape(6, 6)
- sX = coo_array(npx)
- npx_expanded = np.expand_dims(npx, axis=1)
- sXexpanded = construct.expand_dims(sX, axis=1)
- assert_equal(sXexpanded[-1].toarray(), sX[-1, np.newaxis, :].toarray())
- assert_equal(sXexpanded.toarray(), npx_expanded)
- npxx = npx.reshape(3, 2, 2, 3)
- sXX = sX.reshape(3, 2, 2, 3)
- npxx_expanded = np.expand_dims(npxx, axis=2)
- sXXexpanded = construct.expand_dims(sXX, axis=2)
- assert_equal(sXXexpanded.shape, (3, 2, 1, 2, 3))
- assert_equal(sXXexpanded.toarray(), npxx_expanded)
- npxx_expanded = np.expand_dims(npxx, axis=-2)
- sXXexpanded = construct.expand_dims(sXX, axis=-2)
- assert_equal(sXXexpanded.shape, (3, 2, 2, 1, 3))
- assert_equal(sXXexpanded.toarray(), npxx_expanded)
- def test_3d_expand_dims():
- tgt = [[[[0, 0], [2, 6]]], [[[1, 5], [0, 7]]]]
- A = coo_array([[[0, 0], [2, 6]], [[1, 5], [0, 7]]])
- out = construct.expand_dims(A, axis=1)
- assert_equal(out.toarray(), tgt)
- @pytest.mark.parametrize("format", sparse_formats)
- def test_sparse_format_expand_dims(format):
- A = np.array([[2, 0], [3, 5]])
- SA = coo_array(A).asformat(format)
- out = construct.expand_dims(SA, axis=1)
- assert out.format == "coo"
- assert out.shape == (2, 1, 2)
- assert_equal(out.toarray(), np.expand_dims(A, axis=1))
- assert SA.tocoo().has_canonical_format == out.has_canonical_format
- def test_axis_expand_dims():
- A = coo_array([[2, 0], [3, 5]])
- with assert_raises(ValueError, match="Invalid axis"):
- construct.expand_dims(A, axis=-4)
- with assert_raises(ValueError, match="Invalid axis"):
- construct.expand_dims(A, axis=3)
- with assert_raises(ValueError, match="Invalid axis"):
- construct.expand_dims(A, axis=1.2)
- for i in range(3):
- assert_equal(
- construct.expand_dims(A, axis=i).toarray(),
- construct.expand_dims(A, axis=i - 3).toarray()
- )
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