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- """Test of 1D arithmetic operations"""
- import pytest
- import numpy as np
- from numpy.testing import assert_equal, assert_allclose
- from scipy.sparse import coo_array, csr_array
- from scipy.sparse._sputils import isscalarlike
- spcreators = [coo_array, csr_array]
- math_dtypes = [np.int64, np.float64, np.complex128]
- def toarray(a):
- if isinstance(a, np.ndarray) or isscalarlike(a):
- return a
- return a.toarray()
- @pytest.fixture
- def dat1d():
- return np.array([3, 0, 1, 0], 'd')
- @pytest.fixture
- def datsp_math_dtypes(dat1d):
- dat_dtypes = {dtype: dat1d.astype(dtype) for dtype in math_dtypes}
- return {
- sp: [(dtype, dat, sp(dat)) for dtype, dat in dat_dtypes.items()]
- for sp in spcreators
- }
- @pytest.mark.parametrize("spcreator", spcreators)
- class TestArithmetic1D:
- def test_empty_arithmetic(self, spcreator):
- shape = (5,)
- for mytype in [
- np.dtype('int32'),
- np.dtype('float32'),
- np.dtype('float64'),
- np.dtype('complex64'),
- np.dtype('complex128'),
- ]:
- a = spcreator(shape, dtype=mytype)
- b = a + a
- c = 2 * a
- assert isinstance(a @ a.tocsr(), np.ndarray)
- assert isinstance(a @ a.tocoo(), np.ndarray)
- for m in [a, b, c]:
- assert m @ m == a.toarray() @ a.toarray()
- assert m.dtype == mytype
- assert toarray(m).dtype == mytype
- def test_abs(self, spcreator):
- A = np.array([-1, 0, 17, 0, -5, 0, 1, -4, 0, 0, 0, 0], 'd')
- assert_equal(abs(A), abs(spcreator(A)).toarray())
- def test_round(self, spcreator):
- A = np.array([-1.35, 0.56, 17.25, -5.98], 'd')
- Asp = spcreator(A)
- assert_equal(np.around(A, decimals=1), round(Asp, ndigits=1).toarray())
- def test_elementwise_power(self, spcreator):
- A = np.array([-4, -3, -2, -1, 0, 1, 2, 3, 4], 'd')
- Asp = spcreator(A)
- assert_equal(np.power(A, 2), Asp.power(2).toarray())
- # element-wise power function needs a scalar power
- with pytest.raises(NotImplementedError, match='input is not scalar'):
- spcreator(A).power(A)
- def test_real(self, spcreator):
- D = np.array([1 + 3j, 2 - 4j])
- A = spcreator(D)
- assert_equal(A.real.toarray(), D.real)
- def test_imag(self, spcreator):
- D = np.array([1 + 3j, 2 - 4j])
- A = spcreator(D)
- assert_equal(A.imag.toarray(), D.imag)
- def test_mul_scalar(self, spcreator, datsp_math_dtypes):
- for dtype, dat, datsp in datsp_math_dtypes[spcreator]:
- assert_equal(dat * 2, (datsp * 2).toarray())
- assert_equal(dat * 17.3, (datsp * 17.3).toarray())
- def test_rmul_scalar(self, spcreator, datsp_math_dtypes):
- for dtype, dat, datsp in datsp_math_dtypes[spcreator]:
- assert_equal(2 * dat, (2 * datsp).toarray())
- assert_equal(17.3 * dat, (17.3 * datsp).toarray())
- def test_sub(self, spcreator, datsp_math_dtypes):
- for dtype, dat, datsp in datsp_math_dtypes[spcreator]:
- if dtype == np.dtype('bool'):
- # boolean array subtraction deprecated in 1.9.0
- continue
- assert_equal((datsp - datsp).toarray(), np.zeros(4))
- assert_equal((datsp - 0).toarray(), dat)
- A = spcreator([1, -4, 0, 2], dtype='d')
- assert_equal((datsp - A).toarray(), dat - A.toarray())
- assert_equal((A - datsp).toarray(), A.toarray() - dat)
- # test broadcasting
- assert_equal(datsp.toarray() - dat[0], dat - dat[0])
- def test_add0(self, spcreator, datsp_math_dtypes):
- for dtype, dat, datsp in datsp_math_dtypes[spcreator]:
- # Adding 0 to a sparse matrix
- assert_equal((datsp + 0).toarray(), dat)
- # use sum (which takes 0 as a starting value)
- sumS = sum([k * datsp for k in range(1, 3)])
- sumD = sum([k * dat for k in range(1, 3)])
- assert_allclose(sumS.toarray(), sumD)
- def test_elementwise_multiply(self, spcreator):
- # real/real
- A = np.array([4, 0, 9])
- B = np.array([0, 7, -1])
- Asp = spcreator(A)
- Bsp = spcreator(B)
- assert_allclose(Asp.multiply(Bsp).toarray(), A * B) # sparse/sparse
- assert_allclose(Asp.multiply(B).toarray(), A * B) # sparse/dense
- # complex/complex
- C = np.array([1 - 2j, 0 + 5j, -1 + 0j])
- D = np.array([5 + 2j, 7 - 3j, -2 + 1j])
- Csp = spcreator(C)
- Dsp = spcreator(D)
- assert_allclose(Csp.multiply(Dsp).toarray(), C * D) # sparse/sparse
- assert_allclose(Csp.multiply(D).toarray(), C * D) # sparse/dense
- # real/complex
- assert_allclose(Asp.multiply(Dsp).toarray(), A * D) # sparse/sparse
- assert_allclose(Asp.multiply(D).toarray(), A * D) # sparse/dense
- def test_elementwise_multiply_broadcast(self, spcreator):
- A = np.array([4])
- B = np.array([[-9]])
- C = np.array([1, -1, 0])
- D = np.array([[7, 9, -9]])
- E = np.array([[3], [2], [1]])
- F = np.array([[8, 6, 3], [-4, 3, 2], [6, 6, 6]])
- G = [1, 2, 3]
- H = np.ones((3, 4))
- J = H.T
- K = np.array([[0]])
- L = np.array([[[1, 2], [0, 1]]])
- # Some arrays can't be cast as spmatrices (A, C, L) so leave
- # them out.
- Asp = spcreator(A)
- Csp = spcreator(C)
- Gsp = spcreator(G)
- # 2d arrays
- Bsp = spcreator(B)
- Dsp = spcreator(D)
- Esp = spcreator(E)
- Fsp = spcreator(F)
- Hsp = spcreator(H)
- Hspp = spcreator(H[0, None])
- Jsp = spcreator(J)
- Jspp = spcreator(J[:, 0, None])
- Ksp = spcreator(K)
- matrices = [A, B, C, D, E, F, G, H, J, K, L]
- spmatrices = [Asp, Bsp, Csp, Dsp, Esp, Fsp, Gsp, Hsp, Hspp, Jsp, Jspp, Ksp]
- sp1dmatrices = [Asp, Csp, Gsp]
- # sparse/sparse
- for i in sp1dmatrices:
- for j in spmatrices:
- try:
- dense_mult = i.toarray() * j.toarray()
- except ValueError:
- with pytest.raises(ValueError, match='inconsistent shapes'):
- i.multiply(j)
- continue
- sp_mult = i.multiply(j)
- assert_allclose(sp_mult.toarray(), dense_mult)
- # sparse/dense
- for i in sp1dmatrices:
- for j in matrices:
- try:
- dense_mult = i.toarray() * j
- except TypeError:
- continue
- except ValueError:
- matchme = 'broadcast together|inconsistent shapes'
- with pytest.raises(ValueError, match=matchme):
- i.multiply(j)
- continue
- try:
- sp_mult = i.multiply(j)
- except ValueError:
- continue
- assert_allclose(toarray(sp_mult), dense_mult)
- def test_elementwise_divide(self, spcreator, dat1d):
- datsp = spcreator(dat1d)
- expected = np.array([1, np.nan, 1, np.nan])
- actual = datsp / datsp
- # need assert_array_equal to handle nan values
- np.testing.assert_array_equal(actual, expected)
- denom = spcreator([1, 0, 0, 4], dtype='d')
- expected = [3, np.nan, np.inf, 0]
- np.testing.assert_array_equal(datsp / denom, expected)
- # complex
- A = np.array([1 - 2j, 0 + 5j, -1 + 0j])
- B = np.array([5 + 2j, 7 - 3j, -2 + 1j])
- Asp = spcreator(A)
- Bsp = spcreator(B)
- assert_allclose(Asp / Bsp, A / B)
- # integer
- A = np.array([1, 2, 3])
- B = np.array([0, 1, 2])
- Asp = spcreator(A)
- Bsp = spcreator(B)
- with np.errstate(divide='ignore'):
- assert_equal(Asp / Bsp, A / B)
- # mismatching sparsity patterns
- A = np.array([0, 1])
- B = np.array([1, 0])
- Asp = spcreator(A)
- Bsp = spcreator(B)
- with np.errstate(divide='ignore', invalid='ignore'):
- assert_equal(Asp / Bsp, A / B)
- def test_pow(self, spcreator):
- A = np.array([1, 0, 2, 0])
- B = spcreator(A)
- # unusual exponents
- with pytest.raises(ValueError, match='negative integer powers'):
- B**-1
- with pytest.raises(NotImplementedError, match='zero power'):
- B**0
- for exponent in [1, 2, 3, 2.2]:
- ret_sp = B**exponent
- ret_np = A**exponent
- assert_equal(ret_sp.toarray(), ret_np)
- assert_equal(ret_sp.dtype, ret_np.dtype)
- def test_dot_scalar(self, spcreator, dat1d):
- A = spcreator(dat1d)
- scalar = 10
- actual = A.dot(scalar)
- expected = A * scalar
- assert_allclose(actual.toarray(), expected.toarray())
- def test_matmul(self, spcreator):
- Msp = spcreator([2, 0, 3.0])
- B = spcreator(np.array([[0, 1], [1, 0], [0, 2]], 'd'))
- col = np.array([[1, 2, 3]]).T
- # check sparse @ dense 2d column
- assert_allclose(Msp @ col, Msp.toarray() @ col)
- # check sparse1d @ sparse2d, sparse1d @ dense2d, dense1d @ sparse2d
- assert_allclose((Msp @ B).toarray(), (Msp @ B).toarray())
- assert_allclose(Msp.toarray() @ B, (Msp @ B).toarray())
- assert_allclose(Msp @ B.toarray(), (Msp @ B).toarray())
- # check sparse1d @ dense1d, sparse1d @ sparse1d
- V = np.array([0, 0, 1])
- assert_allclose(Msp @ V, Msp.toarray() @ V)
- Vsp = spcreator(V)
- Msp_Vsp = Msp @ Vsp
- assert isinstance(Msp_Vsp, np.ndarray)
- assert Msp_Vsp.shape == ()
- # output is 0-dim ndarray
- assert_allclose(np.array(3), Msp_Vsp)
- assert_allclose(np.array(3), Msp.toarray() @ Vsp)
- assert_allclose(np.array(3), Msp @ Vsp.toarray())
- assert_allclose(np.array(3), Msp.toarray() @ Vsp.toarray())
- # check error on matrix-scalar
- with pytest.raises(ValueError, match='Scalar operands are not allowed'):
- Msp @ 1
- with pytest.raises(ValueError, match='Scalar operands are not allowed'):
- 1 @ Msp
- def test_sub_dense(self, spcreator, datsp_math_dtypes):
- # subtracting a dense matrix to/from a sparse matrix
- for dtype, dat, datsp in datsp_math_dtypes[spcreator]:
- if dtype == np.dtype('bool'):
- # boolean array subtraction deprecated in 1.9.0
- continue
- # Manually add to avoid upcasting from scalar
- # multiplication.
- sum1 = (dat + dat + dat) - datsp
- assert_equal(sum1, dat + dat)
- sum2 = (datsp + datsp + datsp) - dat
- assert_equal(sum2, dat + dat)
- def test_size_zero_matrix_arithmetic(self, spcreator):
- # Test basic matrix arithmetic with shapes like 0, (1, 0), (0, 3), etc.
- mat = np.array([])
- a = mat.reshape(0)
- d = mat.reshape((1, 0))
- f = np.ones([5, 5])
- asp = spcreator(a)
- dsp = spcreator(d)
- # bad shape for addition
- with pytest.raises(ValueError, match='inconsistent shapes'):
- asp.__add__(dsp)
- # matrix product.
- assert_equal(asp.dot(asp), np.dot(a, a))
- # bad matrix products
- with pytest.raises(ValueError, match='dimension mismatch|shapes.*not aligned'):
- asp.dot(f)
- # elemente-wise multiplication
- assert_equal(asp.multiply(asp).toarray(), np.multiply(a, a))
- assert_equal(asp.multiply(a).toarray(), np.multiply(a, a))
- assert_equal(asp.multiply(6).toarray(), np.multiply(a, 6))
- # bad element-wise multiplication
- with pytest.raises(ValueError, match='inconsistent shapes'):
- asp.multiply(f)
- # Addition
- assert_equal(asp.__add__(asp).toarray(), a.__add__(a))
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