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- import os
- import os.path
- import warnings
- import numpy as np
- from scipy._lib._array_api import (
- is_torch,
- xp_assert_equal,
- xp_assert_close,
- assert_array_almost_equal,
- assert_almost_equal,
- make_xp_test_case,
- )
- import pytest
- from pytest import raises as assert_raises
- import scipy.ndimage as ndimage
- from . import types
- skip_xp_backends = pytest.mark.skip_xp_backends
- IS_WINDOWS_AND_NP1 = os.name == 'nt' and np.__version__ < '2'
- @skip_xp_backends(np_only=True, reason='test internal numpy-only helpers')
- class Test_measurements_stats:
- """ndimage._measurements._stats() is a utility used by other functions.
- Since internal ndimage/_measurements.py code is NumPy-only,
- so is this this test class.
- """
- def test_a(self, xp):
- x = [0, 1, 2, 6]
- labels = [0, 0, 1, 1]
- index = [0, 1]
- for shp in [(4,), (2, 2)]:
- x = np.array(x).reshape(shp)
- labels = np.array(labels).reshape(shp)
- counts, sums = ndimage._measurements._stats(
- x, labels=labels, index=index)
- dtype_arg = {'dtype': np.int64} if IS_WINDOWS_AND_NP1 else {}
- xp_assert_equal(counts, np.asarray([2, 2], **dtype_arg))
- xp_assert_equal(sums, np.asarray([1.0, 8.0]))
- def test_b(self, xp):
- # Same data as test_a, but different labels. The label 9 exceeds the
- # length of 'labels', so this test will follow a different code path.
- x = [0, 1, 2, 6]
- labels = [0, 0, 9, 9]
- index = [0, 9]
- for shp in [(4,), (2, 2)]:
- x = np.array(x).reshape(shp)
- labels = np.array(labels).reshape(shp)
- counts, sums = ndimage._measurements._stats(
- x, labels=labels, index=index)
- dtype_arg = {'dtype': np.int64} if IS_WINDOWS_AND_NP1 else {}
- xp_assert_equal(counts, np.asarray([2, 2], **dtype_arg))
- xp_assert_equal(sums, np.asarray([1.0, 8.0]))
- def test_a_centered(self, xp):
- x = [0, 1, 2, 6]
- labels = [0, 0, 1, 1]
- index = [0, 1]
- for shp in [(4,), (2, 2)]:
- x = np.array(x).reshape(shp)
- labels = np.array(labels).reshape(shp)
- counts, sums, centers = ndimage._measurements._stats(
- x, labels=labels, index=index, centered=True)
- dtype_arg = {'dtype': np.int64} if IS_WINDOWS_AND_NP1 else {}
- xp_assert_equal(counts, np.asarray([2, 2], **dtype_arg))
- xp_assert_equal(sums, np.asarray([1.0, 8.0]))
- xp_assert_equal(centers, np.asarray([0.5, 8.0]))
- def test_b_centered(self, xp):
- x = [0, 1, 2, 6]
- labels = [0, 0, 9, 9]
- index = [0, 9]
- for shp in [(4,), (2, 2)]:
- x = np.array(x).reshape(shp)
- labels = np.array(labels).reshape(shp)
- counts, sums, centers = ndimage._measurements._stats(
- x, labels=labels, index=index, centered=True)
- dtype_arg = {'dtype': np.int64} if IS_WINDOWS_AND_NP1 else {}
- xp_assert_equal(counts, np.asarray([2, 2], **dtype_arg))
- xp_assert_equal(sums, np.asarray([1.0, 8.0]))
- xp_assert_equal(centers, np.asarray([0.5, 8.0]))
- def test_nonint_labels(self, xp):
- x = [0, 1, 2, 6]
- labels = [0.0, 0.0, 9.0, 9.0]
- index = [0.0, 9.0]
- for shp in [(4,), (2, 2)]:
- x = np.array(x).reshape(shp)
- labels = np.array(labels).reshape(shp)
- counts, sums, centers = ndimage._measurements._stats(
- x, labels=labels, index=index, centered=True)
- dtype_arg = {'dtype': np.int64} if IS_WINDOWS_AND_NP1 else {}
- xp_assert_equal(counts, np.asarray([2, 2], **dtype_arg))
- xp_assert_equal(sums, np.asarray([1.0, 8.0]))
- xp_assert_equal(centers, np.asarray([0.5, 8.0]))
- @skip_xp_backends(np_only=True, reason='test internal numpy-only helpers')
- class Test_measurements_select:
- """ndimage._measurements._select() is a utility used by other functions."""
- def test_basic(self, xp):
- x = [0, 1, 6, 2]
- cases = [
- ([0, 0, 1, 1], [0, 1]), # "Small" integer labels
- ([0, 0, 9, 9], [0, 9]), # A label larger than len(labels)
- ([0.0, 0.0, 7.0, 7.0], [0.0, 7.0]), # Non-integer labels
- ]
- for labels, index in cases:
- result = ndimage._measurements._select(
- x, labels=labels, index=index)
- assert len(result) == 0
- result = ndimage._measurements._select(
- x, labels=labels, index=index, find_max=True)
- assert len(result) == 1
- xp_assert_equal(result[0], [1, 6])
- result = ndimage._measurements._select(
- x, labels=labels, index=index, find_min=True)
- assert len(result) == 1
- xp_assert_equal(result[0], [0, 2])
- result = ndimage._measurements._select(
- x, labels=labels, index=index, find_min=True,
- find_min_positions=True)
- assert len(result) == 2
- xp_assert_equal(result[0], [0, 2])
- xp_assert_equal(result[1], [0, 3])
- assert result[1].dtype.kind == 'i'
- result = ndimage._measurements._select(
- x, labels=labels, index=index, find_max=True,
- find_max_positions=True)
- assert len(result) == 2
- xp_assert_equal(result[0], [1, 6])
- xp_assert_equal(result[1], [1, 2])
- assert result[1].dtype.kind == 'i'
- @make_xp_test_case(ndimage.label)
- def test_label01(xp):
- data = xp.ones(())
- out, n = ndimage.label(data)
- assert out == 1
- assert n == 1
- @make_xp_test_case(ndimage.label)
- def test_label02(xp):
- data = xp.zeros(())
- out, n = ndimage.label(data)
- assert out == 0
- assert n == 0
- @make_xp_test_case(ndimage.label)
- def test_label03(xp):
- data = xp.ones([1])
- out, n = ndimage.label(data)
- assert_array_almost_equal(out, xp.asarray([1]))
- assert n == 1
- @make_xp_test_case(ndimage.label)
- def test_label04(xp):
- data = xp.zeros([1])
- out, n = ndimage.label(data)
- assert_array_almost_equal(out, xp.asarray([0]))
- assert n == 0
- @make_xp_test_case(ndimage.label)
- def test_label05(xp):
- data = xp.ones([5])
- out, n = ndimage.label(data)
- assert_array_almost_equal(out, xp.asarray([1, 1, 1, 1, 1]))
- assert n == 1
- @make_xp_test_case(ndimage.label)
- def test_label06(xp):
- data = xp.asarray([1, 0, 1, 1, 0, 1])
- out, n = ndimage.label(data)
- assert_array_almost_equal(out, xp.asarray([1, 0, 2, 2, 0, 3]))
- assert n == 3
- @make_xp_test_case(ndimage.label)
- def test_label07(xp):
- data = xp.asarray([[0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0]])
- out, n = ndimage.label(data)
- assert_array_almost_equal(out, xp.asarray(
- [[0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0]]))
- assert n == 0
- @make_xp_test_case(ndimage.label)
- def test_label08(xp):
- data = xp.asarray([[1, 0, 0, 0, 0, 0],
- [0, 0, 1, 1, 0, 0],
- [0, 0, 1, 1, 1, 0],
- [1, 1, 0, 0, 0, 0],
- [1, 1, 0, 0, 0, 0],
- [0, 0, 0, 1, 1, 0]])
- out, n = ndimage.label(data)
- assert_array_almost_equal(out, xp.asarray([[1, 0, 0, 0, 0, 0],
- [0, 0, 2, 2, 0, 0],
- [0, 0, 2, 2, 2, 0],
- [3, 3, 0, 0, 0, 0],
- [3, 3, 0, 0, 0, 0],
- [0, 0, 0, 4, 4, 0]]))
- assert n == 4
- @make_xp_test_case(ndimage.label)
- def test_label09(xp):
- data = xp.asarray([[1, 0, 0, 0, 0, 0],
- [0, 0, 1, 1, 0, 0],
- [0, 0, 1, 1, 1, 0],
- [1, 1, 0, 0, 0, 0],
- [1, 1, 0, 0, 0, 0],
- [0, 0, 0, 1, 1, 0]])
- struct = ndimage.generate_binary_structure(2, 2)
- struct = xp.asarray(struct)
- out, n = ndimage.label(data, struct)
- assert_array_almost_equal(out, xp.asarray([[1, 0, 0, 0, 0, 0],
- [0, 0, 2, 2, 0, 0],
- [0, 0, 2, 2, 2, 0],
- [2, 2, 0, 0, 0, 0],
- [2, 2, 0, 0, 0, 0],
- [0, 0, 0, 3, 3, 0]]))
- assert n == 3
- @make_xp_test_case(ndimage.label)
- def test_label10(xp):
- data = xp.asarray([[0, 0, 0, 0, 0, 0],
- [0, 1, 1, 0, 1, 0],
- [0, 1, 1, 1, 1, 0],
- [0, 0, 0, 0, 0, 0]])
- struct = ndimage.generate_binary_structure(2, 2)
- struct = xp.asarray(struct)
- out, n = ndimage.label(data, struct)
- assert_array_almost_equal(out, xp.asarray([[0, 0, 0, 0, 0, 0],
- [0, 1, 1, 0, 1, 0],
- [0, 1, 1, 1, 1, 0],
- [0, 0, 0, 0, 0, 0]]))
- assert n == 1
- @make_xp_test_case(ndimage.label)
- def test_label11(xp):
- for type in types:
- dtype = getattr(xp, type)
- data = xp.asarray([[1, 0, 0, 0, 0, 0],
- [0, 0, 1, 1, 0, 0],
- [0, 0, 1, 1, 1, 0],
- [1, 1, 0, 0, 0, 0],
- [1, 1, 0, 0, 0, 0],
- [0, 0, 0, 1, 1, 0]], dtype=dtype)
- out, n = ndimage.label(data)
- expected = [[1, 0, 0, 0, 0, 0],
- [0, 0, 2, 2, 0, 0],
- [0, 0, 2, 2, 2, 0],
- [3, 3, 0, 0, 0, 0],
- [3, 3, 0, 0, 0, 0],
- [0, 0, 0, 4, 4, 0]]
- expected = xp.asarray(expected)
- assert_array_almost_equal(out, expected)
- assert n == 4
- @skip_xp_backends(np_only=True, reason='inplace output is numpy-specific')
- @make_xp_test_case(ndimage.label)
- def test_label11_inplace(xp):
- for type in types:
- dtype = getattr(xp, type)
- data = xp.asarray([[1, 0, 0, 0, 0, 0],
- [0, 0, 1, 1, 0, 0],
- [0, 0, 1, 1, 1, 0],
- [1, 1, 0, 0, 0, 0],
- [1, 1, 0, 0, 0, 0],
- [0, 0, 0, 1, 1, 0]], dtype=dtype)
- n = ndimage.label(data, output=data)
- expected = [[1, 0, 0, 0, 0, 0],
- [0, 0, 2, 2, 0, 0],
- [0, 0, 2, 2, 2, 0],
- [3, 3, 0, 0, 0, 0],
- [3, 3, 0, 0, 0, 0],
- [0, 0, 0, 4, 4, 0]]
- expected = xp.asarray(expected)
- assert_array_almost_equal(data, expected)
- assert n == 4
- @make_xp_test_case(ndimage.label)
- def test_label12(xp):
- for type in types:
- dtype = getattr(xp, type)
- data = xp.asarray([[0, 0, 0, 0, 1, 1],
- [0, 0, 0, 0, 0, 1],
- [0, 0, 1, 0, 1, 1],
- [0, 0, 1, 1, 1, 1],
- [0, 0, 0, 1, 1, 0]], dtype=dtype)
- out, n = ndimage.label(data)
- expected = [[0, 0, 0, 0, 1, 1],
- [0, 0, 0, 0, 0, 1],
- [0, 0, 1, 0, 1, 1],
- [0, 0, 1, 1, 1, 1],
- [0, 0, 0, 1, 1, 0]]
- expected = xp.asarray(expected)
- assert_array_almost_equal(out, expected)
- assert n == 1
- @make_xp_test_case(ndimage.label)
- def test_label13(xp):
- for type in types:
- dtype = getattr(xp, type)
- data = xp.asarray([[1, 0, 1, 1, 1, 0, 1, 1, 1, 0, 1],
- [1, 1, 1, 0, 1, 1, 1, 0, 1, 1, 1],
- [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1],
- [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]],
- dtype=dtype)
- out, n = ndimage.label(data)
- expected = [[1, 0, 1, 1, 1, 0, 1, 1, 1, 0, 1],
- [1, 1, 1, 0, 1, 1, 1, 0, 1, 1, 1],
- [1, 0, 0, 0, 0, 0, 0, 0, 0, 0, 1],
- [1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]]
- expected = xp.asarray(expected)
- assert_array_almost_equal(out, expected)
- assert n == 1
- @skip_xp_backends(np_only=True, exceptions=["cupy"],
- reason='output=dtype is numpy-specific')
- @make_xp_test_case(ndimage.label)
- def test_label_output_typed(xp):
- data = xp.ones([5])
- for t in types:
- dtype = getattr(xp, t)
- output = xp.zeros([5], dtype=dtype)
- n = ndimage.label(data, output=output)
- assert_array_almost_equal(output,
- xp.ones(output.shape, dtype=output.dtype))
- assert n == 1
- @skip_xp_backends(np_only=True, exceptions=["cupy"],
- reason='output=dtype is numpy-specific')
- @make_xp_test_case(ndimage.label)
- def test_label_output_dtype(xp):
- data = xp.ones([5])
- for t in types:
- dtype = getattr(xp, t)
- output, n = ndimage.label(data, output=dtype)
- assert_array_almost_equal(output,
- xp.ones(output.shape, dtype=output.dtype))
- assert output.dtype == t
- @skip_xp_backends(np_only=True, reason="in-place output is numpy-specific")
- @make_xp_test_case(ndimage.label)
- def test_label_output_wrong_size(xp):
- data = xp.ones([5])
- for t in types:
- dtype = getattr(xp, t)
- output = xp.zeros([10], dtype=dtype)
- assert_raises(ValueError, ndimage.label, data, output=output)
- @make_xp_test_case(ndimage.label)
- def test_label_structuring_elements(xp):
- data = np.loadtxt(os.path.join(os.path.dirname(
- __file__), "data", "label_inputs.txt"))
- strels = np.loadtxt(os.path.join(
- os.path.dirname(__file__), "data", "label_strels.txt"))
- results = np.loadtxt(os.path.join(
- os.path.dirname(__file__), "data", "label_results.txt"))
- data = data.reshape((-1, 7, 7))
- strels = strels.reshape((-1, 3, 3))
- results = results.reshape((-1, 7, 7))
- data = xp.asarray(data)
- strels = xp.asarray(strels)
- results = xp.asarray(results)
- r = 0
- for i in range(data.shape[0]):
- d = data[i, :, :]
- for j in range(strels.shape[0]):
- s = strels[j, :, :]
- xp_assert_equal(ndimage.label(d, s)[0], results[r, :, :], check_dtype=False)
- r += 1
- @make_xp_test_case(ndimage.label, ndimage.find_objects)
- def test_ticket_742(xp):
- def SE(img, thresh=.7, size=4):
- mask = img > thresh
- rank = len(mask.shape)
- struct = ndimage.generate_binary_structure(rank, rank)
- struct = xp.asarray(struct)
- la, co = ndimage.label(mask,
- struct)
- _ = ndimage.find_objects(la)
- if np.dtype(np.intp) != np.dtype('i'):
- shape = (3, 1240, 1240)
- a = np.random.rand(np.prod(shape)).reshape(shape)
- a = xp.asarray(a)
- # shouldn't crash
- SE(a)
- @make_xp_test_case(ndimage.label)
- def test_gh_issue_3025(xp):
- """Github issue #3025 - improper merging of labels"""
- d = np.zeros((60, 320))
- d[:, :257] = 1
- d[:, 260:] = 1
- d[36, 257] = 1
- d[35, 258] = 1
- d[35, 259] = 1
- d = xp.asarray(d)
- assert ndimage.label(d, xp.ones((3, 3)))[1] == 1
- @make_xp_test_case(ndimage.label, ndimage.find_objects)
- class TestFindObjects:
- def test_label_default_dtype(self, xp):
- test_array = np.random.rand(10, 10)
- test_array = xp.asarray(test_array)
- label, no_features = ndimage.label(test_array > 0.5)
- assert label.dtype in (xp.int32, xp.int64)
- # Shouldn't raise an exception
- ndimage.find_objects(label)
- def test_find_objects01(self, xp):
- data = xp.ones([], dtype=xp.int64)
- out = ndimage.find_objects(data)
- assert out == [()]
- def test_find_objects02(self, xp):
- data = xp.zeros([], dtype=xp.int64)
- out = ndimage.find_objects(data)
- assert out == []
- def test_find_objects03(self, xp):
- data = xp.ones([1], dtype=xp.int64)
- out = ndimage.find_objects(data)
- assert out == [(slice(0, 1, None),)]
- def test_find_objects04(self, xp):
- data = xp.zeros([1], dtype=xp.int64)
- out = ndimage.find_objects(data)
- assert out == []
- def test_find_objects05(self, xp):
- data = xp.ones([5], dtype=xp.int64)
- out = ndimage.find_objects(data)
- assert out == [(slice(0, 5, None),)]
- def test_find_objects06(self, xp):
- data = xp.asarray([1, 0, 2, 2, 0, 3])
- out = ndimage.find_objects(data)
- assert out == [(slice(0, 1, None),),
- (slice(2, 4, None),),
- (slice(5, 6, None),)]
- def test_find_objects07(self, xp):
- data = xp.asarray([[0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0]])
- out = ndimage.find_objects(data)
- assert out == []
- def test_find_objects08(self, xp):
- data = xp.asarray([[1, 0, 0, 0, 0, 0],
- [0, 0, 2, 2, 0, 0],
- [0, 0, 2, 2, 2, 0],
- [3, 3, 0, 0, 0, 0],
- [3, 3, 0, 0, 0, 0],
- [0, 0, 0, 4, 4, 0]])
- out = ndimage.find_objects(data)
- assert out == [(slice(0, 1, None), slice(0, 1, None)),
- (slice(1, 3, None), slice(2, 5, None)),
- (slice(3, 5, None), slice(0, 2, None)),
- (slice(5, 6, None), slice(3, 5, None))]
- def test_find_objects09(self, xp):
- data = xp.asarray([[1, 0, 0, 0, 0, 0],
- [0, 0, 2, 2, 0, 0],
- [0, 0, 2, 2, 2, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 4, 4, 0]])
- out = ndimage.find_objects(data)
- assert out == [(slice(0, 1, None), slice(0, 1, None)),
- (slice(1, 3, None), slice(2, 5, None)),
- None,
- (slice(5, 6, None), slice(3, 5, None))]
- @make_xp_test_case(ndimage.value_indices)
- def test_value_indices01(xp):
- "Test dictionary keys and entries"
- data = xp.asarray([[1, 0, 0, 0, 0, 0],
- [0, 0, 2, 2, 0, 0],
- [0, 0, 2, 2, 2, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0],
- [0, 0, 0, 4, 4, 0]])
- vi = ndimage.value_indices(data, ignore_value=0)
- true_keys = [1, 2, 4]
- assert list(vi.keys()) == true_keys
- truevi = {k: xp.nonzero(data == k) for k in true_keys}
- vi = ndimage.value_indices(data, ignore_value=0)
- assert vi.keys() == truevi.keys()
- for key in vi.keys():
- assert len(vi[key]) == len(truevi[key])
- for v, true_v in zip(vi[key], truevi[key]):
- xp_assert_equal(v, true_v)
- @make_xp_test_case(ndimage.value_indices)
- def test_value_indices02(xp):
- "Test input checking"
- data = xp.zeros((5, 4), dtype=xp.float32)
- msg = "Parameter 'arr' must be an integer array"
- with assert_raises(ValueError, match=msg):
- ndimage.value_indices(data)
- @make_xp_test_case(ndimage.value_indices)
- def test_value_indices03(xp):
- "Test different input array shapes, from 1-D to 4-D"
- for shape in [(36,), (18, 2), (3, 3, 4), (3, 3, 2, 2)]:
- a = np.asarray((12*[1]+12*[2]+12*[3]), dtype=np.int32)
- a = np.reshape(a, shape)
- trueKeys = np.unique(a)
- a = xp.asarray(a)
- vi = ndimage.value_indices(a)
- assert list(vi.keys()) == list(trueKeys)
- for k in [int(x) for x in trueKeys]:
- trueNdx = xp.nonzero(a == k)
- assert len(vi[k]) == len(trueNdx)
- for vik, true_vik in zip(vi[k], trueNdx):
- xp_assert_equal(vik, true_vik)
- @make_xp_test_case(ndimage.sum)
- def test_sum01(xp):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([], dtype=dtype)
- output = ndimage.sum(input)
- assert output == 0
- @make_xp_test_case(ndimage.sum)
- def test_sum02(xp):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.zeros([0, 4], dtype=dtype)
- output = ndimage.sum(input)
- assert output == 0
- @make_xp_test_case(ndimage.sum)
- def test_sum03(xp):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.ones([], dtype=dtype)
- output = ndimage.sum(input)
- assert_almost_equal(output, xp.asarray(1.0), check_0d=False)
- @make_xp_test_case(ndimage.sum)
- def test_sum04(xp):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([1, 2], dtype=dtype)
- output = ndimage.sum(input)
- assert_almost_equal(output, xp.asarray(3.0), check_0d=False)
- @make_xp_test_case(ndimage.sum)
- def test_sum05(xp):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.sum(input)
- assert_almost_equal(output, xp.asarray(10.0), check_0d=False)
- @make_xp_test_case(ndimage.sum)
- def test_sum06(xp):
- labels = np.asarray([], dtype=bool)
- labels = xp.asarray(labels)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([], dtype=dtype)
- output = ndimage.sum(input, labels=labels)
- assert output == 0
- @make_xp_test_case(ndimage.sum)
- def test_sum07(xp):
- labels = np.ones([0, 4], dtype=bool)
- labels = xp.asarray(labels)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.zeros([0, 4], dtype=dtype)
- output = ndimage.sum(input, labels=labels)
- assert output == 0
- @make_xp_test_case(ndimage.sum)
- def test_sum08(xp):
- labels = np.asarray([1, 0], dtype=bool)
- labels = xp.asarray(labels)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([1, 2], dtype=dtype)
- output = ndimage.sum(input, labels=labels)
- assert output == 1
- @make_xp_test_case(ndimage.sum)
- def test_sum09(xp):
- labels = np.asarray([1, 0], dtype=bool)
- labels = xp.asarray(labels)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.sum(input, labels=labels)
- assert_almost_equal(output, xp.asarray(4.0), check_0d=False)
- @make_xp_test_case(ndimage.sum)
- def test_sum10(xp):
- labels = np.asarray([1, 0], dtype=bool)
- input = np.asarray([[1, 2], [3, 4]], dtype=bool)
- labels = xp.asarray(labels)
- input = xp.asarray(input)
- output = ndimage.sum(input, labels=labels)
- assert_almost_equal(output, xp.asarray(2.0), check_0d=False)
- @make_xp_test_case(ndimage.sum)
- def test_sum11(xp):
- labels = xp.asarray([1, 2], dtype=xp.int8)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.sum(input, labels=labels,
- index=2)
- assert_almost_equal(output, xp.asarray(6.0), check_0d=False)
- @make_xp_test_case(ndimage.sum)
- def test_sum12(xp):
- labels = xp.asarray([[1, 2], [2, 4]], dtype=xp.int8)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.sum(input, labels=labels, index=xp.asarray([4, 8, 2]))
- assert_array_almost_equal(output, xp.asarray([4.0, 0.0, 5.0]))
- @make_xp_test_case(ndimage.sum)
- def test_sum_labels(xp):
- labels = xp.asarray([[1, 2], [2, 4]], dtype=xp.int8)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output_sum = ndimage.sum(input, labels=labels, index=xp.asarray([4, 8, 2]))
- output_labels = ndimage.sum_labels(
- input, labels=labels, index=xp.asarray([4, 8, 2]))
- assert xp.all(output_sum == output_labels)
- assert_array_almost_equal(output_labels, xp.asarray([4.0, 0.0, 5.0]))
- @make_xp_test_case(ndimage.mean)
- def test_mean01(xp):
- labels = np.asarray([1, 0], dtype=bool)
- labels = xp.asarray(labels)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.mean(input, labels=labels)
- assert_almost_equal(output, xp.asarray(2.0), check_0d=False)
- @make_xp_test_case(ndimage.mean)
- def test_mean02(xp):
- labels = np.asarray([1, 0], dtype=bool)
- input = np.asarray([[1, 2], [3, 4]], dtype=bool)
- labels = xp.asarray(labels)
- input = xp.asarray(input)
- output = ndimage.mean(input, labels=labels)
- assert_almost_equal(output, xp.asarray(1.0), check_0d=False)
- @make_xp_test_case(ndimage.mean)
- def test_mean03(xp):
- labels = xp.asarray([1, 2])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.mean(input, labels=labels,
- index=2)
- assert_almost_equal(output, xp.asarray(3.0), check_0d=False)
- @make_xp_test_case(ndimage.mean)
- def test_mean04(xp):
- labels = xp.asarray([[1, 2], [2, 4]], dtype=xp.int8)
- with np.errstate(all='ignore'):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.mean(input, labels=labels,
- index=xp.asarray([4, 8, 2]))
- # XXX: output[[0, 2]] does not work in array-api-strict; annoying
- # assert_array_almost_equal(output[[0, 2]], xp.asarray([4.0, 2.5]))
- assert output[0] == 4.0
- assert output[2] == 2.5
- assert xp.isnan(output[1])
- @make_xp_test_case(ndimage.minimum)
- def test_minimum01(xp):
- labels = np.asarray([1, 0], dtype=bool)
- labels = xp.asarray(labels)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.minimum(input, labels=labels)
- assert_almost_equal(output, xp.asarray(1.0), check_0d=False)
- @make_xp_test_case(ndimage.minimum)
- def test_minimum02(xp):
- labels = np.asarray([1, 0], dtype=bool)
- input = np.asarray([[2, 2], [2, 4]], dtype=bool)
- labels = xp.asarray(labels)
- input = xp.asarray(input)
- output = ndimage.minimum(input, labels=labels)
- assert_almost_equal(output, xp.asarray(1.0), check_0d=False)
- @make_xp_test_case(ndimage.minimum)
- def test_minimum03(xp):
- labels = xp.asarray([1, 2])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.minimum(input, labels=labels,
- index=2)
- assert_almost_equal(output, xp.asarray(2.0), check_0d=False)
- @make_xp_test_case(ndimage.minimum)
- def test_minimum04(xp):
- labels = xp.asarray([[1, 2], [2, 3]])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.minimum(input, labels=labels,
- index=xp.asarray([2, 3, 8]))
- assert_array_almost_equal(output, xp.asarray([2.0, 4.0, 0.0]))
- @make_xp_test_case(ndimage.maximum)
- def test_maximum01(xp):
- labels = np.asarray([1, 0], dtype=bool)
- labels = xp.asarray(labels)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.maximum(input, labels=labels)
- assert_almost_equal(output, xp.asarray(3.0), check_0d=False)
- @make_xp_test_case(ndimage.maximum)
- def test_maximum02(xp):
- labels = np.asarray([1, 0], dtype=bool)
- input = np.asarray([[2, 2], [2, 4]], dtype=bool)
- labels = xp.asarray(labels)
- input = xp.asarray(input)
- output = ndimage.maximum(input, labels=labels)
- assert_almost_equal(output, xp.asarray(1.0), check_0d=False)
- @make_xp_test_case(ndimage.maximum)
- def test_maximum03(xp):
- labels = xp.asarray([1, 2])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.maximum(input, labels=labels,
- index=2)
- assert_almost_equal(output, xp.asarray(4.0), check_0d=False)
- @make_xp_test_case(ndimage.maximum)
- def test_maximum04(xp):
- labels = xp.asarray([[1, 2], [2, 3]])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.maximum(input, labels=labels,
- index=xp.asarray([2, 3, 8]))
- assert_array_almost_equal(output, xp.asarray([3.0, 4.0, 0.0]))
- @make_xp_test_case(ndimage.maximum)
- def test_maximum05(xp):
- # Regression test for ticket #501 (Trac)
- x = xp.asarray([-3, -2, -1])
- assert ndimage.maximum(x) == -1
- @make_xp_test_case(ndimage.median)
- def test_median01(xp):
- a = xp.asarray([[1, 2, 0, 1],
- [5, 3, 0, 4],
- [0, 0, 0, 7],
- [9, 3, 0, 0]])
- labels = xp.asarray([[1, 1, 0, 2],
- [1, 1, 0, 2],
- [0, 0, 0, 2],
- [3, 3, 0, 0]])
- output = ndimage.median(a, labels=labels, index=xp.asarray([1, 2, 3]))
- assert_array_almost_equal(output, xp.asarray([2.5, 4.0, 6.0]))
- @make_xp_test_case(ndimage.median)
- def test_median02(xp):
- a = xp.asarray([[1, 2, 0, 1],
- [5, 3, 0, 4],
- [0, 0, 0, 7],
- [9, 3, 0, 0]])
- output = ndimage.median(a)
- assert_almost_equal(output, xp.asarray(1.0), check_0d=False)
- @make_xp_test_case(ndimage.median)
- def test_median03(xp):
- a = xp.asarray([[1, 2, 0, 1],
- [5, 3, 0, 4],
- [0, 0, 0, 7],
- [9, 3, 0, 0]])
- labels = xp.asarray([[1, 1, 0, 2],
- [1, 1, 0, 2],
- [0, 0, 0, 2],
- [3, 3, 0, 0]])
- output = ndimage.median(a, labels=labels)
- assert_almost_equal(output, xp.asarray(3.0), check_0d=False)
- @make_xp_test_case(ndimage.median)
- def test_median_gh12836_bool(xp):
- # test boolean addition fix on example from gh-12836
- a = np.asarray([1, 1], dtype=bool)
- a = xp.asarray(a)
- output = ndimage.median(a, labels=xp.ones((2,)), index=xp.asarray([1]))
- assert_array_almost_equal(output, xp.asarray([1.0]))
- @make_xp_test_case(ndimage.median)
- def test_median_no_int_overflow(xp):
- # test integer overflow fix on example from gh-12836
- a = xp.asarray([65, 70], dtype=xp.int8)
- output = ndimage.median(a, labels=xp.ones((2,)), index=xp.asarray([1]))
- assert_array_almost_equal(output, xp.asarray([67.5]))
- @make_xp_test_case(ndimage.variance)
- def test_variance01(xp):
- with np.errstate(all='ignore'):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([], dtype=dtype)
- with warnings.catch_warnings():
- warnings.filterwarnings("ignore", "Mean of empty slice", RuntimeWarning)
- output = ndimage.variance(input)
- assert xp.isnan(output)
- @make_xp_test_case(ndimage.variance)
- def test_variance02(xp):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([1], dtype=dtype)
- output = ndimage.variance(input)
- assert_almost_equal(output, xp.asarray(0.0), check_0d=False)
- @make_xp_test_case(ndimage.variance)
- def test_variance03(xp):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([1, 3], dtype=dtype)
- output = ndimage.variance(input)
- assert_almost_equal(output, xp.asarray(1.0), check_0d=False)
- @make_xp_test_case(ndimage.variance)
- def test_variance04(xp):
- input = np.asarray([1, 0], dtype=bool)
- input = xp.asarray(input)
- output = ndimage.variance(input)
- assert_almost_equal(output, xp.asarray(0.25), check_0d=False)
- @make_xp_test_case(ndimage.variance)
- def test_variance05(xp):
- labels = xp.asarray([2, 2, 3])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([1, 3, 8], dtype=dtype)
- output = ndimage.variance(input, labels, 2)
- assert_almost_equal(output, xp.asarray(1.0), check_0d=False)
- @make_xp_test_case(ndimage.variance)
- def test_variance06(xp):
- labels = xp.asarray([2, 2, 3, 3, 4])
- with np.errstate(all='ignore'):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([1, 3, 8, 10, 8], dtype=dtype)
- output = ndimage.variance(input, labels, xp.asarray([2, 3, 4]))
- assert_array_almost_equal(output, xp.asarray([1.0, 1.0, 0.0]))
- @make_xp_test_case(ndimage.standard_deviation)
- def test_standard_deviation01(xp):
- with np.errstate(all='ignore'):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([], dtype=dtype)
- with warnings.catch_warnings():
- warnings.filterwarnings("ignore", "Mean of empty slice", RuntimeWarning)
- output = ndimage.standard_deviation(input)
- assert xp.isnan(output)
- @make_xp_test_case(ndimage.standard_deviation)
- def test_standard_deviation02(xp):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([1], dtype=dtype)
- output = ndimage.standard_deviation(input)
- assert_almost_equal(output, xp.asarray(0.0), check_0d=False)
- @make_xp_test_case(ndimage.standard_deviation)
- def test_standard_deviation03(xp):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([1, 3], dtype=dtype)
- output = ndimage.standard_deviation(input)
- assert_almost_equal(output, xp.asarray(1.0), check_0d=False)
- @make_xp_test_case(ndimage.standard_deviation)
- def test_standard_deviation04(xp):
- input = np.asarray([1, 0], dtype=bool)
- input = xp.asarray(input)
- output = ndimage.standard_deviation(input)
- assert_almost_equal(output, xp.asarray(0.5), check_0d=False)
- @make_xp_test_case(ndimage.standard_deviation)
- def test_standard_deviation05(xp):
- labels = xp.asarray([2, 2, 3])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([1, 3, 8], dtype=dtype)
- output = ndimage.standard_deviation(input, labels, 2)
- assert_almost_equal(output, xp.asarray(1.0), check_0d=False)
- @make_xp_test_case(ndimage.standard_deviation)
- def test_standard_deviation06(xp):
- labels = xp.asarray([2, 2, 3, 3, 4])
- with np.errstate(all='ignore'):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([1, 3, 8, 10, 8], dtype=dtype)
- output = ndimage.standard_deviation(
- input, labels, xp.asarray([2, 3, 4])
- )
- assert_array_almost_equal(output, xp.asarray([1.0, 1.0, 0.0]))
- @make_xp_test_case(ndimage.standard_deviation)
- def test_standard_deviation07(xp):
- labels = xp.asarray([1])
- with np.errstate(all='ignore'):
- for type in types:
- if is_torch(xp) and type == 'uint8':
- pytest.xfail("value cannot be converted to type uint8 "
- "without overflow")
- dtype = getattr(xp, type)
- input = xp.asarray([-0.00619519], dtype=dtype)
- output = ndimage.standard_deviation(input, labels, xp.asarray([1]))
- assert_array_almost_equal(output, xp.asarray([0]))
- @make_xp_test_case(ndimage.minimum_position)
- def test_minimum_position01(xp):
- labels = np.asarray([1, 0], dtype=bool)
- labels = xp.asarray(labels)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.minimum_position(input, labels=labels)
- assert output == (0, 0)
- @make_xp_test_case(ndimage.minimum_position)
- def test_minimum_position02(xp):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[5, 4, 2, 5],
- [3, 7, 0, 2],
- [1, 5, 1, 1]], dtype=dtype)
- output = ndimage.minimum_position(input)
- assert output == (1, 2)
- @make_xp_test_case(ndimage.minimum_position)
- def test_minimum_position03(xp):
- input = np.asarray([[5, 4, 2, 5],
- [3, 7, 0, 2],
- [1, 5, 1, 1]], dtype=bool)
- input = xp.asarray(input)
- output = ndimage.minimum_position(input)
- assert output == (1, 2)
- @make_xp_test_case(ndimage.minimum_position)
- def test_minimum_position04(xp):
- input = np.asarray([[5, 4, 2, 5],
- [3, 7, 1, 2],
- [1, 5, 1, 1]], dtype=bool)
- input = xp.asarray(input)
- output = ndimage.minimum_position(input)
- assert output == (0, 0)
- @make_xp_test_case(ndimage.minimum_position)
- def test_minimum_position05(xp):
- labels = xp.asarray([1, 2, 0, 4])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[5, 4, 2, 5],
- [3, 7, 0, 2],
- [1, 5, 2, 3]], dtype=dtype)
- output = ndimage.minimum_position(input, labels)
- assert output == (2, 0)
- @make_xp_test_case(ndimage.minimum_position)
- def test_minimum_position06(xp):
- labels = xp.asarray([1, 2, 3, 4])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[5, 4, 2, 5],
- [3, 7, 0, 2],
- [1, 5, 1, 1]], dtype=dtype)
- output = ndimage.minimum_position(input, labels, 2)
- assert output == (0, 1)
- @make_xp_test_case(ndimage.minimum_position)
- def test_minimum_position07(xp):
- labels = xp.asarray([1, 2, 3, 4])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[5, 4, 2, 5],
- [3, 7, 0, 2],
- [1, 5, 1, 1]], dtype=dtype)
- output = ndimage.minimum_position(input, labels,
- xp.asarray([2, 3]))
- assert output[0] == (0, 1)
- assert output[1] == (1, 2)
- @make_xp_test_case(ndimage.maximum_position)
- def test_maximum_position01(xp):
- labels = np.asarray([1, 0], dtype=bool)
- labels = xp.asarray(labels)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output = ndimage.maximum_position(input,
- labels=labels)
- assert output == (1, 0)
- @make_xp_test_case(ndimage.maximum_position)
- def test_maximum_position02(xp):
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[5, 4, 2, 5],
- [3, 7, 8, 2],
- [1, 5, 1, 1]], dtype=dtype)
- output = ndimage.maximum_position(input)
- assert output == (1, 2)
- @make_xp_test_case(ndimage.maximum_position)
- def test_maximum_position03(xp):
- input = np.asarray([[5, 4, 2, 5],
- [3, 7, 8, 2],
- [1, 5, 1, 1]], dtype=bool)
- input = xp.asarray(input)
- output = ndimage.maximum_position(input)
- assert output == (0, 0)
- @make_xp_test_case(ndimage.maximum_position)
- def test_maximum_position04(xp):
- labels = xp.asarray([1, 2, 0, 4])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[5, 4, 2, 5],
- [3, 7, 8, 2],
- [1, 5, 1, 1]], dtype=dtype)
- output = ndimage.maximum_position(input, labels)
- assert output == (1, 1)
- @make_xp_test_case(ndimage.maximum_position)
- def test_maximum_position05(xp):
- labels = xp.asarray([1, 2, 0, 4])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[5, 4, 2, 5],
- [3, 7, 8, 2],
- [1, 5, 1, 1]], dtype=dtype)
- output = ndimage.maximum_position(input, labels, 1)
- assert output == (0, 0)
- @make_xp_test_case(ndimage.maximum_position)
- def test_maximum_position06(xp):
- labels = xp.asarray([1, 2, 0, 4])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[5, 4, 2, 5],
- [3, 7, 8, 2],
- [1, 5, 1, 1]], dtype=dtype)
- output = ndimage.maximum_position(input, labels,
- xp.asarray([1, 2]))
- assert output[0] == (0, 0)
- assert output[1] == (1, 1)
- @make_xp_test_case(ndimage.maximum_position)
- def test_maximum_position07(xp):
- # Test float labels
- labels = xp.asarray([1.0, 2.5, 0.0, 4.5])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[5, 4, 2, 5],
- [3, 7, 8, 2],
- [1, 5, 1, 1]], dtype=dtype)
- output = ndimage.maximum_position(input, labels,
- xp.asarray([1.0, 4.5]))
- assert output[0] == (0, 0)
- assert output[1] == (0, 3)
- @make_xp_test_case(ndimage.extrema, ndimage.minimum, ndimage.maximum,
- ndimage.minimum_position, ndimage.maximum_position)
- def test_extrema01(xp):
- labels = np.asarray([1, 0], dtype=bool)
- labels = xp.asarray(labels)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output1 = ndimage.extrema(input, labels=labels)
- output2 = ndimage.minimum(input, labels=labels)
- output3 = ndimage.maximum(input, labels=labels)
- output4 = ndimage.minimum_position(input,
- labels=labels)
- output5 = ndimage.maximum_position(input,
- labels=labels)
- assert output1 == (output2, output3, output4, output5)
- @make_xp_test_case(ndimage.extrema, ndimage.minimum, ndimage.maximum,
- ndimage.minimum_position, ndimage.maximum_position)
- def test_extrema02(xp):
- labels = xp.asarray([1, 2])
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output1 = ndimage.extrema(input, labels=labels,
- index=2)
- output2 = ndimage.minimum(input, labels=labels,
- index=2)
- output3 = ndimage.maximum(input, labels=labels,
- index=2)
- output4 = ndimage.minimum_position(input,
- labels=labels, index=2)
- output5 = ndimage.maximum_position(input,
- labels=labels, index=2)
- assert output1 == (output2, output3, output4, output5)
- @make_xp_test_case(ndimage.extrema, ndimage.minimum, ndimage.maximum,
- ndimage.minimum_position, ndimage.maximum_position)
- def test_extrema03(xp):
- labels = xp.asarray([[1, 2], [2, 3]])
- for type in types:
- if is_torch(xp) and type in ("uint16", "uint32", "uint64"):
- pytest.xfail("https://github.com/pytorch/pytorch/issues/58734")
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 2], [3, 4]], dtype=dtype)
- output1 = ndimage.extrema(input,
- labels=labels,
- index=xp.asarray([2, 3, 8]))
- output2 = ndimage.minimum(input,
- labels=labels,
- index=xp.asarray([2, 3, 8]))
- output3 = ndimage.maximum(input, labels=labels,
- index=xp.asarray([2, 3, 8]))
- output4 = ndimage.minimum_position(input,
- labels=labels,
- index=xp.asarray([2, 3, 8]))
- output5 = ndimage.maximum_position(input,
- labels=labels,
- index=xp.asarray([2, 3, 8]))
- assert_array_almost_equal(output1[0], output2)
- assert_array_almost_equal(output1[1], output3)
- assert output1[2] == output4
- assert output1[3] == output5
- @make_xp_test_case(ndimage.extrema, ndimage.minimum, ndimage.maximum,
- ndimage.minimum_position, ndimage.maximum_position)
- def test_extrema04(xp):
- labels = xp.asarray([1, 2, 0, 4])
- for type in types:
- if is_torch(xp) and type in ("uint16", "uint32", "uint64"):
- pytest.xfail("https://github.com/pytorch/pytorch/issues/58734")
- dtype = getattr(xp, type)
- input = xp.asarray([[5, 4, 2, 5],
- [3, 7, 8, 2],
- [1, 5, 1, 1]], dtype=dtype)
- output1 = ndimage.extrema(input, labels, xp.asarray([1, 2]))
- output2 = ndimage.minimum(input, labels, xp.asarray([1, 2]))
- output3 = ndimage.maximum(input, labels, xp.asarray([1, 2]))
- output4 = ndimage.minimum_position(input, labels,
- xp.asarray([1, 2]))
- output5 = ndimage.maximum_position(input, labels,
- xp.asarray([1, 2]))
- assert_array_almost_equal(output1[0], output2)
- assert_array_almost_equal(output1[1], output3)
- assert output1[2] == output4
- assert output1[3] == output5
- @make_xp_test_case(ndimage.center_of_mass)
- def test_center_of_mass01(xp):
- expected = (0.0, 0.0)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 0], [0, 0]], dtype=dtype)
- output = ndimage.center_of_mass(input)
- assert output == expected
- @make_xp_test_case(ndimage.center_of_mass)
- def test_center_of_mass02(xp):
- expected = (1, 0)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[0, 0], [1, 0]], dtype=dtype)
- output = ndimage.center_of_mass(input)
- assert output == expected
- @make_xp_test_case(ndimage.center_of_mass)
- def test_center_of_mass03(xp):
- expected = (0, 1)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[0, 1], [0, 0]], dtype=dtype)
- output = ndimage.center_of_mass(input)
- assert output == expected
- @make_xp_test_case(ndimage.center_of_mass)
- def test_center_of_mass04(xp):
- expected = (1, 1)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[0, 0], [0, 1]], dtype=dtype)
- output = ndimage.center_of_mass(input)
- assert output == expected
- @make_xp_test_case(ndimage.center_of_mass)
- def test_center_of_mass05(xp):
- expected = (0.5, 0.5)
- for type in types:
- dtype = getattr(xp, type)
- input = xp.asarray([[1, 1], [1, 1]], dtype=dtype)
- output = ndimage.center_of_mass(input)
- assert output == expected
- @make_xp_test_case(ndimage.center_of_mass)
- def test_center_of_mass06(xp):
- expected = (0.5, 0.5)
- input = np.asarray([[1, 2], [3, 1]], dtype=bool)
- input = xp.asarray(input)
- output = ndimage.center_of_mass(input)
- assert output == expected
- @make_xp_test_case(ndimage.center_of_mass)
- def test_center_of_mass07(xp):
- labels = xp.asarray([1, 0])
- expected = (0.5, 0.0)
- input = np.asarray([[1, 2], [3, 1]], dtype=bool)
- input = xp.asarray(input)
- output = ndimage.center_of_mass(input, labels)
- assert output == expected
- @make_xp_test_case(ndimage.center_of_mass)
- def test_center_of_mass08(xp):
- labels = xp.asarray([1, 2])
- expected = (0.5, 1.0)
- input = np.asarray([[5, 2], [3, 1]], dtype=bool)
- input = xp.asarray(input)
- output = ndimage.center_of_mass(input, labels, 2)
- assert output == expected
- @make_xp_test_case(ndimage.center_of_mass)
- def test_center_of_mass09(xp):
- labels = xp.asarray((1, 2))
- expected = xp.asarray([(0.5, 0.0), (0.5, 1.0)], dtype=xp.float64)
- input = np.asarray([[1, 2], [1, 1]], dtype=bool)
- input = xp.asarray(input)
- output = ndimage.center_of_mass(input, labels, xp.asarray([1, 2]))
- xp_assert_equal(xp.asarray(output), xp.asarray(expected))
- @make_xp_test_case(ndimage.histogram)
- def test_histogram01(xp):
- expected = xp.ones(10)
- input = xp.arange(10)
- output = ndimage.histogram(input, 0, 10, 10)
- assert_array_almost_equal(output, expected)
- @make_xp_test_case(ndimage.histogram)
- def test_histogram02(xp):
- labels = xp.asarray([1, 1, 1, 1, 2, 2, 2, 2])
- expected = xp.asarray([0, 2, 0, 1, 1])
- input = xp.asarray([1, 1, 3, 4, 3, 3, 3, 3])
- output = ndimage.histogram(input, 0, 4, 5, labels, 1)
- assert_array_almost_equal(output, expected)
- @skip_xp_backends(np_only=True, reason='object arrays')
- @make_xp_test_case(ndimage.histogram)
- def test_histogram03(xp):
- labels = xp.asarray([1, 0, 1, 1, 2, 2, 2, 2])
- expected1 = xp.asarray([0, 1, 0, 1, 1])
- expected2 = xp.asarray([0, 0, 0, 3, 0])
- input = xp.asarray([1, 1, 3, 4, 3, 5, 3, 3])
- output = ndimage.histogram(input, 0, 4, 5, labels, (1, 2))
- assert_array_almost_equal(output[0], expected1)
- assert_array_almost_equal(output[1], expected2)
- @make_xp_test_case(ndimage.mean, ndimage.variance, ndimage.standard_deviation,
- ndimage.median, ndimage.minimum, ndimage.maximum)
- def test_stat_funcs_2d(xp):
- a = xp.asarray([[5, 6, 0, 0, 0], [8, 9, 0, 0, 0], [0, 0, 0, 3, 5]])
- lbl = xp.asarray([[1, 1, 0, 0, 0], [1, 1, 0, 0, 0], [0, 0, 0, 2, 2]])
- mean = ndimage.mean(a, labels=lbl, index=xp.asarray([1, 2]))
- xp_assert_equal(mean, xp.asarray([7.0, 4.0], dtype=xp.float64))
- var = ndimage.variance(a, labels=lbl, index=xp.asarray([1, 2]))
- xp_assert_equal(var, xp.asarray([2.5, 1.0], dtype=xp.float64))
- std = ndimage.standard_deviation(a, labels=lbl, index=xp.asarray([1, 2]))
- assert_array_almost_equal(std, xp.sqrt(xp.asarray([2.5, 1.0], dtype=xp.float64)))
- med = ndimage.median(a, labels=lbl, index=xp.asarray([1, 2]))
- xp_assert_equal(med, xp.asarray([7.0, 4.0], dtype=xp.float64))
- min = ndimage.minimum(a, labels=lbl, index=xp.asarray([1, 2]))
- xp_assert_equal(min, xp.asarray([5, 3]), check_dtype=False)
- max = ndimage.maximum(a, labels=lbl, index=xp.asarray([1, 2]))
- xp_assert_equal(max, xp.asarray([9, 5]), check_dtype=False)
- @skip_xp_backends("cupy", reason="no watershed_ift on CuPy")
- @make_xp_test_case(ndimage.watershed_ift)
- class TestWatershedIft:
- def test_watershed_ift01(self, xp):
- data = xp.asarray([[0, 0, 0, 0, 0, 0, 0],
- [0, 1, 1, 1, 1, 1, 0],
- [0, 1, 0, 0, 0, 1, 0],
- [0, 1, 0, 0, 0, 1, 0],
- [0, 1, 0, 0, 0, 1, 0],
- [0, 1, 1, 1, 1, 1, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0]], dtype=xp.uint8)
- markers = xp.asarray([[-1, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 1, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0]], dtype=xp.int8)
- structure=xp.asarray([[1, 1, 1],
- [1, 1, 1],
- [1, 1, 1]])
- out = ndimage.watershed_ift(data, markers, structure=structure)
- expected = [[-1, -1, -1, -1, -1, -1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, -1, -1, -1, -1, -1, -1],
- [-1, -1, -1, -1, -1, -1, -1]]
- assert_array_almost_equal(out, xp.asarray(expected))
- def test_watershed_ift02(self, xp):
- data = xp.asarray([[0, 0, 0, 0, 0, 0, 0],
- [0, 1, 1, 1, 1, 1, 0],
- [0, 1, 0, 0, 0, 1, 0],
- [0, 1, 0, 0, 0, 1, 0],
- [0, 1, 0, 0, 0, 1, 0],
- [0, 1, 1, 1, 1, 1, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0]], dtype=xp.uint8)
- markers = xp.asarray([[-1, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 1, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0]], dtype=xp.int8)
- out = ndimage.watershed_ift(data, markers)
- expected = [[-1, -1, -1, -1, -1, -1, -1],
- [-1, -1, 1, 1, 1, -1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, -1, 1, 1, 1, -1, -1],
- [-1, -1, -1, -1, -1, -1, -1],
- [-1, -1, -1, -1, -1, -1, -1]]
- assert_array_almost_equal(out, xp.asarray(expected))
- def test_watershed_ift03(self, xp):
- data = xp.asarray([[0, 0, 0, 0, 0, 0, 0],
- [0, 1, 1, 1, 1, 1, 0],
- [0, 1, 0, 1, 0, 1, 0],
- [0, 1, 0, 1, 0, 1, 0],
- [0, 1, 0, 1, 0, 1, 0],
- [0, 1, 1, 1, 1, 1, 0],
- [0, 0, 0, 0, 0, 0, 0]], dtype=xp.uint8)
- markers = xp.asarray([[0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 2, 0, 3, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, -1]], dtype=xp.int8)
- out = ndimage.watershed_ift(data, markers)
- expected = [[-1, -1, -1, -1, -1, -1, -1],
- [-1, -1, 2, -1, 3, -1, -1],
- [-1, 2, 2, 3, 3, 3, -1],
- [-1, 2, 2, 3, 3, 3, -1],
- [-1, 2, 2, 3, 3, 3, -1],
- [-1, -1, 2, -1, 3, -1, -1],
- [-1, -1, -1, -1, -1, -1, -1]]
- assert_array_almost_equal(out, xp.asarray(expected))
- def test_watershed_ift04(self, xp):
- data = xp.asarray([[0, 0, 0, 0, 0, 0, 0],
- [0, 1, 1, 1, 1, 1, 0],
- [0, 1, 0, 1, 0, 1, 0],
- [0, 1, 0, 1, 0, 1, 0],
- [0, 1, 0, 1, 0, 1, 0],
- [0, 1, 1, 1, 1, 1, 0],
- [0, 0, 0, 0, 0, 0, 0]], dtype=xp.uint8)
- markers = xp.asarray([[0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 2, 0, 3, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, -1]],
- dtype=xp.int8)
- structure=xp.asarray([[1, 1, 1],
- [1, 1, 1],
- [1, 1, 1]])
- out = ndimage.watershed_ift(data, markers, structure=structure)
- expected = [[-1, -1, -1, -1, -1, -1, -1],
- [-1, 2, 2, 3, 3, 3, -1],
- [-1, 2, 2, 3, 3, 3, -1],
- [-1, 2, 2, 3, 3, 3, -1],
- [-1, 2, 2, 3, 3, 3, -1],
- [-1, 2, 2, 3, 3, 3, -1],
- [-1, -1, -1, -1, -1, -1, -1]]
- assert_array_almost_equal(out, xp.asarray(expected))
- def test_watershed_ift05(self, xp):
- data = xp.asarray([[0, 0, 0, 0, 0, 0, 0],
- [0, 1, 1, 1, 1, 1, 0],
- [0, 1, 0, 1, 0, 1, 0],
- [0, 1, 0, 1, 0, 1, 0],
- [0, 1, 0, 1, 0, 1, 0],
- [0, 1, 1, 1, 1, 1, 0],
- [0, 0, 0, 0, 0, 0, 0]], dtype=xp.uint8)
- markers = xp.asarray([[0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 3, 0, 2, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, -1]],
- dtype=xp.int8)
- structure = xp.asarray([[1, 1, 1],
- [1, 1, 1],
- [1, 1, 1]])
- out = ndimage.watershed_ift(data, markers, structure=structure)
- expected = [[-1, -1, -1, -1, -1, -1, -1],
- [-1, 3, 3, 2, 2, 2, -1],
- [-1, 3, 3, 2, 2, 2, -1],
- [-1, 3, 3, 2, 2, 2, -1],
- [-1, 3, 3, 2, 2, 2, -1],
- [-1, 3, 3, 2, 2, 2, -1],
- [-1, -1, -1, -1, -1, -1, -1]]
- assert_array_almost_equal(out, xp.asarray(expected))
- def test_watershed_ift06(self, xp):
- data = xp.asarray([[0, 1, 0, 0, 0, 1, 0],
- [0, 1, 0, 0, 0, 1, 0],
- [0, 1, 0, 0, 0, 1, 0],
- [0, 1, 1, 1, 1, 1, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0]], dtype=xp.uint8)
- markers = xp.asarray([[-1, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 1, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0]], dtype=xp.int8)
- structure=xp.asarray([[1, 1, 1],
- [1, 1, 1],
- [1, 1, 1]])
- out = ndimage.watershed_ift(data, markers, structure=structure)
- expected = [[-1, 1, 1, 1, 1, 1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, -1, -1, -1, -1, -1, -1],
- [-1, -1, -1, -1, -1, -1, -1]]
- assert_array_almost_equal(out, xp.asarray(expected))
- @skip_xp_backends(np_only=True, reason="inplace ops are numpy-specific")
- def test_watershed_ift07(self, xp):
- shape = (7, 6)
- data = np.zeros(shape, dtype=np.uint8)
- data = data.transpose()
- data[...] = np.asarray([[0, 1, 0, 0, 0, 1, 0],
- [0, 1, 0, 0, 0, 1, 0],
- [0, 1, 0, 0, 0, 1, 0],
- [0, 1, 1, 1, 1, 1, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0]], dtype=np.uint8)
- data = xp.asarray(data)
- markers = xp.asarray([[-1, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 1, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0],
- [0, 0, 0, 0, 0, 0, 0]], dtype=xp.int8)
- out = xp.zeros(shape, dtype=xp.int16)
- out = out.T
- structure=xp.asarray([[1, 1, 1],
- [1, 1, 1],
- [1, 1, 1]])
- ndimage.watershed_ift(data, markers, structure=structure,
- output=out)
- expected = [[-1, 1, 1, 1, 1, 1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, 1, 1, 1, 1, 1, -1],
- [-1, -1, -1, -1, -1, -1, -1],
- [-1, -1, -1, -1, -1, -1, -1]]
- assert_array_almost_equal(out, xp.asarray(expected))
- @skip_xp_backends("cupy", reason="no watershed_ift on CuPy")
- def test_watershed_ift08(self, xp):
- # Test cost larger than uint8. See gh-10069.
- data = xp.asarray([[256, 0],
- [0, 0]], dtype=xp.uint16)
- markers = xp.asarray([[1, 0],
- [0, 0]], dtype=xp.int8)
- out = ndimage.watershed_ift(data, markers)
- expected = [[1, 1],
- [1, 1]]
- assert_array_almost_equal(out, xp.asarray(expected))
- @skip_xp_backends("cupy", reason="no watershed_ift on CuPy")
- def test_watershed_ift09(self, xp):
- # Test large cost. See gh-19575
- data = xp.asarray([[xp.iinfo(xp.uint16).max, 0],
- [0, 0]], dtype=xp.uint16)
- markers = xp.asarray([[1, 0],
- [0, 0]], dtype=xp.int8)
- out = ndimage.watershed_ift(data, markers)
- expected = [[1, 1],
- [1, 1]]
- xp_assert_close(out, xp.asarray(expected), check_dtype=False)
- @skip_xp_backends(np_only=True)
- @pytest.mark.parametrize("dt", [np.intc, np.uintc])
- @make_xp_test_case(ndimage.value_indices)
- def test_gh_19423(dt, xp):
- rng = np.random.default_rng(123)
- max_val = 8
- image = rng.integers(low=0, high=max_val, size=(10, 12)).astype(dtype=dt)
- val_idx = ndimage.value_indices(image)
- assert len(val_idx.keys()) == max_val
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