functional.py 132 KB

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  1. """Functional implementations of image augmentation operations.
  2. This module contains low-level functions for various image augmentation techniques including
  3. color transformations, blur effects, tone curve adjustments, noise additions, and other visual
  4. modifications. These functions form the foundation for the transform classes and provide
  5. the core functionality for manipulating image data during the augmentation process.
  6. """
  7. from __future__ import annotations
  8. import math
  9. from collections.abc import Sequence
  10. from typing import Any, Literal
  11. from warnings import warn
  12. import cv2
  13. import numpy as np
  14. from albucore import (
  15. MAX_VALUES_BY_DTYPE,
  16. add,
  17. add_array,
  18. add_constant,
  19. add_weighted,
  20. clip,
  21. clipped,
  22. float32_io,
  23. from_float,
  24. get_num_channels,
  25. is_grayscale_image,
  26. is_rgb_image,
  27. maybe_process_in_chunks,
  28. multiply,
  29. multiply_add,
  30. multiply_by_array,
  31. multiply_by_constant,
  32. normalize_per_image,
  33. power,
  34. preserve_channel_dim,
  35. sz_lut,
  36. uint8_io,
  37. )
  38. import albumentations.augmentations.geometric.functional as fgeometric
  39. from albumentations.augmentations.utils import (
  40. PCA,
  41. non_rgb_error,
  42. )
  43. from albumentations.core.type_definitions import (
  44. MONO_CHANNEL_DIMENSIONS,
  45. NUM_MULTI_CHANNEL_DIMENSIONS,
  46. NUM_RGB_CHANNELS,
  47. )
  48. @uint8_io
  49. @preserve_channel_dim
  50. def shift_hsv(
  51. img: np.ndarray,
  52. hue_shift: float,
  53. sat_shift: float,
  54. val_shift: float,
  55. ) -> np.ndarray:
  56. """Shift the hue, saturation, and value of an image.
  57. Args:
  58. img (np.ndarray): The image to shift.
  59. hue_shift (float): The amount to shift the hue.
  60. sat_shift (float): The amount to shift the saturation.
  61. val_shift (float): The amount to shift the value.
  62. Returns:
  63. np.ndarray: The shifted image.
  64. """
  65. if hue_shift == 0 and sat_shift == 0 and val_shift == 0:
  66. return img
  67. is_gray = is_grayscale_image(img)
  68. if is_gray:
  69. if hue_shift != 0 or sat_shift != 0:
  70. hue_shift = 0
  71. sat_shift = 0
  72. warn(
  73. "HueSaturationValue: hue_shift and sat_shift are not applicable to grayscale image. "
  74. "Set them to 0 or use RGB image",
  75. stacklevel=2,
  76. )
  77. img = cv2.cvtColor(img, cv2.COLOR_GRAY2RGB)
  78. img = cv2.cvtColor(img, cv2.COLOR_RGB2HSV)
  79. hue, sat, val = cv2.split(img)
  80. if hue_shift != 0:
  81. lut_hue = np.arange(0, 256, dtype=np.int16)
  82. lut_hue = np.mod(lut_hue + hue_shift, 180).astype(np.uint8)
  83. hue = sz_lut(hue, lut_hue, inplace=False)
  84. if sat_shift != 0:
  85. # Create a mask for all grayscale pixels (S=0)
  86. # These should remain grayscale regardless of saturation change
  87. grayscale_mask = sat == 0
  88. # Apply saturation shift only to non-white pixels
  89. sat = add_constant(sat, sat_shift, inplace=True)
  90. # Reset saturation for white pixels
  91. sat[grayscale_mask] = 0
  92. if val_shift != 0:
  93. val = add_constant(val, val_shift, inplace=True)
  94. img = cv2.merge((hue, sat, val))
  95. img = cv2.cvtColor(img, cv2.COLOR_HSV2RGB)
  96. return cv2.cvtColor(img, cv2.COLOR_RGB2GRAY) if is_gray else img
  97. @clipped
  98. def solarize(img: np.ndarray, threshold: float) -> np.ndarray:
  99. """Invert all pixel values above a threshold.
  100. Args:
  101. img (np.ndarray): The image to solarize. Can be uint8 or float32.
  102. threshold (float): Normalized threshold value in range [0, 1].
  103. For uint8 images: pixels above threshold * 255 are inverted
  104. For float32 images: pixels above threshold are inverted
  105. Returns:
  106. np.ndarray: Solarized image.
  107. Note:
  108. The threshold is normalized to [0, 1] range for both uint8 and float32 images.
  109. For uint8 images, the threshold is internally scaled by 255.
  110. """
  111. dtype = img.dtype
  112. max_val = MAX_VALUES_BY_DTYPE[dtype]
  113. if dtype == np.uint8:
  114. lut = np.array(
  115. [max_val - i if i >= threshold * max_val else i for i in range(int(max_val) + 1)],
  116. dtype=dtype,
  117. )
  118. prev_shape = img.shape
  119. img = sz_lut(img, lut, inplace=False)
  120. return img if len(prev_shape) == img.ndim else np.expand_dims(img, -1)
  121. return np.where(img >= threshold, max_val - img, img)
  122. @uint8_io
  123. @clipped
  124. def posterize(img: np.ndarray, bits: Literal[1, 2, 3, 4, 5, 6, 7] | list[Literal[1, 2, 3, 4, 5, 6, 7]]) -> np.ndarray:
  125. """Reduce the number of bits for each color channel by keeping only the highest N bits.
  126. Args:
  127. img (np.ndarray): Input image. Can be single or multi-channel.
  128. bits (Literal[1, 2, 3, 4, 5, 6, 7] | list[Literal[1, 2, 3, 4, 5, 6, 7]]): Number of high bits to keep..
  129. Can be either:
  130. - A single value to apply the same bit reduction to all channels
  131. - A list of values to apply different bit reduction per channel.
  132. Length of list must match number of channels in image.
  133. Returns:
  134. np.ndarray: Image with reduced bit depth. Has same shape and dtype as input.
  135. Note:
  136. - The transform keeps the N highest bits and sets all other bits to 0
  137. - For example, if bits=3:
  138. - Original value: 11010110 (214)
  139. - Keep 3 bits: 11000000 (192)
  140. - The number of unique colors per channel will be 2^bits
  141. - Higher bits values = more colors = more subtle effect
  142. - Lower bits values = fewer colors = more dramatic posterization
  143. Examples:
  144. >>> import numpy as np
  145. >>> image = np.random.randint(0, 256, (100, 100, 3), dtype=np.uint8)
  146. >>> # Same posterization for all channels
  147. >>> result = posterize(image, bits=3)
  148. >>> # Different posterization per channel
  149. >>> result = posterize(image, bits=[3, 4, 5]) # RGB channels
  150. """
  151. bits_array = np.uint8(bits)
  152. if not bits_array.shape or len(bits_array) == 1:
  153. lut = np.arange(0, 256, dtype=np.uint8)
  154. mask = ~np.uint8(2 ** (8 - bits_array) - 1)
  155. lut &= mask
  156. return sz_lut(img, lut, inplace=False)
  157. result_img = np.empty_like(img)
  158. for i, channel_bits in enumerate(bits_array):
  159. lut = np.arange(0, 256, dtype=np.uint8)
  160. mask = ~np.uint8(2 ** (8 - channel_bits) - 1)
  161. lut &= mask
  162. result_img[..., i] = sz_lut(img[..., i], lut, inplace=True)
  163. return result_img
  164. def _equalize_pil(img: np.ndarray, mask: np.ndarray | None = None) -> np.ndarray:
  165. histogram = cv2.calcHist([img], [0], mask, [256], (0, 256)).ravel()
  166. h = np.array([_f for _f in histogram if _f])
  167. if len(h) <= 1:
  168. return img.copy()
  169. step = np.sum(h[:-1]) // 255
  170. if not step:
  171. return img.copy()
  172. lut = np.minimum((np.cumsum(histogram) + step // 2) // step, 255).astype(np.uint8)
  173. return sz_lut(img, lut, inplace=True)
  174. def _equalize_cv(img: np.ndarray, mask: np.ndarray | None = None) -> np.ndarray:
  175. if mask is None:
  176. return cv2.equalizeHist(img)
  177. histogram = cv2.calcHist([img], [0], mask, [256], (0, 256)).ravel()
  178. # Find the first non-zero index with a numpy operation
  179. i = np.flatnonzero(histogram)[0] if np.any(histogram) else 255
  180. total = np.sum(histogram)
  181. scale = 255.0 / (total - histogram[i])
  182. # Optimize cumulative sum and scale to generate LUT
  183. cumsum_histogram = np.cumsum(histogram)
  184. lut = np.clip(((cumsum_histogram - cumsum_histogram[i]) * scale).round(), 0, 255).astype(np.uint8)
  185. return sz_lut(img, lut, inplace=True)
  186. def _check_preconditions(
  187. img: np.ndarray,
  188. mask: np.ndarray | None,
  189. by_channels: bool,
  190. ) -> None:
  191. if mask is not None:
  192. if is_rgb_image(mask) and is_grayscale_image(img):
  193. raise ValueError(
  194. f"Wrong mask shape. Image shape: {img.shape}. Mask shape: {mask.shape}",
  195. )
  196. if not by_channels and not is_grayscale_image(mask):
  197. msg = f"When by_channels=False only 1-channel mask supports. Mask shape: {mask.shape}"
  198. raise ValueError(msg)
  199. def _handle_mask(
  200. mask: np.ndarray | None,
  201. i: int | None = None,
  202. ) -> np.ndarray | None:
  203. if mask is None:
  204. return None
  205. mask = mask.astype(
  206. np.uint8,
  207. copy=False,
  208. ) # Use copy=False to avoid unnecessary copying
  209. # Check for grayscale image and avoid slicing if i is None
  210. if i is not None and not is_grayscale_image(mask):
  211. mask = mask[..., i]
  212. return mask
  213. @uint8_io
  214. @preserve_channel_dim
  215. def equalize(
  216. img: np.ndarray,
  217. mask: np.ndarray | None = None,
  218. mode: Literal["cv", "pil"] = "cv",
  219. by_channels: bool = True,
  220. ) -> np.ndarray:
  221. """Apply histogram equalization to the input image.
  222. This function enhances the contrast of the input image by equalizing its histogram.
  223. It supports both grayscale and color images, and can operate on individual channels
  224. or on the luminance channel of the image.
  225. Args:
  226. img (np.ndarray): Input image. Can be grayscale (2D array) or RGB (3D array).
  227. mask (np.ndarray | None): Optional mask to apply the equalization selectively.
  228. If provided, must have the same shape as the input image. Default: None.
  229. mode (ImageMode): The backend to use for equalization. Can be either "cv" for
  230. OpenCV or "pil" for Pillow-style equalization. Default: "cv".
  231. by_channels (bool): If True, applies equalization to each channel independently.
  232. If False, converts the image to YCrCb color space and equalizes only the
  233. luminance channel. Only applicable to color images. Default: True.
  234. Returns:
  235. np.ndarray: Equalized image. The output has the same dtype as the input.
  236. Raises:
  237. ValueError: If the input image or mask have invalid shapes or types.
  238. Note:
  239. - If the input image is not uint8, it will be temporarily converted to uint8
  240. for processing and then converted back to its original dtype.
  241. - For color images, when by_channels=False, the image is converted to YCrCb
  242. color space, equalized on the Y channel, and then converted back to RGB.
  243. - The function preserves the original number of channels in the image.
  244. Example:
  245. >>> import numpy as np
  246. >>> import albumentations as A
  247. >>> image = np.random.randint(0, 256, (100, 100, 3), dtype=np.uint8)
  248. >>> equalized = A.equalize(image, mode="cv", by_channels=True)
  249. >>> assert equalized.shape == image.shape
  250. >>> assert equalized.dtype == image.dtype
  251. """
  252. _check_preconditions(img, mask, by_channels)
  253. function = _equalize_pil if mode == "pil" else _equalize_cv
  254. if is_grayscale_image(img):
  255. return function(img, _handle_mask(mask))
  256. if not by_channels:
  257. result_img = cv2.cvtColor(img, cv2.COLOR_RGB2YCrCb)
  258. result_img[..., 0] = function(result_img[..., 0], _handle_mask(mask))
  259. return cv2.cvtColor(result_img, cv2.COLOR_YCrCb2RGB)
  260. result_img = np.empty_like(img)
  261. for i in range(NUM_RGB_CHANNELS):
  262. _mask = _handle_mask(mask, i)
  263. result_img[..., i] = function(img[..., i], _mask)
  264. return result_img
  265. @uint8_io
  266. def move_tone_curve(
  267. img: np.ndarray,
  268. low_y: float | np.ndarray,
  269. high_y: float | np.ndarray,
  270. ) -> np.ndarray:
  271. """Rescales the relationship between bright and dark areas of the image by manipulating its tone curve.
  272. Args:
  273. img (np.ndarray): Any number of channels
  274. low_y (float | np.ndarray): per-channel or single y-position of a Bezier control point used
  275. to adjust the tone curve, must be in range [0, 1]
  276. high_y (float | np.ndarray): per-channel or single y-position of a Bezier control point used
  277. to adjust image tone curve, must be in range [0, 1]
  278. Returns:
  279. np.ndarray: Image with adjusted tone curve
  280. """
  281. t = np.linspace(0.0, 1.0, 256)
  282. def evaluate_bez(
  283. t: np.ndarray,
  284. low_y: float | np.ndarray,
  285. high_y: float | np.ndarray,
  286. ) -> np.ndarray:
  287. one_minus_t = 1 - t
  288. return (3 * one_minus_t**2 * t * low_y + 3 * one_minus_t * t**2 * high_y + t**3) * 255
  289. num_channels = get_num_channels(img)
  290. if np.isscalar(low_y) and np.isscalar(high_y):
  291. lut = clip(np.rint(evaluate_bez(t, low_y, high_y)), np.uint8, inplace=False)
  292. return sz_lut(img, lut, inplace=False)
  293. if isinstance(low_y, np.ndarray) and isinstance(high_y, np.ndarray):
  294. luts = clip(
  295. np.rint(evaluate_bez(t[:, np.newaxis], low_y, high_y).T),
  296. np.uint8,
  297. inplace=False,
  298. )
  299. return cv2.merge(
  300. [sz_lut(img[:, :, i], np.ascontiguousarray(luts[i]), inplace=False) for i in range(num_channels)],
  301. )
  302. raise TypeError(
  303. f"low_y and high_y must both be of type float or np.ndarray. Got {type(low_y)} and {type(high_y)}",
  304. )
  305. @clipped
  306. def linear_transformation_rgb(
  307. img: np.ndarray,
  308. transformation_matrix: np.ndarray,
  309. ) -> np.ndarray:
  310. """Apply a linear transformation to the RGB channels of an image.
  311. This function applies a linear transformation matrix to the RGB channels of an image.
  312. The transformation matrix is a 3x3 matrix that maps the RGB values to new values.
  313. Args:
  314. img (np.ndarray): Input image. Can be grayscale (2D array) or RGB (3D array).
  315. transformation_matrix (np.ndarray): 3x3 transformation matrix.
  316. Returns:
  317. np.ndarray: Image with the linear transformation applied. The output has the same dtype as the input.
  318. """
  319. return cv2.transform(img, transformation_matrix)
  320. @uint8_io
  321. @preserve_channel_dim
  322. def clahe(
  323. img: np.ndarray,
  324. clip_limit: float,
  325. tile_grid_size: tuple[int, int],
  326. ) -> np.ndarray:
  327. """Apply Contrast Limited Adaptive Histogram Equalization (CLAHE) to the input image.
  328. This function enhances the contrast of the input image using CLAHE. For color images,
  329. it converts the image to the LAB color space, applies CLAHE to the L channel, and then
  330. converts the image back to RGB.
  331. Args:
  332. img (np.ndarray): Input image. Can be grayscale (2D array) or RGB (3D array).
  333. clip_limit (float): Threshold for contrast limiting. Higher values give more contrast.
  334. tile_grid_size (tuple[int, int]): Size of grid for histogram equalization.
  335. Width and height of the grid.
  336. Returns:
  337. np.ndarray: Image with CLAHE applied. The output has the same dtype as the input.
  338. Note:
  339. - If the input image is float32, it's temporarily converted to uint8 for processing
  340. and then converted back to float32.
  341. - For color images, CLAHE is applied only to the luminance channel in the LAB color space.
  342. Raises:
  343. ValueError: If the input image is not 2D or 3D.
  344. Example:
  345. >>> import numpy as np
  346. >>> img = np.random.randint(0, 256, (100, 100, 3), dtype=np.uint8)
  347. >>> result = clahe(img, clip_limit=2.0, tile_grid_size=(8, 8))
  348. >>> assert result.shape == img.shape
  349. >>> assert result.dtype == img.dtype
  350. """
  351. clahe_mat = cv2.createCLAHE(clipLimit=clip_limit, tileGridSize=tile_grid_size)
  352. if is_grayscale_image(img):
  353. return clahe_mat.apply(img)
  354. img_lab = cv2.cvtColor(img, cv2.COLOR_RGB2LAB)
  355. img_lab[:, :, 0] = clahe_mat.apply(img_lab[:, :, 0])
  356. return cv2.cvtColor(img_lab, cv2.COLOR_LAB2RGB)
  357. @uint8_io
  358. @preserve_channel_dim
  359. def image_compression(
  360. img: np.ndarray,
  361. quality: int,
  362. image_type: Literal[".jpg", ".webp"],
  363. ) -> np.ndarray:
  364. """Compress the image using JPEG or WebP compression.
  365. Args:
  366. img (np.ndarray): Input image
  367. quality (int): Quality of compression in range [1, 100]
  368. image_type (Literal[".jpg", ".webp"]): Type of compression to use
  369. Returns:
  370. np.ndarray: Compressed image
  371. """
  372. # Determine the quality flag for compression
  373. quality_flag = cv2.IMWRITE_JPEG_QUALITY if image_type == ".jpg" else cv2.IMWRITE_WEBP_QUALITY
  374. num_channels = get_num_channels(img)
  375. # Prepare to encode and decode
  376. def encode_decode(src_img: np.ndarray, read_mode: int) -> np.ndarray:
  377. _, encoded_img = cv2.imencode(image_type, src_img, (int(quality_flag), quality))
  378. return cv2.imdecode(encoded_img, read_mode)
  379. if num_channels == 1:
  380. # Grayscale image
  381. decoded = encode_decode(img, cv2.IMREAD_GRAYSCALE)
  382. return decoded[..., np.newaxis] # Add channel dimension back
  383. if num_channels in (2, NUM_RGB_CHANNELS):
  384. # 2 channels: pad to 3, or 3 (RGB) channels
  385. padded_img = np.pad(img, ((0, 0), (0, 0), (0, 1)), mode="constant") if num_channels == 2 else img
  386. decoded_bgr = encode_decode(padded_img, cv2.IMREAD_UNCHANGED)
  387. return decoded_bgr[..., :num_channels] # Return only the required number of channels
  388. # More than 3 channels
  389. bgr = img[..., :NUM_RGB_CHANNELS]
  390. decoded_bgr = encode_decode(bgr, cv2.IMREAD_UNCHANGED)
  391. # Process additional channels
  392. extra_channels = [
  393. encode_decode(img[..., i], cv2.IMREAD_GRAYSCALE)[..., np.newaxis] for i in range(NUM_RGB_CHANNELS, num_channels)
  394. ]
  395. return np.dstack([decoded_bgr, *extra_channels])
  396. @uint8_io
  397. def add_snow_bleach(
  398. img: np.ndarray,
  399. snow_point: float,
  400. brightness_coeff: float,
  401. ) -> np.ndarray:
  402. """Adds a simple snow effect to the image by bleaching out pixels.
  403. This function simulates a basic snow effect by increasing the brightness of pixels
  404. that are above a certain threshold (snow_point). It operates in the HLS color space
  405. to modify the lightness channel.
  406. Args:
  407. img (np.ndarray): Input image. Can be either RGB uint8 or float32.
  408. snow_point (float): A float in the range [0, 1], scaled and adjusted to determine
  409. the threshold for pixel modification. Higher values result in less snow effect.
  410. brightness_coeff (float): Coefficient applied to increase the brightness of pixels
  411. below the snow_point threshold. Larger values lead to more pronounced snow effects.
  412. Should be greater than 1.0 for a visible effect.
  413. Returns:
  414. np.ndarray: Image with simulated snow effect. The output has the same dtype as the input.
  415. Note:
  416. - This function converts the image to the HLS color space to modify the lightness channel.
  417. - The snow effect is created by selectively increasing the brightness of pixels.
  418. - This method tends to create a 'bleached' look, which may not be as realistic as more
  419. advanced snow simulation techniques.
  420. - The function automatically handles both uint8 and float32 input images.
  421. The snow effect is created through the following steps:
  422. 1. Convert the image from RGB to HLS color space.
  423. 2. Adjust the snow_point threshold.
  424. 3. Increase the lightness of pixels below the threshold.
  425. 4. Convert the image back to RGB.
  426. Mathematical Formulation:
  427. Let L be the lightness channel in HLS space.
  428. For each pixel (i, j):
  429. If L[i, j] < snow_point:
  430. L[i, j] = L[i, j] * brightness_coeff
  431. Examples:
  432. >>> import numpy as np
  433. >>> import albumentations as A
  434. >>> image = np.random.randint(0, 256, [100, 100, 3], dtype=np.uint8)
  435. >>> snowy_image = A.functional.add_snow_v1(image, snow_point=0.5, brightness_coeff=1.5)
  436. References:
  437. - HLS Color Space: https://en.wikipedia.org/wiki/HSL_and_HSV
  438. - Original implementation: https://github.com/UjjwalSaxena/Automold--Road-Augmentation-Library
  439. """
  440. max_value = MAX_VALUES_BY_DTYPE[np.uint8]
  441. # Precompute snow_point threshold
  442. snow_point = (snow_point * max_value / 2) + (max_value / 3)
  443. # Convert image to HLS color space once and avoid repeated dtype casting
  444. image_hls = cv2.cvtColor(img, cv2.COLOR_RGB2HLS)
  445. lightness_channel = image_hls[:, :, 1].astype(np.float32)
  446. # Utilize boolean indexing for efficient lightness adjustment
  447. mask = lightness_channel < snow_point
  448. lightness_channel[mask] *= brightness_coeff
  449. # Clip the lightness values in place
  450. lightness_channel = clip(lightness_channel, np.uint8, inplace=True)
  451. # Update the lightness channel in the original image
  452. image_hls[:, :, 1] = lightness_channel
  453. # Convert back to RGB
  454. return cv2.cvtColor(image_hls, cv2.COLOR_HLS2RGB)
  455. def generate_snow_textures(
  456. img_shape: tuple[int, int],
  457. random_generator: np.random.Generator,
  458. ) -> tuple[np.ndarray, np.ndarray]:
  459. """Generate snow texture and sparkle mask.
  460. Args:
  461. img_shape (tuple[int, int]): Image shape.
  462. random_generator (np.random.Generator): Random generator to use.
  463. Returns:
  464. tuple[np.ndarray, np.ndarray]: Tuple of (snow_texture, sparkle_mask) arrays.
  465. """
  466. # Generate base snow texture
  467. snow_texture = random_generator.normal(size=img_shape[:2], loc=0.5, scale=0.3)
  468. snow_texture = cv2.GaussianBlur(snow_texture, (0, 0), sigmaX=1, sigmaY=1)
  469. # Generate sparkle mask
  470. sparkle_mask = random_generator.random(img_shape[:2]) > 0.99
  471. return snow_texture, sparkle_mask
  472. @uint8_io
  473. def add_snow_texture(
  474. img: np.ndarray,
  475. snow_point: float,
  476. brightness_coeff: float,
  477. snow_texture: np.ndarray,
  478. sparkle_mask: np.ndarray,
  479. ) -> np.ndarray:
  480. """Add a realistic snow effect to the input image.
  481. This function simulates snowfall by applying multiple visual effects to the image,
  482. including brightness adjustment, snow texture overlay, depth simulation, and color tinting.
  483. The result is a more natural-looking snow effect compared to simple pixel bleaching methods.
  484. Args:
  485. img (np.ndarray): Input image in RGB format.
  486. snow_point (float): Coefficient that controls the amount and intensity of snow.
  487. Should be in the range [0, 1], where 0 means no snow and 1 means maximum snow effect.
  488. brightness_coeff (float): Coefficient for brightness adjustment to simulate the
  489. reflective nature of snow. Should be in the range [0, 1], where higher values
  490. result in a brighter image.
  491. snow_texture (np.ndarray): Snow texture.
  492. sparkle_mask (np.ndarray): Sparkle mask.
  493. Returns:
  494. np.ndarray: Image with added snow effect. The output has the same dtype as the input.
  495. Note:
  496. - The function first converts the image to HSV color space for better control over
  497. brightness and color adjustments.
  498. - A snow texture is generated using Gaussian noise and then filtered for a more
  499. natural appearance.
  500. - A depth effect is simulated, with more snow at the top of the image and less at the bottom.
  501. - A slight blue tint is added to simulate the cool color of snow.
  502. - Random sparkle effects are added to simulate light reflecting off snow crystals.
  503. The snow effect is created through the following steps:
  504. 1. Brightness adjustment in HSV space
  505. 2. Generation of a snow texture using Gaussian noise
  506. 3. Application of a depth effect to the snow texture
  507. 4. Blending of the snow texture with the original image
  508. 5. Addition of a cool blue tint
  509. 6. Addition of sparkle effects
  510. Examples:
  511. >>> import numpy as np
  512. >>> import albumentations as A
  513. >>> image = np.random.randint(0, 256, [100, 100, 3], dtype=np.uint8)
  514. >>> snowy_image = A.functional.add_snow_v2(image, snow_coeff=0.5, brightness_coeff=0.2)
  515. Note:
  516. This function works with both uint8 and float32 image types, automatically
  517. handling the conversion between them.
  518. References:
  519. - Perlin Noise: https://en.wikipedia.org/wiki/Perlin_noise
  520. - HSV Color Space: https://en.wikipedia.org/wiki/HSL_and_HSV
  521. """
  522. max_value = MAX_VALUES_BY_DTYPE[np.uint8]
  523. # Convert to HSV for better color control
  524. img_hsv = cv2.cvtColor(img, cv2.COLOR_RGB2HSV).astype(np.float32)
  525. # Increase brightness
  526. img_hsv[:, :, 2] = np.clip(
  527. img_hsv[:, :, 2] * (1 + brightness_coeff * snow_point),
  528. 0,
  529. max_value,
  530. )
  531. # Generate snow texture
  532. snow_texture = cv2.GaussianBlur(snow_texture, (0, 0), sigmaX=1, sigmaY=1)
  533. # Create depth effect for snow simulation
  534. # More snow accumulates at the top of the image, gradually decreasing towards the bottom
  535. # This simulates natural snow distribution on surfaces
  536. # The effect is achieved using a linear gradient from 1 (full snow) to 0.2 (less snow)
  537. rows = img.shape[0]
  538. depth_effect = np.linspace(1, 0.2, rows)[:, np.newaxis]
  539. snow_texture *= depth_effect
  540. # Apply snow texture
  541. snow_layer = (np.dstack([snow_texture] * 3) * max_value * snow_point).astype(
  542. np.float32,
  543. )
  544. # Blend snow with original image
  545. img_with_snow = cv2.add(img_hsv, snow_layer)
  546. # Add a slight blue tint to simulate cool snow color
  547. blue_tint = np.full_like(img_with_snow, (0.6, 0.75, 1)) # Slight blue in HSV
  548. img_with_snow = cv2.addWeighted(
  549. img_with_snow,
  550. 0.85,
  551. blue_tint,
  552. 0.15 * snow_point,
  553. 0,
  554. )
  555. # Convert back to RGB
  556. img_with_snow = cv2.cvtColor(img_with_snow.astype(np.uint8), cv2.COLOR_HSV2RGB)
  557. # Add some sparkle effects for snow glitter
  558. img_with_snow[sparkle_mask] = [max_value, max_value, max_value]
  559. return img_with_snow
  560. @uint8_io
  561. @preserve_channel_dim
  562. def add_rain(
  563. img: np.ndarray,
  564. slant: float,
  565. drop_length: int,
  566. drop_width: int,
  567. drop_color: tuple[int, int, int],
  568. blur_value: int,
  569. brightness_coefficient: float,
  570. rain_drops: np.ndarray,
  571. ) -> np.ndarray:
  572. """Add rain to an image.
  573. This function adds rain to an image by drawing rain drops on the image.
  574. The rain drops are drawn using the OpenCV function cv2.polylines.
  575. Args:
  576. img (np.ndarray): The image to add rain to.
  577. slant (float): The slant of the rain drops.
  578. drop_length (int): The length of the rain drops.
  579. drop_width (int): The width of the rain drops.
  580. drop_color (tuple[int, int, int]): The color of the rain drops.
  581. blur_value (int): The blur value of the rain drops.
  582. brightness_coefficient (float): The brightness coefficient of the rain drops.
  583. rain_drops (np.ndarray): The rain drops to draw on the image.
  584. Returns:
  585. np.ndarray: The image with rain added.
  586. """
  587. if not rain_drops.size:
  588. return img.copy()
  589. img = img.copy()
  590. # Pre-allocate rain layer
  591. rain_layer = np.zeros_like(img, dtype=np.uint8)
  592. # Calculate end points correctly
  593. end_points = rain_drops + np.array([[slant, drop_length]]) # This creates correct shape
  594. # Stack arrays properly - both must be same shape arrays
  595. lines = np.stack((rain_drops, end_points), axis=1) # Use tuple and proper axis
  596. cv2.polylines(
  597. rain_layer,
  598. lines.astype(np.int32),
  599. False,
  600. drop_color,
  601. drop_width,
  602. lineType=cv2.LINE_4,
  603. )
  604. if blur_value > 1:
  605. cv2.blur(rain_layer, (blur_value, blur_value), dst=rain_layer)
  606. cv2.add(img, rain_layer, dst=img)
  607. if brightness_coefficient != 1.0:
  608. cv2.multiply(img, brightness_coefficient, dst=img, dtype=cv2.CV_8U)
  609. return img
  610. def get_fog_particle_radiuses(
  611. img_shape: tuple[int, int],
  612. num_particles: int,
  613. fog_intensity: float,
  614. random_generator: np.random.Generator,
  615. ) -> list[int]:
  616. """Generate radiuses for fog particles.
  617. Args:
  618. img_shape (tuple[int, int]): Image shape.
  619. num_particles (int): Number of fog particles.
  620. fog_intensity (float): Intensity of the fog effect, between 0 and 1.
  621. random_generator (np.random.Generator): Random generator to use.
  622. Returns:
  623. list[int]: List of radiuses for each fog particle.
  624. """
  625. height, width = img_shape[:2]
  626. max_fog_radius = max(2, int(min(height, width) * 0.1 * fog_intensity))
  627. min_radius = max(1, max_fog_radius // 2)
  628. return [random_generator.integers(min_radius, max_fog_radius) for _ in range(num_particles)]
  629. @uint8_io
  630. @clipped
  631. @preserve_channel_dim
  632. def add_fog(
  633. img: np.ndarray,
  634. fog_intensity: float,
  635. alpha_coef: float,
  636. fog_particle_positions: list[tuple[int, int]],
  637. fog_particle_radiuses: list[int],
  638. ) -> np.ndarray:
  639. """Add fog to an image.
  640. This function adds fog to an image by drawing fog particles on the image.
  641. The fog particles are drawn using the OpenCV function cv2.circle.
  642. Args:
  643. img (np.ndarray): The image to add fog to.
  644. fog_intensity (float): The intensity of the fog effect, between 0 and 1.
  645. alpha_coef (float): The coefficient for the alpha blending.
  646. fog_particle_positions (list[tuple[int, int]]): The positions of the fog particles.
  647. fog_particle_radiuses (list[int]): The radiuses of the fog particles.
  648. Returns:
  649. np.ndarray: The image with fog added.
  650. """
  651. result = img.copy()
  652. # Apply fog particles progressively like in old version
  653. for (x, y), radius in zip(fog_particle_positions, fog_particle_radiuses):
  654. overlay = result.copy()
  655. cv2.circle(
  656. overlay,
  657. center=(x, y),
  658. radius=radius,
  659. color=(255, 255, 255),
  660. thickness=-1,
  661. )
  662. # Progressive blending
  663. alpha = alpha_coef * fog_intensity
  664. cv2.addWeighted(overlay, alpha, result, 1 - alpha, 0, dst=result)
  665. # Final subtle blur
  666. blur_size = max(3, int(min(img.shape[:2]) // 30))
  667. if blur_size % 2 == 0:
  668. blur_size += 1
  669. result = cv2.GaussianBlur(result, (blur_size, blur_size), 0)
  670. return clip(result, np.uint8, inplace=True)
  671. @uint8_io
  672. @preserve_channel_dim
  673. @maybe_process_in_chunks
  674. def add_sun_flare_overlay(
  675. img: np.ndarray,
  676. flare_center: tuple[float, float],
  677. src_radius: int,
  678. src_color: tuple[int, ...],
  679. circles: list[Any],
  680. ) -> np.ndarray:
  681. """Add a sun flare effect to an image using a simple overlay technique.
  682. This function creates a basic sun flare effect by overlaying multiple semi-transparent
  683. circles of varying sizes and intensities on the input image. The effect simulates
  684. a simple lens flare caused by bright light sources.
  685. Args:
  686. img (np.ndarray): The input image.
  687. flare_center (tuple[float, float]): (x, y) coordinates of the flare center
  688. in pixel coordinates.
  689. src_radius (int): The radius of the main sun circle in pixels.
  690. src_color (tuple[int, ...]): The color of the sun, represented as a tuple of RGB values.
  691. circles (list[Any]): A list of tuples, each representing a circle that contributes
  692. to the flare effect. Each tuple contains:
  693. - alpha (float): The transparency of the circle (0.0 to 1.0).
  694. - center (tuple[int, int]): (x, y) coordinates of the circle center.
  695. - radius (int): The radius of the circle.
  696. - color (tuple[int, int, int]): RGB color of the circle.
  697. Returns:
  698. np.ndarray: The output image with the sun flare effect added.
  699. Note:
  700. - This function uses a simple alpha blending technique to overlay flare elements.
  701. - The main sun is created as a gradient circle, fading from the center outwards.
  702. - Additional flare circles are added along an imaginary line from the sun's position.
  703. - This method is computationally efficient but may produce less realistic results
  704. compared to more advanced techniques.
  705. The flare effect is created through the following steps:
  706. 1. Create an overlay image and output image as copies of the input.
  707. 2. Add smaller flare circles to the overlay.
  708. 3. Blend the overlay with the output image using alpha compositing.
  709. 4. Add the main sun circle with a radial gradient.
  710. Examples:
  711. >>> import numpy as np
  712. >>> import albumentations as A
  713. >>> image = np.random.randint(0, 256, [100, 100, 3], dtype=np.uint8)
  714. >>> flare_center = (50, 50)
  715. >>> src_radius = 20
  716. >>> src_color = (255, 255, 200)
  717. >>> circles = [
  718. ... (0.1, (60, 60), 5, (255, 200, 200)),
  719. ... (0.2, (70, 70), 3, (200, 255, 200))
  720. ... ]
  721. >>> flared_image = A.functional.add_sun_flare_overlay(
  722. ... image, flare_center, src_radius, src_color, circles
  723. ... )
  724. References:
  725. - Alpha compositing: https://en.wikipedia.org/wiki/Alpha_compositing
  726. - Lens flare: https://en.wikipedia.org/wiki/Lens_flare
  727. """
  728. overlay = img.copy()
  729. output = img.copy()
  730. weighted_brightness = 0.0
  731. total_radius_length = 0.0
  732. for alpha, (x, y), rad3, circle_color in circles:
  733. weighted_brightness += alpha * rad3
  734. total_radius_length += rad3
  735. cv2.circle(overlay, (x, y), rad3, circle_color, -1)
  736. output = add_weighted(overlay, alpha, output, 1 - alpha)
  737. point = [int(x) for x in flare_center]
  738. overlay = output.copy()
  739. num_times = src_radius // 10
  740. # max_alpha is calculated using weighted_brightness and total_radii_length times 5
  741. # meaning the higher the alpha with larger area, the brighter the bright spot will be
  742. # for list of alphas in range [0.05, 0.2], the max_alpha should below 1
  743. max_alpha = weighted_brightness / total_radius_length * 5
  744. alpha = np.linspace(0.0, min(max_alpha, 1.0), num=num_times)
  745. rad = np.linspace(1, src_radius, num=num_times)
  746. for i in range(num_times):
  747. cv2.circle(overlay, point, int(rad[i]), src_color, -1)
  748. alp = alpha[num_times - i - 1] * alpha[num_times - i - 1] * alpha[num_times - i - 1]
  749. output = add_weighted(overlay, alp, output, 1 - alp)
  750. return output
  751. @uint8_io
  752. @clipped
  753. def add_sun_flare_physics_based(
  754. img: np.ndarray,
  755. flare_center: tuple[int, int],
  756. src_radius: int,
  757. src_color: tuple[int, int, int],
  758. circles: list[Any],
  759. ) -> np.ndarray:
  760. """Add a more realistic sun flare effect to the image.
  761. This function creates a complex sun flare effect by simulating various optical phenomena
  762. that occur in real camera lenses when capturing bright light sources. The result is a
  763. more realistic and physically plausible lens flare effect.
  764. Args:
  765. img (np.ndarray): Input image.
  766. flare_center (tuple[int, int]): (x, y) coordinates of the sun's center in pixels.
  767. src_radius (int): Radius of the main sun circle in pixels.
  768. src_color (tuple[int, int, int]): Color of the sun in RGB format.
  769. circles (list[Any]): List of tuples, each representing a flare circle with parameters:
  770. (alpha, center, size, color)
  771. - alpha (float): Transparency of the circle (0.0 to 1.0).
  772. - center (tuple[int, int]): (x, y) coordinates of the circle center.
  773. - size (float): Size factor for the circle radius.
  774. - color (tuple[int, int, int]): RGB color of the circle.
  775. Returns:
  776. np.ndarray: Image with added sun flare effect.
  777. Note:
  778. This function implements several techniques to create a more realistic flare:
  779. 1. Separate flare layer: Allows for complex manipulations of the flare effect.
  780. 2. Lens diffraction spikes: Simulates light diffraction in camera aperture.
  781. 3. Radial gradient mask: Creates natural fading of the flare from the center.
  782. 4. Gaussian blur: Softens the flare for a more natural glow effect.
  783. 5. Chromatic aberration: Simulates color fringing often seen in real lens flares.
  784. 6. Screen blending: Provides a more realistic blending of the flare with the image.
  785. The flare effect is created through the following steps:
  786. 1. Create a separate flare layer.
  787. 2. Add the main sun circle and diffraction spikes to the flare layer.
  788. 3. Add additional flare circles based on the input parameters.
  789. 4. Apply Gaussian blur to soften the flare.
  790. 5. Create and apply a radial gradient mask for natural fading.
  791. 6. Simulate chromatic aberration by applying different blurs to color channels.
  792. 7. Blend the flare with the original image using screen blending mode.
  793. Examples:
  794. >>> import numpy as np
  795. >>> import albumentations as A
  796. >>> image = np.random.randint(0, 256, [1000, 1000, 3], dtype=np.uint8)
  797. >>> flare_center = (500, 500)
  798. >>> src_radius = 50
  799. >>> src_color = (255, 255, 200)
  800. >>> circles = [
  801. ... (0.1, (550, 550), 10, (255, 200, 200)),
  802. ... (0.2, (600, 600), 5, (200, 255, 200))
  803. ... ]
  804. >>> flared_image = A.functional.add_sun_flare_physics_based(
  805. ... image, flare_center, src_radius, src_color, circles
  806. ... )
  807. References:
  808. - Lens flare: https://en.wikipedia.org/wiki/Lens_flare
  809. - Diffraction: https://en.wikipedia.org/wiki/Diffraction
  810. - Chromatic aberration: https://en.wikipedia.org/wiki/Chromatic_aberration
  811. - Screen blending: https://en.wikipedia.org/wiki/Blend_modes#Screen
  812. """
  813. output = img.copy()
  814. height, width = img.shape[:2]
  815. # Create a separate flare layer
  816. flare_layer = np.zeros_like(img, dtype=np.float32)
  817. # Add the main sun
  818. cv2.circle(flare_layer, flare_center, src_radius, src_color, -1)
  819. # Add lens diffraction spikes
  820. for angle in [0, 45, 90, 135]:
  821. end_point = (
  822. int(flare_center[0] + np.cos(np.radians(angle)) * max(width, height)),
  823. int(flare_center[1] + np.sin(np.radians(angle)) * max(width, height)),
  824. )
  825. cv2.line(flare_layer, flare_center, end_point, src_color, 2)
  826. # Add flare circles
  827. for _, center, size, color in circles:
  828. cv2.circle(flare_layer, center, int(size**0.33), color, -1)
  829. # Apply gaussian blur to soften the flare
  830. flare_layer = cv2.GaussianBlur(flare_layer, (0, 0), sigmaX=15, sigmaY=15)
  831. # Create a radial gradient mask
  832. y, x = np.ogrid[:height, :width]
  833. mask = np.sqrt((x - flare_center[0]) ** 2 + (y - flare_center[1]) ** 2)
  834. mask = 1 - np.clip(mask / (max(width, height) * 0.7), 0, 1)
  835. mask = np.dstack([mask] * 3)
  836. # Apply the mask to the flare layer
  837. flare_layer *= mask
  838. # Add chromatic aberration
  839. channels = list(cv2.split(flare_layer))
  840. channels[0] = cv2.GaussianBlur(
  841. channels[0],
  842. (0, 0),
  843. sigmaX=3,
  844. sigmaY=3,
  845. ) # Blue channel
  846. channels[2] = cv2.GaussianBlur(
  847. channels[2],
  848. (0, 0),
  849. sigmaX=5,
  850. sigmaY=5,
  851. ) # Red channel
  852. flare_layer = cv2.merge(channels)
  853. # Blend the flare with the original image using screen blending
  854. return 255 - ((255 - output) * (255 - flare_layer) / 255)
  855. @uint8_io
  856. @preserve_channel_dim
  857. def add_shadow(
  858. img: np.ndarray,
  859. vertices_list: list[np.ndarray],
  860. intensities: np.ndarray,
  861. ) -> np.ndarray:
  862. """Add shadows to the image by reducing the intensity of the pixel values in specified regions.
  863. Args:
  864. img (np.ndarray): Input image. Multichannel images are supported.
  865. vertices_list (list[np.ndarray]): List of vertices for shadow polygons.
  866. intensities (np.ndarray): Array of shadow intensities. Range is [0, 1].
  867. Returns:
  868. np.ndarray: Image with shadows added.
  869. References:
  870. Automold--Road-Augmentation-Library: https://github.com/UjjwalSaxena/Automold--Road-Augmentation-Library
  871. """
  872. num_channels = get_num_channels(img)
  873. max_value = MAX_VALUES_BY_DTYPE[np.uint8]
  874. img_shadowed = img.copy()
  875. # Iterate over the vertices and intensity list
  876. for vertices, shadow_intensity in zip(vertices_list, intensities):
  877. # Create mask for the current shadow polygon
  878. mask = np.zeros((img.shape[0], img.shape[1], 1), dtype=np.uint8)
  879. cv2.fillPoly(mask, [vertices], (max_value,))
  880. # Duplicate the mask to have the same number of channels as the image
  881. mask = np.repeat(mask, num_channels, axis=2)
  882. # Apply shadow to the channels directly
  883. # It could be tempting to convert to HLS and apply the shadow to the L channel, but it creates artifacts
  884. shadowed_indices = mask[:, :, 0] == max_value
  885. darkness = 1 - shadow_intensity
  886. img_shadowed[shadowed_indices] = clip(
  887. img_shadowed[shadowed_indices] * darkness,
  888. np.uint8,
  889. inplace=True,
  890. )
  891. return img_shadowed
  892. @uint8_io
  893. @clipped
  894. @preserve_channel_dim
  895. def add_gravel(img: np.ndarray, gravels: list[Any]) -> np.ndarray:
  896. """Add gravel to an image.
  897. This function adds gravel to an image by drawing gravel particles on the image.
  898. The gravel particles are drawn using the OpenCV function cv2.circle.
  899. Args:
  900. img (np.ndarray): The image to add gravel to.
  901. gravels (list[Any]): The gravel particles to draw on the image.
  902. Returns:
  903. np.ndarray: The image with gravel added.
  904. """
  905. non_rgb_error(img)
  906. image_hls = cv2.cvtColor(img, cv2.COLOR_RGB2HLS)
  907. for gravel in gravels:
  908. min_y, max_y, min_x, max_x, sat = gravel
  909. image_hls[min_y:max_y, min_x:max_x, 1] = sat
  910. return cv2.cvtColor(image_hls, cv2.COLOR_HLS2RGB)
  911. def invert(img: np.ndarray) -> np.ndarray:
  912. """Invert the colors of an image.
  913. This function inverts the colors of an image by subtracting each pixel value from the maximum possible value.
  914. The result is a negative of the original image.
  915. Args:
  916. img (np.ndarray): The image to invert.
  917. Returns:
  918. np.ndarray: The inverted image.
  919. """
  920. # Supports all the valid dtypes
  921. # clips the img to avoid unexpected behaviour.
  922. return MAX_VALUES_BY_DTYPE[img.dtype] - img
  923. def channel_shuffle(img: np.ndarray, channels_shuffled: list[int]) -> np.ndarray:
  924. """Shuffle the channels of an image.
  925. This function shuffles the channels of an image by using the cv2.mixChannels function.
  926. The channels are shuffled according to the channels_shuffled array.
  927. Args:
  928. img (np.ndarray): The image to shuffle.
  929. channels_shuffled (np.ndarray): The array of channels to shuffle.
  930. Returns:
  931. np.ndarray: The shuffled image.
  932. """
  933. output = np.empty_like(img)
  934. from_to = []
  935. for i, j in enumerate(channels_shuffled):
  936. from_to.extend([j, i]) # Use [src, dst]
  937. cv2.mixChannels([img], [output], from_to)
  938. return output
  939. def volume_channel_shuffle(volume: np.ndarray, channels_shuffled: Sequence[int]) -> np.ndarray:
  940. """Shuffle channels of a single volume (D, H, W, C) or (D, H, W).
  941. Args:
  942. volume (np.ndarray): Input volume.
  943. channels_shuffled (Sequence[int]): New channel order.
  944. Returns:
  945. np.ndarray: Volume with channels shuffled.
  946. """
  947. return volume.copy()[..., channels_shuffled] if volume.ndim == 4 else volume
  948. def volumes_channel_shuffle(volumes: np.ndarray, channels_shuffled: Sequence[int]) -> np.ndarray:
  949. """Shuffle channels of a batch of volumes (B, D, H, W, C) or (B, D, H, W).
  950. Args:
  951. volumes (np.ndarray): Input batch of volumes.
  952. channels_shuffled (Sequence[int]): New channel order.
  953. Returns:
  954. np.ndarray: Batch of volumes with channels shuffled.
  955. """
  956. return volumes.copy()[..., channels_shuffled] if volumes.ndim == 5 else volumes
  957. def gamma_transform(img: np.ndarray, gamma: float) -> np.ndarray:
  958. """Apply gamma transformation to an image.
  959. This function applies gamma transformation to an image by raising each pixel value to the power of gamma.
  960. The result is a non-linear transformation that can enhance or reduce the contrast of the image.
  961. Args:
  962. img (np.ndarray): The image to apply gamma transformation to.
  963. gamma (float): The gamma value to apply.
  964. Returns:
  965. np.ndarray: The gamma transformed image.
  966. """
  967. if img.dtype == np.uint8:
  968. table = (np.arange(0, 256.0 / 255, 1.0 / 255) ** gamma) * 255
  969. return sz_lut(img, table.astype(np.uint8), inplace=False)
  970. return np.power(img, gamma)
  971. @float32_io
  972. @clipped
  973. def iso_noise(
  974. image: np.ndarray,
  975. color_shift: float,
  976. intensity: float,
  977. random_generator: np.random.Generator,
  978. ) -> np.ndarray:
  979. """Apply poisson noise to an image to simulate camera sensor noise.
  980. Args:
  981. image (np.ndarray): Input image. Currently, only RGB images are supported.
  982. color_shift (float): The amount of color shift to apply.
  983. intensity (float): Multiplication factor for noise values. Values of ~0.5 produce a noticeable,
  984. yet acceptable level of noise.
  985. random_generator (np.random.Generator): If specified, this will be random generator used
  986. for noise generation.
  987. Returns:
  988. np.ndarray: The noised image.
  989. Image types:
  990. uint8, float32
  991. Number of channels:
  992. 3
  993. """
  994. hls = cv2.cvtColor(image, cv2.COLOR_RGB2HLS)
  995. _, stddev = cv2.meanStdDev(hls)
  996. luminance_noise = random_generator.poisson(
  997. stddev[1] * intensity,
  998. size=hls.shape[:2],
  999. )
  1000. color_noise = random_generator.normal(
  1001. 0,
  1002. color_shift * intensity,
  1003. size=hls.shape[:2],
  1004. )
  1005. hls[..., 0] += color_noise
  1006. hls[..., 1] = add_array(
  1007. hls[..., 1],
  1008. luminance_noise * intensity * (1.0 - hls[..., 1]),
  1009. )
  1010. noised_hls = cv2.cvtColor(hls, cv2.COLOR_HLS2RGB)
  1011. return np.clip(noised_hls, 0, 1, out=noised_hls) # Ensure output is in [0, 1] range
  1012. def to_gray_weighted_average(img: np.ndarray) -> np.ndarray:
  1013. """Convert an RGB image to grayscale using the weighted average method.
  1014. This function uses OpenCV's cvtColor function with COLOR_RGB2GRAY conversion,
  1015. which applies the following formula:
  1016. Y = 0.299*R + 0.587*G + 0.114*B
  1017. Args:
  1018. img (np.ndarray): Input RGB image as a numpy array.
  1019. Returns:
  1020. np.ndarray: Grayscale image as a 2D numpy array.
  1021. Image types:
  1022. uint8, float32
  1023. Number of channels:
  1024. 3
  1025. """
  1026. return cv2.cvtColor(img, cv2.COLOR_RGB2GRAY)
  1027. @uint8_io
  1028. @clipped
  1029. def to_gray_from_lab(img: np.ndarray) -> np.ndarray:
  1030. """Convert an RGB image to grayscale using the L channel from the LAB color space.
  1031. This function converts the RGB image to the LAB color space and extracts the L channel.
  1032. The LAB color space is designed to approximate human vision, where L represents lightness.
  1033. Key aspects of this method:
  1034. 1. The L channel represents the lightness of each pixel, ranging from 0 (black) to 100 (white).
  1035. 2. It's more perceptually uniform than RGB, meaning equal changes in L values correspond to
  1036. roughly equal changes in perceived lightness.
  1037. 3. The L channel is independent of the color information (A and B channels), making it
  1038. suitable for grayscale conversion.
  1039. This method can be particularly useful when you want a grayscale image that closely
  1040. matches human perception of lightness, potentially preserving more perceived contrast
  1041. than simple RGB-based methods.
  1042. Args:
  1043. img (np.ndarray): Input RGB image as a numpy array.
  1044. Returns:
  1045. np.ndarray: Grayscale image as a 2D numpy array, representing the L (lightness) channel.
  1046. Values are scaled to match the input image's data type range.
  1047. Image types:
  1048. uint8, float32
  1049. Number of channels:
  1050. 3
  1051. """
  1052. return cv2.cvtColor(img, cv2.COLOR_RGB2LAB)[..., 0]
  1053. @clipped
  1054. def to_gray_desaturation(img: np.ndarray) -> np.ndarray:
  1055. """Convert an image to grayscale using the desaturation method.
  1056. Args:
  1057. img (np.ndarray): Input image as a numpy array.
  1058. Returns:
  1059. np.ndarray: Grayscale image as a 2D numpy array.
  1060. Image types:
  1061. uint8, float32
  1062. Number of channels:
  1063. any
  1064. """
  1065. float_image = img.astype(np.float32)
  1066. return (np.max(float_image, axis=-1) + np.min(float_image, axis=-1)) / 2
  1067. def to_gray_average(img: np.ndarray) -> np.ndarray:
  1068. """Convert an image to grayscale using the average method.
  1069. This function computes the arithmetic mean across all channels for each pixel,
  1070. resulting in a grayscale representation of the image.
  1071. Key aspects of this method:
  1072. 1. It treats all channels equally, regardless of their perceptual importance.
  1073. 2. Works with any number of channels, making it versatile for various image types.
  1074. 3. Simple and fast to compute, but may not accurately represent perceived brightness.
  1075. 4. For RGB images, the formula is: Gray = (R + G + B) / 3
  1076. Note: This method may produce different results compared to weighted methods
  1077. (like RGB weighted average) which account for human perception of color brightness.
  1078. It may also produce unexpected results for images with alpha channels or
  1079. non-color data in additional channels.
  1080. Args:
  1081. img (np.ndarray): Input image as a numpy array. Can be any number of channels.
  1082. Returns:
  1083. np.ndarray: Grayscale image as a 2D numpy array. The output data type
  1084. matches the input data type.
  1085. Image types:
  1086. uint8, float32
  1087. Number of channels:
  1088. any
  1089. """
  1090. return np.mean(img, axis=-1).astype(img.dtype)
  1091. def to_gray_max(img: np.ndarray) -> np.ndarray:
  1092. """Convert an image to grayscale using the maximum channel value method.
  1093. This function takes the maximum value across all channels for each pixel,
  1094. resulting in a grayscale image that preserves the brightest parts of the original image.
  1095. Key aspects of this method:
  1096. 1. Works with any number of channels, making it versatile for various image types.
  1097. 2. For 3-channel (e.g., RGB) images, this method is equivalent to extracting the V (Value)
  1098. channel from the HSV color space.
  1099. 3. Preserves the brightest parts of the image but may lose some color contrast information.
  1100. 4. Simple and fast to compute.
  1101. Note:
  1102. - This method tends to produce brighter grayscale images compared to other conversion methods,
  1103. as it always selects the highest intensity value from the channels.
  1104. - For RGB images, it may not accurately represent perceived brightness as it doesn't
  1105. account for human color perception.
  1106. Args:
  1107. img (np.ndarray): Input image as a numpy array. Can be any number of channels.
  1108. Returns:
  1109. np.ndarray: Grayscale image as a 2D numpy array. The output data type
  1110. matches the input data type.
  1111. Image types:
  1112. uint8, float32
  1113. Number of channels:
  1114. any
  1115. """
  1116. return np.max(img, axis=-1)
  1117. @clipped
  1118. def to_gray_pca(img: np.ndarray) -> np.ndarray:
  1119. """Convert an image to grayscale using Principal Component Analysis (PCA).
  1120. This function applies PCA to reduce a multi-channel image to a single channel,
  1121. effectively creating a grayscale representation that captures the maximum variance
  1122. in the color data.
  1123. Args:
  1124. img (np.ndarray): Input image as a numpy array with shape (height, width, channels).
  1125. Returns:
  1126. np.ndarray: Grayscale image as a 2D numpy array with shape (height, width).
  1127. If input is uint8, output is uint8 in range [0, 255].
  1128. If input is float32, output is float32 in range [0, 1].
  1129. Note:
  1130. This method can potentially preserve more information from the original image
  1131. compared to standard weighted average methods, as it accounts for the
  1132. correlations between color channels.
  1133. Image types:
  1134. uint8, float32
  1135. Number of channels:
  1136. any
  1137. """
  1138. dtype = img.dtype
  1139. # Reshape the image to a 2D array of pixels
  1140. pixels = img.reshape(-1, img.shape[2])
  1141. # Perform PCA
  1142. pca = PCA(n_components=1)
  1143. pca_result = pca.fit_transform(pixels)
  1144. # Reshape back to image dimensions and scale to 0-255
  1145. grayscale = pca_result.reshape(img.shape[:2])
  1146. grayscale = normalize_per_image(grayscale, "min_max")
  1147. return from_float(grayscale, target_dtype=dtype) if dtype == np.uint8 else grayscale
  1148. def to_gray(
  1149. img: np.ndarray,
  1150. num_output_channels: int,
  1151. method: Literal[
  1152. "weighted_average",
  1153. "from_lab",
  1154. "desaturation",
  1155. "average",
  1156. "max",
  1157. "pca",
  1158. ],
  1159. ) -> np.ndarray:
  1160. """Convert an image to grayscale using a specified method.
  1161. This function converts an image to grayscale using a specified method.
  1162. The method can be one of the following:
  1163. - "weighted_average": Use the weighted average method.
  1164. - "from_lab": Use the L channel from the LAB color space.
  1165. - "desaturation": Use the desaturation method.
  1166. - "average": Use the average method.
  1167. - "max": Use the maximum channel value method.
  1168. - "pca": Use the Principal Component Analysis method.
  1169. Args:
  1170. img (np.ndarray): Input image as a numpy array.
  1171. num_output_channels (int): The number of channels in the output image.
  1172. method (Literal["weighted_average", "from_lab", "desaturation", "average", "max", "pca"]):
  1173. The method to use for grayscale conversion.
  1174. Returns:
  1175. np.ndarray: Grayscale image as a 2D numpy array.
  1176. """
  1177. if method == "weighted_average":
  1178. result = to_gray_weighted_average(img)
  1179. elif method == "from_lab":
  1180. result = to_gray_from_lab(img)
  1181. elif method == "desaturation":
  1182. result = to_gray_desaturation(img)
  1183. elif method == "average":
  1184. result = to_gray_average(img)
  1185. elif method == "max":
  1186. result = to_gray_max(img)
  1187. elif method == "pca":
  1188. result = to_gray_pca(img)
  1189. else:
  1190. raise ValueError(f"Unsupported method: {method}")
  1191. return grayscale_to_multichannel(result, num_output_channels)
  1192. def grayscale_to_multichannel(
  1193. grayscale_image: np.ndarray,
  1194. num_output_channels: int = 3,
  1195. ) -> np.ndarray:
  1196. """Convert a grayscale image to a multi-channel image.
  1197. This function takes a 2D grayscale image or a 3D image with a single channel
  1198. and converts it to a multi-channel image by repeating the grayscale data
  1199. across the specified number of channels.
  1200. Args:
  1201. grayscale_image (np.ndarray): Input grayscale image. Can be 2D (height, width)
  1202. or 3D (height, width, 1).
  1203. num_output_channels (int, optional): Number of channels in the output image. Defaults to 3.
  1204. Returns:
  1205. np.ndarray: Multi-channel image with shape (height, width, num_channels)
  1206. """
  1207. # If output should be single channel, just squeeze and return
  1208. if num_output_channels == 1:
  1209. return grayscale_image
  1210. # For multi-channel output, squeeze and stack
  1211. squeezed = np.squeeze(grayscale_image)
  1212. return cv2.merge([squeezed] * num_output_channels)
  1213. @preserve_channel_dim
  1214. @uint8_io
  1215. def downscale(
  1216. img: np.ndarray,
  1217. scale: float,
  1218. down_interpolation: int,
  1219. up_interpolation: int,
  1220. ) -> np.ndarray:
  1221. """Downscale and upscale an image.
  1222. This function downscales and upscales an image using the specified interpolation methods.
  1223. The downscaling and upscaling are performed using the cv2.resize function.
  1224. Args:
  1225. img (np.ndarray): Input image as a numpy array.
  1226. scale (float): The scale factor for the downscaling and upscaling.
  1227. down_interpolation (int): The interpolation method for the downscaling.
  1228. up_interpolation (int): The interpolation method for the upscaling.
  1229. Returns:
  1230. np.ndarray: The downscaled and upscaled image.
  1231. """
  1232. height, width = img.shape[:2]
  1233. downscaled = cv2.resize(
  1234. img,
  1235. None,
  1236. fx=scale,
  1237. fy=scale,
  1238. interpolation=down_interpolation,
  1239. )
  1240. return cv2.resize(downscaled, (width, height), interpolation=up_interpolation)
  1241. def noop(input_obj: Any, **params: Any) -> Any:
  1242. """No-op function.
  1243. This function is a no-op and returns the input object unchanged.
  1244. It is used to satisfy the type checker requirements for the `noop` function.
  1245. Args:
  1246. input_obj (Any): The input object to return unchanged.
  1247. **params (Any): Additional keyword arguments.
  1248. Returns:
  1249. Any: The input object unchanged.
  1250. """
  1251. return input_obj
  1252. @float32_io
  1253. @clipped
  1254. @preserve_channel_dim
  1255. def fancy_pca(img: np.ndarray, alpha_vector: np.ndarray) -> np.ndarray:
  1256. """Perform 'Fancy PCA' augmentation on an image with any number of channels.
  1257. Args:
  1258. img (np.ndarray): Input image
  1259. alpha_vector (np.ndarray): Vector of scale factors for each principal component.
  1260. Should have the same length as the number of channels in the image.
  1261. Returns:
  1262. np.ndarray: Augmented image of the same shape, type, and range as the input.
  1263. Image types:
  1264. uint8, float32
  1265. Number of channels:
  1266. Any
  1267. Note:
  1268. - This function generalizes the Fancy PCA augmentation to work with any number of channels.
  1269. - It preserves the original range of the image ([0, 255] for uint8, [0, 1] for float32).
  1270. - For single-channel images, the augmentation is applied as a simple scaling of pixel intensity variation.
  1271. - For multi-channel images, PCA is performed on the entire image, treating each pixel
  1272. as a point in N-dimensional space (where N is the number of channels).
  1273. - The augmentation preserves the correlation between channels while adding controlled noise.
  1274. - Computation time may increase significantly for images with a large number of channels.
  1275. References:
  1276. ImageNet classification with deep convolutional neural networks: Krizhevsky, A., Sutskever, I.,
  1277. & Hinton, G. E. (2012): In Advances in neural information processing systems (pp. 1097-1105).
  1278. """
  1279. orig_shape = img.shape
  1280. num_channels = get_num_channels(img)
  1281. # Reshape image to 2D array of pixels
  1282. img_reshaped = img.reshape(-1, num_channels)
  1283. # Center the pixel values
  1284. img_mean = np.mean(img_reshaped, axis=0)
  1285. img_centered = img_reshaped - img_mean
  1286. if num_channels == 1:
  1287. # For grayscale images, apply a simple scaling
  1288. std_dev = np.std(img_centered)
  1289. noise = alpha_vector[0] * std_dev * img_centered
  1290. else:
  1291. # Compute covariance matrix
  1292. img_cov = np.cov(img_centered, rowvar=False)
  1293. # Compute eigenvectors & eigenvalues of the covariance matrix
  1294. eig_vals, eig_vecs = np.linalg.eigh(img_cov)
  1295. # Sort eigenvectors by eigenvalues in descending order
  1296. sort_perm = eig_vals[::-1].argsort()
  1297. eig_vals = eig_vals[sort_perm]
  1298. eig_vecs = eig_vecs[:, sort_perm]
  1299. # Create noise vector
  1300. noise = np.dot(
  1301. np.dot(eig_vecs, np.diag(alpha_vector * eig_vals)),
  1302. img_centered.T,
  1303. ).T
  1304. # Add noise to the image
  1305. img_pca = img_reshaped + noise
  1306. # Reshape back to original shape
  1307. img_pca = img_pca.reshape(orig_shape)
  1308. # Clip values to [0, 1] range
  1309. return np.clip(img_pca, 0, 1, out=img_pca)
  1310. @preserve_channel_dim
  1311. def adjust_brightness_torchvision(img: np.ndarray, factor: np.ndarray) -> np.ndarray:
  1312. """Adjust the brightness of an image.
  1313. This function adjusts the brightness of an image by multiplying each pixel value by a factor.
  1314. The brightness is adjusted by multiplying the image by the factor.
  1315. Args:
  1316. img (np.ndarray): Input image as a numpy array.
  1317. factor (np.ndarray): The factor to adjust the brightness by.
  1318. Returns:
  1319. np.ndarray: The adjusted image.
  1320. """
  1321. if factor == 0:
  1322. return np.zeros_like(img)
  1323. if factor == 1:
  1324. return img
  1325. return multiply(img, factor, inplace=False)
  1326. @preserve_channel_dim
  1327. def adjust_contrast_torchvision(img: np.ndarray, factor: float) -> np.ndarray:
  1328. """Adjust the contrast of an image.
  1329. This function adjusts the contrast of an image by multiplying each pixel value by a factor.
  1330. The contrast is adjusted by multiplying the image by the factor.
  1331. Args:
  1332. img (np.ndarray): Input image as a numpy array.
  1333. factor (float): The factor to adjust the contrast by.
  1334. Returns:
  1335. np.ndarray: The adjusted image.
  1336. """
  1337. if factor == 1:
  1338. return img
  1339. mean = img.mean() if is_grayscale_image(img) else cv2.cvtColor(img, cv2.COLOR_RGB2GRAY).mean()
  1340. if factor == 0:
  1341. if img.dtype != np.float32:
  1342. mean = int(mean + 0.5)
  1343. return np.full_like(img, mean, dtype=img.dtype)
  1344. return multiply_add(img, factor, mean * (1 - factor), inplace=False)
  1345. @clipped
  1346. @preserve_channel_dim
  1347. def adjust_saturation_torchvision(
  1348. img: np.ndarray,
  1349. factor: float,
  1350. gamma: float = 0,
  1351. ) -> np.ndarray:
  1352. """Adjust the saturation of an image.
  1353. This function adjusts the saturation of an image by multiplying each pixel value by a factor.
  1354. The saturation is adjusted by multiplying the image by the factor.
  1355. Args:
  1356. img (np.ndarray): Input image as a numpy array.
  1357. factor (float): The factor to adjust the saturation by.
  1358. gamma (float): The gamma value to use for the adjustment.
  1359. Returns:
  1360. np.ndarray: The adjusted image.
  1361. """
  1362. if factor == 1 or is_grayscale_image(img):
  1363. return img
  1364. gray = cv2.cvtColor(img, cv2.COLOR_RGB2GRAY)
  1365. gray = cv2.cvtColor(gray, cv2.COLOR_GRAY2RGB)
  1366. return gray if factor == 0 else cv2.addWeighted(img, factor, gray, 1 - factor, gamma=gamma)
  1367. def _adjust_hue_torchvision_uint8(img: np.ndarray, factor: float) -> np.ndarray:
  1368. img = cv2.cvtColor(img, cv2.COLOR_RGB2HSV)
  1369. lut = np.arange(0, 256, dtype=np.int16)
  1370. lut = np.mod(lut + 180 * factor, 180).astype(np.uint8)
  1371. img[..., 0] = sz_lut(img[..., 0], lut, inplace=False)
  1372. return cv2.cvtColor(img, cv2.COLOR_HSV2RGB)
  1373. def adjust_hue_torchvision(img: np.ndarray, factor: float) -> np.ndarray:
  1374. """Adjust the hue of an image.
  1375. This function adjusts the hue of an image by adding a factor to the hue value.
  1376. Args:
  1377. img (np.ndarray): Input image.
  1378. factor (float): The factor to adjust the hue by.
  1379. Returns:
  1380. np.ndarray: The adjusted image.
  1381. """
  1382. if is_grayscale_image(img) or factor == 0:
  1383. return img
  1384. if img.dtype == np.uint8:
  1385. return _adjust_hue_torchvision_uint8(img, factor)
  1386. img = cv2.cvtColor(img, cv2.COLOR_RGB2HSV)
  1387. img[..., 0] = np.mod(img[..., 0] + factor * 360, 360)
  1388. return cv2.cvtColor(img, cv2.COLOR_HSV2RGB)
  1389. @uint8_io
  1390. @preserve_channel_dim
  1391. def superpixels(
  1392. image: np.ndarray,
  1393. n_segments: int,
  1394. replace_samples: Sequence[bool],
  1395. max_size: int | None,
  1396. interpolation: int,
  1397. ) -> np.ndarray:
  1398. """Apply superpixels to an image.
  1399. This function applies superpixels to an image using the SLIC algorithm.
  1400. The superpixels are applied by replacing the pixels in the image with the mean intensity of the superpixel.
  1401. Args:
  1402. image (np.ndarray): Input image as a numpy array.
  1403. n_segments (int): The number of segments to use for the superpixels.
  1404. replace_samples (Sequence[bool]): The samples to replace.
  1405. max_size (int | None): The maximum size of the superpixels.
  1406. interpolation (int): The interpolation method to use.
  1407. Returns:
  1408. np.ndarray: The superpixels applied to the image.
  1409. """
  1410. if not np.any(replace_samples):
  1411. return image
  1412. orig_shape = image.shape
  1413. if max_size is not None:
  1414. size = max(image.shape[:2])
  1415. if size > max_size:
  1416. scale = max_size / size
  1417. height, width = image.shape[:2]
  1418. new_height, new_width = int(height * scale), int(width * scale)
  1419. image = fgeometric.resize(image, (new_height, new_width), interpolation)
  1420. segments = slic(
  1421. image,
  1422. n_segments=n_segments,
  1423. compactness=10,
  1424. )
  1425. min_value = 0
  1426. max_value = MAX_VALUES_BY_DTYPE[image.dtype]
  1427. image = np.copy(image)
  1428. if image.ndim == MONO_CHANNEL_DIMENSIONS:
  1429. image = np.expand_dims(image, axis=-1)
  1430. num_channels = get_num_channels(image)
  1431. for c in range(num_channels):
  1432. image_sp_c = image[..., c]
  1433. # Get unique segment labels (skip 0 if it exists as it's typically background)
  1434. unique_labels = np.unique(segments)
  1435. if unique_labels[0] == 0:
  1436. unique_labels = unique_labels[1:]
  1437. # Calculate mean intensity for each segment
  1438. for idx, label in enumerate(unique_labels):
  1439. # with mod here, because slic can sometimes create more superpixel than requested.
  1440. # replace_samples then does not have enough values, so we just start over with the first one again.
  1441. if replace_samples[idx % len(replace_samples)]:
  1442. mask = segments == label
  1443. mean_intensity = np.mean(image_sp_c[mask])
  1444. if image_sp_c.dtype.kind in ["i", "u", "b"]:
  1445. # After rounding the value can end up slightly outside of the value_range. Hence, we need to clip.
  1446. # We do clip via min(max(...)) instead of np.clip because
  1447. # the latter one does not seem to keep dtypes for dtypes with large itemsizes (e.g. uint64).
  1448. value: int | float
  1449. value = int(np.round(mean_intensity))
  1450. value = min(max(value, min_value), max_value)
  1451. else:
  1452. value = mean_intensity
  1453. image_sp_c[mask] = value
  1454. return fgeometric.resize(image, orig_shape[:2], interpolation) if orig_shape != image.shape else image
  1455. @float32_io
  1456. @clipped
  1457. @preserve_channel_dim
  1458. def unsharp_mask(
  1459. image: np.ndarray,
  1460. ksize: int,
  1461. sigma: float,
  1462. alpha: float,
  1463. threshold: int,
  1464. ) -> np.ndarray:
  1465. """Apply an unsharp mask to an image.
  1466. This function applies an unsharp mask to an image using the Gaussian blur function.
  1467. The unsharp mask is applied by subtracting the blurred image from the original image and
  1468. then adding the result to the original image.
  1469. Args:
  1470. image (np.ndarray): Input image as a numpy array.
  1471. ksize (int): The kernel size to use for the Gaussian blur.
  1472. sigma (float): The sigma value to use for the Gaussian blur.
  1473. alpha (float): The alpha value to use for the unsharp mask.
  1474. threshold (int): The threshold value to use for the unsharp mask.
  1475. Returns:
  1476. np.ndarray: The unsharp mask applied to the image.
  1477. """
  1478. blur_fn = maybe_process_in_chunks(
  1479. cv2.GaussianBlur,
  1480. ksize=(ksize, ksize),
  1481. sigmaX=sigma,
  1482. )
  1483. if image.ndim == NUM_MULTI_CHANNEL_DIMENSIONS and get_num_channels(image) == 1:
  1484. image = np.squeeze(image, axis=-1)
  1485. blur = blur_fn(image)
  1486. residual = image - blur
  1487. # Do not sharpen noise
  1488. mask = np.abs(residual) * 255 > threshold
  1489. mask = mask.astype(np.float32)
  1490. sharp = image + alpha * residual
  1491. # Avoid color noise artefacts.
  1492. sharp = np.clip(sharp, 0, 1, out=sharp)
  1493. soft_mask = blur_fn(mask)
  1494. return add_array(
  1495. multiply(sharp, soft_mask),
  1496. multiply(image, 1 - soft_mask),
  1497. inplace=True,
  1498. )
  1499. @preserve_channel_dim
  1500. def pixel_dropout(
  1501. image: np.ndarray,
  1502. drop_mask: np.ndarray,
  1503. drop_values: np.ndarray,
  1504. ) -> np.ndarray:
  1505. """Apply pixel dropout to the image.
  1506. Args:
  1507. image (np.ndarray): Input image
  1508. drop_mask (np.ndarray): Boolean mask indicating which pixels to drop
  1509. drop_values (np.ndarray): Values to replace dropped pixels with
  1510. Returns:
  1511. np.ndarray: Image with dropped pixels
  1512. """
  1513. return np.where(drop_mask, drop_values, image)
  1514. @float32_io
  1515. @clipped
  1516. @preserve_channel_dim
  1517. def spatter_rain(img: np.ndarray, rain: np.ndarray) -> np.ndarray:
  1518. """Apply spatter rain to an image.
  1519. This function applies spatter rain to an image by adding the rain to the image.
  1520. Args:
  1521. img (np.ndarray): Input image as a numpy array.
  1522. rain (np.ndarray): Rain image as a numpy array.
  1523. Returns:
  1524. np.ndarray: The spatter rain applied to the image.
  1525. """
  1526. return add(img, rain, inplace=False)
  1527. @float32_io
  1528. @clipped
  1529. @preserve_channel_dim
  1530. def spatter_mud(img: np.ndarray, non_mud: np.ndarray, mud: np.ndarray) -> np.ndarray:
  1531. """Apply spatter mud to an image.
  1532. This function applies spatter mud to an image by adding the mud to the image.
  1533. Args:
  1534. img (np.ndarray): Input image as a numpy array.
  1535. non_mud (np.ndarray): Non-mud image as a numpy array.
  1536. mud (np.ndarray): Mud image as a numpy array.
  1537. Returns:
  1538. np.ndarray: The spatter mud applied to the image.
  1539. """
  1540. return add(img * non_mud, mud, inplace=False)
  1541. @uint8_io
  1542. @clipped
  1543. def chromatic_aberration(
  1544. img: np.ndarray,
  1545. primary_distortion_red: float,
  1546. secondary_distortion_red: float,
  1547. primary_distortion_blue: float,
  1548. secondary_distortion_blue: float,
  1549. interpolation: int,
  1550. ) -> np.ndarray:
  1551. """Apply chromatic aberration to an image.
  1552. This function applies chromatic aberration to an image by distorting the red and blue channels.
  1553. Args:
  1554. img (np.ndarray): Input image as a numpy array.
  1555. primary_distortion_red (float): The primary distortion of the red channel.
  1556. secondary_distortion_red (float): The secondary distortion of the red channel.
  1557. primary_distortion_blue (float): The primary distortion of the blue channel.
  1558. secondary_distortion_blue (float): The secondary distortion of the blue channel.
  1559. interpolation (int): The interpolation method to use.
  1560. Returns:
  1561. np.ndarray: The chromatic aberration applied to the image.
  1562. """
  1563. height, width = img.shape[:2]
  1564. # Build camera matrix
  1565. camera_mat = np.eye(3, dtype=np.float32)
  1566. camera_mat[0, 0] = width
  1567. camera_mat[1, 1] = height
  1568. camera_mat[0, 2] = width / 2.0
  1569. camera_mat[1, 2] = height / 2.0
  1570. # Build distortion coefficients
  1571. distortion_coeffs_red = np.array(
  1572. [primary_distortion_red, secondary_distortion_red, 0, 0],
  1573. dtype=np.float32,
  1574. )
  1575. distortion_coeffs_blue = np.array(
  1576. [primary_distortion_blue, secondary_distortion_blue, 0, 0],
  1577. dtype=np.float32,
  1578. )
  1579. # Distort the red and blue channels
  1580. red_distorted = _distort_channel(
  1581. img[..., 0],
  1582. camera_mat,
  1583. distortion_coeffs_red,
  1584. height,
  1585. width,
  1586. interpolation,
  1587. )
  1588. blue_distorted = _distort_channel(
  1589. img[..., 2],
  1590. camera_mat,
  1591. distortion_coeffs_blue,
  1592. height,
  1593. width,
  1594. interpolation,
  1595. )
  1596. return np.dstack([red_distorted, img[..., 1], blue_distorted])
  1597. def _distort_channel(
  1598. channel: np.ndarray,
  1599. camera_mat: np.ndarray,
  1600. distortion_coeffs: np.ndarray,
  1601. height: int,
  1602. width: int,
  1603. interpolation: int,
  1604. ) -> np.ndarray:
  1605. map_x, map_y = cv2.initUndistortRectifyMap(
  1606. cameraMatrix=camera_mat,
  1607. distCoeffs=distortion_coeffs,
  1608. R=None,
  1609. newCameraMatrix=camera_mat,
  1610. size=(width, height),
  1611. m1type=cv2.CV_32FC1,
  1612. )
  1613. return cv2.remap(
  1614. channel,
  1615. map_x,
  1616. map_y,
  1617. interpolation=interpolation,
  1618. borderMode=cv2.BORDER_REPLICATE,
  1619. )
  1620. PLANCKIAN_COEFFS: dict[str, dict[int, list[float]]] = {
  1621. "blackbody": {
  1622. 3_000: [0.6743, 0.4029, 0.0013],
  1623. 3_500: [0.6281, 0.4241, 0.1665],
  1624. 4_000: [0.5919, 0.4372, 0.2513],
  1625. 4_500: [0.5623, 0.4457, 0.3154],
  1626. 5_000: [0.5376, 0.4515, 0.3672],
  1627. 5_500: [0.5163, 0.4555, 0.4103],
  1628. 6_000: [0.4979, 0.4584, 0.4468],
  1629. 6_500: [0.4816, 0.4604, 0.4782],
  1630. 7_000: [0.4672, 0.4619, 0.5053],
  1631. 7_500: [0.4542, 0.4630, 0.5289],
  1632. 8_000: [0.4426, 0.4638, 0.5497],
  1633. 8_500: [0.4320, 0.4644, 0.5681],
  1634. 9_000: [0.4223, 0.4648, 0.5844],
  1635. 9_500: [0.4135, 0.4651, 0.5990],
  1636. 10_000: [0.4054, 0.4653, 0.6121],
  1637. 10_500: [0.3980, 0.4654, 0.6239],
  1638. 11_000: [0.3911, 0.4655, 0.6346],
  1639. 11_500: [0.3847, 0.4656, 0.6444],
  1640. 12_000: [0.3787, 0.4656, 0.6532],
  1641. 12_500: [0.3732, 0.4656, 0.6613],
  1642. 13_000: [0.3680, 0.4655, 0.6688],
  1643. 13_500: [0.3632, 0.4655, 0.6756],
  1644. 14_000: [0.3586, 0.4655, 0.6820],
  1645. 14_500: [0.3544, 0.4654, 0.6878],
  1646. 15_000: [0.3503, 0.4653, 0.6933],
  1647. },
  1648. "cied": {
  1649. 4_000: [0.5829, 0.4421, 0.2288],
  1650. 4_500: [0.5510, 0.4514, 0.2948],
  1651. 5_000: [0.5246, 0.4576, 0.3488],
  1652. 5_500: [0.5021, 0.4618, 0.3941],
  1653. 6_000: [0.4826, 0.4646, 0.4325],
  1654. 6_500: [0.4654, 0.4667, 0.4654],
  1655. 7_000: [0.4502, 0.4681, 0.4938],
  1656. 7_500: [0.4364, 0.4692, 0.5186],
  1657. 8_000: [0.4240, 0.4700, 0.5403],
  1658. 8_500: [0.4127, 0.4705, 0.5594],
  1659. 9_000: [0.4023, 0.4709, 0.5763],
  1660. 9_500: [0.3928, 0.4713, 0.5914],
  1661. 10_000: [0.3839, 0.4715, 0.6049],
  1662. 10_500: [0.3757, 0.4716, 0.6171],
  1663. 11_000: [0.3681, 0.4717, 0.6281],
  1664. 11_500: [0.3609, 0.4718, 0.6380],
  1665. 12_000: [0.3543, 0.4719, 0.6472],
  1666. 12_500: [0.3480, 0.4719, 0.6555],
  1667. 13_000: [0.3421, 0.4719, 0.6631],
  1668. 13_500: [0.3365, 0.4719, 0.6702],
  1669. 14_000: [0.3313, 0.4719, 0.6766],
  1670. 14_500: [0.3263, 0.4719, 0.6826],
  1671. 15_000: [0.3217, 0.4719, 0.6882],
  1672. },
  1673. }
  1674. @clipped
  1675. def planckian_jitter(
  1676. img: np.ndarray,
  1677. temperature: int,
  1678. mode: Literal["blackbody", "cied"],
  1679. ) -> np.ndarray:
  1680. """Apply Planckian jitter to an image.
  1681. This function applies Planckian jitter to an image by linearly interpolating
  1682. between the two closest temperatures in the PLANCKIAN_COEFFS dictionary.
  1683. Args:
  1684. img (np.ndarray): Input image as a numpy array.
  1685. temperature (int): The temperature to apply.
  1686. mode (Literal["blackbody", "cied"]): The mode to use.
  1687. Returns:
  1688. np.ndarray: The Planckian jitter applied to the image.
  1689. """
  1690. img = img.copy()
  1691. # Get the min and max temperatures for the given mode
  1692. min_temp = min(PLANCKIAN_COEFFS[mode].keys())
  1693. max_temp = max(PLANCKIAN_COEFFS[mode].keys())
  1694. # Clamp the temperature to the available range
  1695. temperature = np.clip(temperature, min_temp, max_temp)
  1696. # Linearly interpolate between 2 closest temperatures
  1697. step = 500
  1698. t_left = max(
  1699. (temperature // step) * step,
  1700. min_temp,
  1701. ) # Ensure t_left doesn't go below min_temp
  1702. t_right = min(
  1703. (temperature // step + 1) * step,
  1704. max_temp,
  1705. ) # Ensure t_right doesn't exceed max_temp
  1706. # Handle the case where temperature is at or near min_temp or max_temp
  1707. if t_left == t_right:
  1708. coeffs = np.array(PLANCKIAN_COEFFS[mode][t_left])
  1709. else:
  1710. w_right = (temperature - t_left) / (t_right - t_left)
  1711. w_left = 1 - w_right
  1712. coeffs = w_left * np.array(PLANCKIAN_COEFFS[mode][t_left]) + w_right * np.array(
  1713. PLANCKIAN_COEFFS[mode][t_right],
  1714. )
  1715. img[:, :, 0] = multiply_by_constant(
  1716. img[:, :, 0],
  1717. coeffs[0] / coeffs[1],
  1718. inplace=True,
  1719. )
  1720. img[:, :, 2] = multiply_by_constant(
  1721. img[:, :, 2],
  1722. coeffs[2] / coeffs[1],
  1723. inplace=True,
  1724. )
  1725. return img
  1726. @clipped
  1727. def add_noise(img: np.ndarray, noise: np.ndarray) -> np.ndarray:
  1728. """Add noise to an image.
  1729. This function adds noise to an image by adding the noise to the image.
  1730. Args:
  1731. img (np.ndarray): Input image as a numpy array.
  1732. noise (np.ndarray): Noise as a numpy array.
  1733. Returns:
  1734. np.ndarray: The noise added to the image.
  1735. """
  1736. return add(img, noise, inplace=False)
  1737. def slic(
  1738. image: np.ndarray,
  1739. n_segments: int,
  1740. compactness: float = 10.0,
  1741. max_iterations: int = 10,
  1742. ) -> np.ndarray:
  1743. """Simple Linear Iterative Clustering (SLIC) superpixel segmentation using OpenCV and NumPy.
  1744. Args:
  1745. image (np.ndarray): Input image (2D or 3D numpy array).
  1746. n_segments (int): Approximate number of superpixels to generate.
  1747. compactness (float): Balance between color proximity and space proximity.
  1748. max_iterations (int): Maximum number of iterations for k-means.
  1749. Returns:
  1750. np.ndarray: Segmentation mask where each superpixel has a unique label.
  1751. """
  1752. if image.ndim == MONO_CHANNEL_DIMENSIONS:
  1753. image = image[..., np.newaxis]
  1754. height, width = image.shape[:2]
  1755. num_pixels = height * width
  1756. # Normalize image to [0, 1] range
  1757. image_normalized = image.astype(np.float32) / np.max(image + 1e-6)
  1758. # Initialize cluster centers
  1759. grid_step = int((num_pixels / n_segments) ** 0.5)
  1760. x_range = np.arange(grid_step // 2, width, grid_step)
  1761. y_range = np.arange(grid_step // 2, height, grid_step)
  1762. centers = np.array(
  1763. [(x, y) for y in y_range for x in x_range if x < width and y < height],
  1764. )
  1765. # Initialize labels and distances
  1766. labels = -1 * np.ones((height, width), dtype=np.int32)
  1767. distances = np.full((height, width), np.inf)
  1768. for _ in range(max_iterations):
  1769. for i, center in enumerate(centers):
  1770. y, x = int(center[1]), int(center[0])
  1771. # Define the neighborhood
  1772. y_low, y_high = max(0, y - grid_step), min(height, y + grid_step + 1)
  1773. x_low, x_high = max(0, x - grid_step), min(width, x + grid_step + 1)
  1774. # Compute distances
  1775. crop = image_normalized[y_low:y_high, x_low:x_high]
  1776. color_diff = crop - image_normalized[y, x]
  1777. color_distance = np.sum(color_diff**2, axis=-1)
  1778. yy, xx = np.ogrid[y_low:y_high, x_low:x_high]
  1779. spatial_distance = ((yy - y) ** 2 + (xx - x) ** 2) / (grid_step**2)
  1780. distance = color_distance + compactness * spatial_distance
  1781. mask = distance < distances[y_low:y_high, x_low:x_high]
  1782. distances[y_low:y_high, x_low:x_high][mask] = distance[mask]
  1783. labels[y_low:y_high, x_low:x_high][mask] = i
  1784. # Update centers
  1785. for i in range(len(centers)):
  1786. mask = labels == i
  1787. if np.any(mask):
  1788. centers[i] = np.mean(np.argwhere(mask), axis=0)[::-1]
  1789. return labels
  1790. @preserve_channel_dim
  1791. @float32_io
  1792. def shot_noise(
  1793. img: np.ndarray,
  1794. scale: float,
  1795. random_generator: np.random.Generator,
  1796. ) -> np.ndarray:
  1797. """Apply shot noise to the image.
  1798. Args:
  1799. img (np.ndarray): Input image
  1800. scale (float): Scale factor for the noise
  1801. random_generator (np.random.Generator): Random number generator
  1802. Returns:
  1803. np.ndarray: Image with shot noise
  1804. """
  1805. # Apply inverse gamma correction to work in linear space
  1806. img_linear = cv2.pow(img, 2.2)
  1807. # Scale image values and add small constant to avoid zero values
  1808. scaled_img = (img_linear + scale * 1e-6) / scale
  1809. # Generate Poisson noise
  1810. noisy_img = multiply_by_constant(
  1811. random_generator.poisson(scaled_img).astype(np.float32),
  1812. scale,
  1813. inplace=True,
  1814. )
  1815. # Scale back and apply gamma correction
  1816. return power(np.clip(noisy_img, 0, 1, out=noisy_img), 1 / 2.2)
  1817. def get_safe_brightness_contrast_params(
  1818. alpha: float,
  1819. beta: float,
  1820. max_value: float,
  1821. ) -> tuple[float, float]:
  1822. """Get safe brightness and contrast parameters.
  1823. Args:
  1824. alpha (float): Contrast factor
  1825. beta (float): Brightness factor
  1826. max_value (float): Maximum pixel value
  1827. Returns:
  1828. tuple[float, float]: Safe alpha and beta values
  1829. """
  1830. if alpha > 0:
  1831. # For x = max_value: alpha * max_value + beta <= max_value
  1832. # For x = 0: beta >= 0
  1833. safe_beta = np.clip(beta, 0, max_value)
  1834. # From alpha * max_value + safe_beta <= max_value
  1835. safe_alpha = min(alpha, (max_value - safe_beta) / max_value)
  1836. else:
  1837. # For x = 0: beta <= max_value
  1838. # For x = max_value: alpha * max_value + beta >= 0
  1839. safe_beta = min(beta, max_value)
  1840. # From alpha * max_value + safe_beta >= 0
  1841. safe_alpha = max(alpha, -safe_beta / max_value)
  1842. return safe_alpha, safe_beta
  1843. def generate_noise(
  1844. noise_type: Literal["uniform", "gaussian", "laplace", "beta"],
  1845. spatial_mode: Literal["constant", "per_pixel", "shared"],
  1846. shape: tuple[int, ...],
  1847. params: dict[str, Any] | None,
  1848. max_value: float,
  1849. approximation: float,
  1850. random_generator: np.random.Generator,
  1851. ) -> np.ndarray:
  1852. """Generate noise with optional approximation for speed.
  1853. This function generates noise with optional approximation for speed.
  1854. Args:
  1855. noise_type (Literal["uniform", "gaussian", "laplace", "beta"]): The type of noise to generate.
  1856. spatial_mode (Literal["constant", "per_pixel", "shared"]): The spatial mode to use.
  1857. shape (tuple[int, ...]): The shape of the noise to generate.
  1858. params (dict[str, Any] | None): The parameters of the noise to generate.
  1859. max_value (float): The maximum value of the noise to generate.
  1860. approximation (float): The approximation to use for the noise to generate.
  1861. random_generator (np.random.Generator): The random number generator to use.
  1862. Returns:
  1863. np.ndarray: The noise generated.
  1864. """
  1865. if params is None:
  1866. return np.zeros(shape, dtype=np.float32)
  1867. cv2_seed = random_generator.integers(0, 2**16)
  1868. cv2.setRNGSeed(cv2_seed)
  1869. if spatial_mode == "constant":
  1870. return generate_constant_noise(
  1871. noise_type,
  1872. shape,
  1873. params,
  1874. max_value,
  1875. random_generator,
  1876. )
  1877. if approximation == 1.0:
  1878. if spatial_mode == "shared":
  1879. return generate_shared_noise(
  1880. noise_type,
  1881. shape,
  1882. params,
  1883. max_value,
  1884. random_generator,
  1885. )
  1886. return generate_per_pixel_noise(
  1887. noise_type,
  1888. shape,
  1889. params,
  1890. max_value,
  1891. random_generator,
  1892. )
  1893. # Calculate reduced size for noise generation
  1894. height, width = shape[:2]
  1895. reduced_height = max(1, int(height * approximation))
  1896. reduced_width = max(1, int(width * approximation))
  1897. reduced_shape = (reduced_height, reduced_width) + shape[2:]
  1898. # Generate noise at reduced resolution
  1899. if spatial_mode == "shared":
  1900. noise = generate_shared_noise(
  1901. noise_type,
  1902. reduced_shape,
  1903. params,
  1904. max_value,
  1905. random_generator,
  1906. )
  1907. else: # per_pixel
  1908. noise = generate_per_pixel_noise(
  1909. noise_type,
  1910. reduced_shape,
  1911. params,
  1912. max_value,
  1913. random_generator,
  1914. )
  1915. # Resize noise to original size using existing resize function
  1916. return fgeometric.resize(noise, (height, width), interpolation=cv2.INTER_LINEAR)
  1917. def generate_constant_noise(
  1918. noise_type: Literal["uniform", "gaussian", "laplace", "beta"],
  1919. shape: tuple[int, ...],
  1920. params: dict[str, Any],
  1921. max_value: float,
  1922. random_generator: np.random.Generator,
  1923. ) -> np.ndarray:
  1924. """Generate constant noise.
  1925. This function generates constant noise by sampling from the noise distribution.
  1926. Args:
  1927. noise_type (Literal["uniform", "gaussian", "laplace", "beta"]): The type of noise to generate.
  1928. shape (tuple[int, ...]): The shape of the noise to generate.
  1929. params (dict[str, Any]): The parameters of the noise to generate.
  1930. max_value (float): The maximum value of the noise to generate.
  1931. random_generator (np.random.Generator): The random number generator to use.
  1932. Returns:
  1933. np.ndarray: The constant noise generated.
  1934. """
  1935. num_channels = shape[-1] if len(shape) > MONO_CHANNEL_DIMENSIONS else 1
  1936. return sample_noise(
  1937. noise_type,
  1938. (num_channels,),
  1939. params,
  1940. max_value,
  1941. random_generator,
  1942. )
  1943. def generate_per_pixel_noise(
  1944. noise_type: Literal["uniform", "gaussian", "laplace", "beta"],
  1945. shape: tuple[int, ...],
  1946. params: dict[str, Any],
  1947. max_value: float,
  1948. random_generator: np.random.Generator,
  1949. ) -> np.ndarray:
  1950. """Generate per-pixel noise.
  1951. This function generates per-pixel noise by sampling from the noise distribution.
  1952. Args:
  1953. noise_type (Literal["uniform", "gaussian", "laplace", "beta"]): The type of noise to generate.
  1954. shape (tuple[int, ...]): The shape of the noise to generate.
  1955. params (dict[str, Any]): The parameters of the noise to generate.
  1956. max_value (float): The maximum value of the noise to generate.
  1957. random_generator (np.random.Generator): The random number generator to use.
  1958. Returns:
  1959. np.ndarray: The per-pixel noise generated.
  1960. """
  1961. return sample_noise(noise_type, shape, params, max_value, random_generator)
  1962. def sample_noise(
  1963. noise_type: Literal["uniform", "gaussian", "laplace", "beta"],
  1964. size: tuple[int, ...],
  1965. params: dict[str, Any],
  1966. max_value: float,
  1967. random_generator: np.random.Generator,
  1968. ) -> np.ndarray:
  1969. """Sample from specific noise distribution.
  1970. This function samples from a specific noise distribution.
  1971. Args:
  1972. noise_type (Literal["uniform", "gaussian", "laplace", "beta"]): The type of noise to generate.
  1973. size (tuple[int, ...]): The size of the noise to generate.
  1974. params (dict[str, Any]): The parameters of the noise to generate.
  1975. max_value (float): The maximum value of the noise to generate.
  1976. random_generator (np.random.Generator): The random number generator to use.
  1977. Returns:
  1978. np.ndarray: The noise sampled.
  1979. """
  1980. if noise_type == "uniform":
  1981. return sample_uniform(size, params, random_generator) * max_value
  1982. if noise_type == "gaussian":
  1983. return sample_gaussian(size, params, random_generator) * max_value
  1984. if noise_type == "laplace":
  1985. return sample_laplace(size, params, random_generator) * max_value
  1986. if noise_type == "beta":
  1987. return sample_beta(size, params, random_generator) * max_value
  1988. raise ValueError(f"Unknown noise type: {noise_type}")
  1989. def sample_uniform(
  1990. size: tuple[int, ...],
  1991. params: dict[str, Any],
  1992. random_generator: np.random.Generator,
  1993. ) -> np.ndarray | float:
  1994. """Sample from uniform distribution.
  1995. Args:
  1996. size (tuple[int, ...]): Size of the output array
  1997. params (dict[str, Any]): Distribution parameters
  1998. random_generator (np.random.Generator): Random number generator
  1999. Returns:
  2000. np.ndarray | float: Sampled values
  2001. """
  2002. if len(size) == 1: # constant mode
  2003. ranges = params["ranges"]
  2004. num_channels = size[0]
  2005. if len(ranges) == 1:
  2006. ranges = ranges * num_channels
  2007. elif len(ranges) < num_channels:
  2008. raise ValueError(
  2009. f"Not enough ranges provided. Expected {num_channels}, got {len(ranges)}",
  2010. )
  2011. return np.array(
  2012. [random_generator.uniform(low, high) for low, high in ranges[:num_channels]],
  2013. )
  2014. # use first range for spatial noise
  2015. low, high = params["ranges"][0]
  2016. return random_generator.uniform(low, high, size=size)
  2017. def sample_gaussian(
  2018. size: tuple[int, ...],
  2019. params: dict[str, Any],
  2020. random_generator: np.random.Generator,
  2021. ) -> np.ndarray:
  2022. """Sample from Gaussian distribution.
  2023. This function samples from a Gaussian distribution.
  2024. Args:
  2025. size (tuple[int, ...]): The size of the noise to generate.
  2026. params (dict[str, Any]): The parameters of the noise to generate.
  2027. random_generator (np.random.Generator): The random number generator to use.
  2028. Returns:
  2029. np.ndarray: The Gaussian noise sampled.
  2030. """
  2031. mean = (
  2032. params["mean_range"][0]
  2033. if params["mean_range"][0] == params["mean_range"][1]
  2034. else random_generator.uniform(*params["mean_range"])
  2035. )
  2036. std = (
  2037. params["std_range"][0]
  2038. if params["std_range"][0] == params["std_range"][1]
  2039. else random_generator.uniform(*params["std_range"])
  2040. )
  2041. num_channels = size[2] if len(size) > MONO_CHANNEL_DIMENSIONS else 1
  2042. mean_vector = mean * np.ones(shape=(num_channels,), dtype=np.float32)
  2043. std_dev_vector = std * np.ones(shape=(num_channels,), dtype=np.float32)
  2044. gaussian_sampled_arr = np.zeros(shape=size)
  2045. cv2.randn(dst=gaussian_sampled_arr, mean=mean_vector, stddev=std_dev_vector)
  2046. return gaussian_sampled_arr.astype(np.float32)
  2047. def sample_laplace(
  2048. size: tuple[int, ...],
  2049. params: dict[str, Any],
  2050. random_generator: np.random.Generator,
  2051. ) -> np.ndarray:
  2052. """Sample from Laplace distribution.
  2053. This function samples from a Laplace distribution.
  2054. Args:
  2055. size (tuple[int, ...]): The size of the noise to generate.
  2056. params (dict[str, Any]): The parameters of the noise to generate.
  2057. random_generator (np.random.Generator): The random number generator to use.
  2058. Returns:
  2059. np.ndarray: The Laplace noise sampled.
  2060. """
  2061. loc = random_generator.uniform(*params["mean_range"])
  2062. scale = random_generator.uniform(*params["scale_range"])
  2063. return random_generator.laplace(loc=loc, scale=scale, size=size)
  2064. def sample_beta(
  2065. size: tuple[int, ...],
  2066. params: dict[str, Any],
  2067. random_generator: np.random.Generator,
  2068. ) -> np.ndarray:
  2069. """Sample from Beta distribution.
  2070. This function samples from a Beta distribution.
  2071. Args:
  2072. size (tuple[int, ...]): The size of the noise to generate.
  2073. params (dict[str, Any]): The parameters of the noise to generate.
  2074. random_generator (np.random.Generator): The random number generator to use.
  2075. Returns:
  2076. np.ndarray: The Beta noise sampled.
  2077. """
  2078. alpha = random_generator.uniform(*params["alpha_range"])
  2079. beta = random_generator.uniform(*params["beta_range"])
  2080. scale = random_generator.uniform(*params["scale_range"])
  2081. # Sample from Beta[0,1] and transform to [-scale,scale]
  2082. samples = random_generator.beta(alpha, beta, size=size)
  2083. return (2 * samples - 1) * scale
  2084. def generate_shared_noise(
  2085. noise_type: Literal["uniform", "gaussian", "laplace", "beta"],
  2086. shape: tuple[int, ...],
  2087. params: dict[str, Any],
  2088. max_value: float,
  2089. random_generator: np.random.Generator,
  2090. ) -> np.ndarray:
  2091. """Generate shared noise.
  2092. Args:
  2093. noise_type (Literal["uniform", "gaussian", "laplace", "beta"]): Type of noise to generate
  2094. shape (tuple[int, ...]): Shape of the output array
  2095. params (dict[str, Any]): Distribution parameters
  2096. max_value (float): Maximum value for the noise
  2097. random_generator (np.random.Generator): Random number generator
  2098. Returns:
  2099. np.ndarray: Generated noise
  2100. """
  2101. # Generate noise for (H, W)
  2102. height, width = shape[:2]
  2103. noise_map = sample_noise(
  2104. noise_type,
  2105. (height, width),
  2106. params,
  2107. max_value,
  2108. random_generator,
  2109. )
  2110. # If input is multichannel, broadcast noise to all channels
  2111. if len(shape) > MONO_CHANNEL_DIMENSIONS:
  2112. return np.broadcast_to(noise_map[..., None], shape)
  2113. return noise_map
  2114. @clipped
  2115. @preserve_channel_dim
  2116. def sharpen_gaussian(
  2117. img: np.ndarray,
  2118. alpha: float,
  2119. kernel_size: int,
  2120. sigma: float,
  2121. ) -> np.ndarray:
  2122. """Sharpen image using Gaussian blur.
  2123. This function sharpens an image using a Gaussian blur.
  2124. Args:
  2125. img (np.ndarray): The image to sharpen.
  2126. alpha (float): The alpha value to use for the sharpening.
  2127. kernel_size (int): The kernel size to use for the Gaussian blur.
  2128. sigma (float): The sigma value to use for the Gaussian blur.
  2129. Returns:
  2130. np.ndarray: The sharpened image.
  2131. """
  2132. blurred = cv2.GaussianBlur(
  2133. img,
  2134. ksize=(kernel_size, kernel_size),
  2135. sigmaX=sigma,
  2136. sigmaY=sigma,
  2137. )
  2138. # Unsharp mask formula: original + alpha * (original - blurred)
  2139. # This is equivalent to: original * (1 + alpha) - alpha * blurred
  2140. return img + alpha * (img - blurred)
  2141. def apply_salt_and_pepper(
  2142. img: np.ndarray,
  2143. salt_mask: np.ndarray,
  2144. pepper_mask: np.ndarray,
  2145. ) -> np.ndarray:
  2146. """Apply salt and pepper noise to an image.
  2147. This function applies salt and pepper noise to an image using pre-computed masks.
  2148. Args:
  2149. img (np.ndarray): The image to apply salt and pepper noise to.
  2150. salt_mask (np.ndarray): The salt mask to use for the salt and pepper noise.
  2151. pepper_mask (np.ndarray): The pepper mask to use for the salt and pepper noise.
  2152. Returns:
  2153. np.ndarray: The image with salt and pepper noise applied.
  2154. """
  2155. # Add channel dimension to masks if image is 3D
  2156. if img.ndim == 3:
  2157. salt_mask = salt_mask[..., None]
  2158. pepper_mask = pepper_mask[..., None]
  2159. max_value = MAX_VALUES_BY_DTYPE[img.dtype]
  2160. return np.where(salt_mask, max_value, np.where(pepper_mask, 0, img))
  2161. # Pre-compute constant kernels
  2162. DIAMOND_KERNEL = np.array(
  2163. [
  2164. [0.25, 0.0, 0.25],
  2165. [0.0, 0.0, 0.0],
  2166. [0.25, 0.0, 0.25],
  2167. ],
  2168. dtype=np.float32,
  2169. )
  2170. SQUARE_KERNEL = np.array(
  2171. [
  2172. [0.0, 0.25, 0.0],
  2173. [0.25, 0.0, 0.25],
  2174. [0.0, 0.25, 0.0],
  2175. ],
  2176. dtype=np.float32,
  2177. )
  2178. # Pre-compute initial grid
  2179. INITIAL_GRID_SIZE = (3, 3)
  2180. def generate_plasma_pattern(
  2181. target_shape: tuple[int, int],
  2182. roughness: float,
  2183. random_generator: np.random.Generator,
  2184. ) -> np.ndarray:
  2185. """Generate a plasma pattern.
  2186. This function generates a plasma pattern using the diamond-square algorithm.
  2187. Args:
  2188. target_shape (tuple[int, int]): The shape of the plasma pattern to generate.
  2189. roughness (float): The roughness of the plasma pattern.
  2190. random_generator (np.random.Generator): The random number generator to use.
  2191. Returns:
  2192. np.ndarray: The plasma pattern generated.
  2193. """
  2194. def one_diamond_square_step(current_grid: np.ndarray, noise_scale: float) -> np.ndarray:
  2195. next_height = (current_grid.shape[0] - 1) * 2 + 1
  2196. next_width = (current_grid.shape[1] - 1) * 2 + 1
  2197. # Pre-allocate expanded grid
  2198. expanded_grid = np.zeros((next_height, next_width), dtype=np.float32)
  2199. # Generate all noise at once for both steps (already scaled by noise_scale)
  2200. all_noise = random_generator.uniform(-noise_scale, noise_scale, (next_height, next_width)).astype(np.float32)
  2201. # Copy existing points with noise
  2202. expanded_grid[::2, ::2] = current_grid + all_noise[::2, ::2]
  2203. # Diamond step - keep separate for natural look
  2204. diamond_interpolation = cv2.filter2D(expanded_grid, -1, DIAMOND_KERNEL, borderType=cv2.BORDER_CONSTANT)
  2205. diamond_mask = diamond_interpolation > 0
  2206. expanded_grid += (diamond_interpolation + all_noise) * diamond_mask
  2207. # Square step - keep separate for natural look
  2208. square_interpolation = cv2.filter2D(expanded_grid, -1, SQUARE_KERNEL, borderType=cv2.BORDER_CONSTANT)
  2209. square_mask = square_interpolation > 0
  2210. expanded_grid += (square_interpolation + all_noise) * square_mask
  2211. # Normalize after each step to prevent value drift
  2212. return cv2.normalize(expanded_grid, None, 0, 1, cv2.NORM_MINMAX, dtype=cv2.CV_32F)
  2213. # Pre-compute noise scales
  2214. max_dimension = max(target_shape)
  2215. power_of_two_size = 2 ** np.ceil(np.log2(max_dimension - 1)) + 1
  2216. total_steps = int(np.log2(power_of_two_size - 1) - 1)
  2217. noise_scales = np.float32([roughness**i for i in range(total_steps)])
  2218. # Initialize with small random grid
  2219. plasma_grid = random_generator.uniform(-1, 1, (3, 3)).astype(np.float32)
  2220. # Recursively apply diamond-square steps
  2221. for noise_scale in noise_scales:
  2222. plasma_grid = one_diamond_square_step(plasma_grid, noise_scale)
  2223. return np.clip(
  2224. cv2.normalize(plasma_grid[: target_shape[0], : target_shape[1]], None, 0, 1, cv2.NORM_MINMAX, dtype=cv2.CV_32F),
  2225. 0,
  2226. 1,
  2227. )
  2228. @clipped
  2229. @float32_io
  2230. def apply_plasma_brightness_contrast(
  2231. img: np.ndarray,
  2232. brightness_factor: float,
  2233. contrast_factor: float,
  2234. plasma_pattern: np.ndarray,
  2235. ) -> np.ndarray:
  2236. """Apply plasma-based brightness and contrast adjustments.
  2237. This function applies plasma-based brightness and contrast adjustments to an image.
  2238. Args:
  2239. img (np.ndarray): The image to apply the brightness and contrast adjustments to.
  2240. brightness_factor (float): The brightness factor to apply.
  2241. contrast_factor (float): The contrast factor to apply.
  2242. plasma_pattern (np.ndarray): The plasma pattern to use for the brightness and contrast adjustments.
  2243. Returns:
  2244. np.ndarray: The image with the brightness and contrast adjustments applied.
  2245. """
  2246. # Early return if no adjustments needed
  2247. if brightness_factor == 0 and contrast_factor == 0:
  2248. return img
  2249. img = img.copy()
  2250. # Expand plasma pattern once if needed
  2251. if img.ndim > MONO_CHANNEL_DIMENSIONS:
  2252. plasma_pattern = np.tile(plasma_pattern[..., np.newaxis], (1, 1, img.shape[-1]))
  2253. # Apply brightness adjustment
  2254. if brightness_factor != 0:
  2255. brightness_adjustment = multiply(plasma_pattern, brightness_factor, inplace=False)
  2256. img = add(img, brightness_adjustment, inplace=True)
  2257. # Apply contrast adjustment
  2258. if contrast_factor != 0:
  2259. mean = img.mean()
  2260. contrast_weights = multiply(plasma_pattern, contrast_factor, inplace=False) + 1
  2261. img = multiply(img, contrast_weights, inplace=True)
  2262. mean_factor = mean * (1.0 - contrast_weights)
  2263. return add(img, mean_factor, inplace=True)
  2264. return img
  2265. @clipped
  2266. def apply_plasma_shadow(
  2267. img: np.ndarray,
  2268. intensity: float,
  2269. plasma_pattern: np.ndarray,
  2270. ) -> np.ndarray:
  2271. """Apply plasma shadow to the image.
  2272. Args:
  2273. img (np.ndarray): Input image
  2274. intensity (float): Shadow intensity
  2275. plasma_pattern (np.ndarray): Plasma pattern to use
  2276. Returns:
  2277. np.ndarray: Image with plasma shadow
  2278. """
  2279. # Scale plasma pattern by intensity first (scalar operation)
  2280. scaled_pattern = plasma_pattern * intensity
  2281. # Expand dimensions only once if needed
  2282. if img.ndim > MONO_CHANNEL_DIMENSIONS:
  2283. scaled_pattern = scaled_pattern[..., np.newaxis]
  2284. # Single multiply operation
  2285. return img * (1 - scaled_pattern)
  2286. def create_directional_gradient(height: int, width: int, angle: float) -> np.ndarray:
  2287. """Create a directional gradient in [0, 1] range.
  2288. This function creates a directional gradient in the [0, 1] range.
  2289. Args:
  2290. height (int): The height of the image.
  2291. width (int): The width of the image.
  2292. angle (float): The angle of the gradient.
  2293. Returns:
  2294. np.ndarray: The directional gradient.
  2295. """
  2296. # Fast path for horizontal gradients
  2297. if angle == 0:
  2298. return np.linspace(0, 1, width, dtype=np.float32)[None, :] * np.ones((height, 1), dtype=np.float32)
  2299. if angle == 180:
  2300. return np.linspace(1, 0, width, dtype=np.float32)[None, :] * np.ones((height, 1), dtype=np.float32)
  2301. # Fast path for vertical gradients
  2302. if angle == 90:
  2303. return np.linspace(0, 1, height, dtype=np.float32)[:, None] * np.ones((1, width), dtype=np.float32)
  2304. if angle == 270:
  2305. return np.linspace(1, 0, height, dtype=np.float32)[:, None] * np.ones((1, width), dtype=np.float32)
  2306. # Fast path for diagonal gradients using broadcasting
  2307. if angle in (45, 135, 225, 315):
  2308. x = np.linspace(0, 1, width, dtype=np.float32)[None, :] # Horizontal
  2309. y = np.linspace(0, 1, height, dtype=np.float32)[:, None] # Vertical
  2310. if angle == 45: # Bottom-left to top-right
  2311. return cv2.normalize(x + y, None, 0, 1, cv2.NORM_MINMAX, dtype=cv2.CV_32F)
  2312. if angle == 135: # Bottom-right to top-left
  2313. return cv2.normalize((1 - x) + y, None, 0, 1, cv2.NORM_MINMAX, dtype=cv2.CV_32F)
  2314. if angle == 225: # Top-right to bottom-left
  2315. return cv2.normalize((1 - x) + (1 - y), None, 0, 1, cv2.NORM_MINMAX, dtype=cv2.CV_32F)
  2316. # angle == 315: # Top-left to bottom-right
  2317. return cv2.normalize(x + (1 - y), None, 0, 1, cv2.NORM_MINMAX, dtype=cv2.CV_32F)
  2318. # General case for arbitrary angles using broadcasting
  2319. y = np.linspace(0, 1, height, dtype=np.float32)[:, None] # Column vector
  2320. x = np.linspace(0, 1, width, dtype=np.float32)[None, :] # Row vector
  2321. angle_rad = np.deg2rad(angle)
  2322. cos_a = math.cos(angle_rad)
  2323. sin_a = math.sin(angle_rad)
  2324. cv2.multiply(x, cos_a, dst=x)
  2325. cv2.multiply(y, sin_a, dst=y)
  2326. return x + y
  2327. @float32_io
  2328. def apply_linear_illumination(img: np.ndarray, intensity: float, angle: float) -> np.ndarray:
  2329. """Apply linear illumination to the image.
  2330. Args:
  2331. img (np.ndarray): Input image
  2332. intensity (float): Illumination intensity
  2333. angle (float): Illumination angle in radians
  2334. Returns:
  2335. np.ndarray: Image with linear illumination
  2336. """
  2337. height, width = img.shape[:2]
  2338. abs_intensity = abs(intensity)
  2339. # Create gradient and handle negative intensity in one step
  2340. gradient = create_directional_gradient(height, width, angle)
  2341. if intensity < 0:
  2342. cv2.subtract(1, gradient, dst=gradient)
  2343. cv2.multiply(gradient, 2 * abs_intensity, dst=gradient)
  2344. cv2.add(gradient, 1 - abs_intensity, dst=gradient)
  2345. # Add channel dimension if needed
  2346. if img.ndim == NUM_MULTI_CHANNEL_DIMENSIONS:
  2347. gradient = gradient[..., np.newaxis]
  2348. return multiply_by_array(img, gradient)
  2349. @clipped
  2350. def apply_corner_illumination(
  2351. img: np.ndarray,
  2352. intensity: float,
  2353. corner: Literal[0, 1, 2, 3],
  2354. ) -> np.ndarray:
  2355. """Apply corner illumination to the image.
  2356. Args:
  2357. img (np.ndarray): Input image
  2358. intensity (float): Illumination intensity
  2359. corner (Literal[0, 1, 2, 3]): The corner to apply the illumination to.
  2360. Returns:
  2361. np.ndarray: Image with corner illumination applied.
  2362. """
  2363. if intensity == 0:
  2364. return img.copy()
  2365. height, width = img.shape[:2]
  2366. # Pre-compute diagonal length once
  2367. diagonal_length = math.sqrt(height * height + width * width)
  2368. # Create inverted distance map mask directly
  2369. # Use uint8 for distanceTransform regardless of input dtype
  2370. mask = np.full((height, width), 255, dtype=np.uint8)
  2371. # Use array indexing instead of conditionals
  2372. corners = [(0, 0), (0, width - 1), (height - 1, width - 1), (height - 1, 0)]
  2373. mask[corners[corner]] = 0
  2374. # Calculate distance transform
  2375. pattern = cv2.distanceTransform(
  2376. mask,
  2377. distanceType=cv2.DIST_L2,
  2378. maskSize=cv2.DIST_MASK_PRECISE,
  2379. dstType=cv2.CV_32F, # Specify float output directly
  2380. )
  2381. # Combine operations to reduce array copies
  2382. cv2.multiply(pattern, -intensity / diagonal_length, dst=pattern)
  2383. cv2.add(pattern, 1, dst=pattern)
  2384. if img.ndim == NUM_MULTI_CHANNEL_DIMENSIONS:
  2385. pattern = cv2.merge([pattern] * img.shape[2])
  2386. return multiply_by_array(img, pattern)
  2387. @clipped
  2388. def apply_gaussian_illumination(
  2389. img: np.ndarray,
  2390. intensity: float,
  2391. center: tuple[float, float],
  2392. sigma: float,
  2393. ) -> np.ndarray:
  2394. """Apply gaussian illumination to the image.
  2395. Args:
  2396. img (np.ndarray): Input image
  2397. intensity (float): Illumination intensity
  2398. center (tuple[float, float]): The center of the illumination.
  2399. sigma (float): The sigma of the illumination.
  2400. """
  2401. if intensity == 0:
  2402. return img.copy()
  2403. height, width = img.shape[:2]
  2404. # Pre-compute constants
  2405. center_x = width * center[0]
  2406. center_y = height * center[1]
  2407. sigma2 = 2 * (max(height, width) * sigma) ** 2 # Pre-compute denominator
  2408. # Create coordinate grid and calculate distances in-place
  2409. y, x = np.ogrid[:height, :width]
  2410. x = x.astype(np.float32)
  2411. y = y.astype(np.float32)
  2412. x -= center_x
  2413. y -= center_y
  2414. # Calculate squared distances in-place
  2415. cv2.multiply(x, x, dst=x)
  2416. cv2.multiply(y, y, dst=y)
  2417. x = x + y
  2418. # Calculate gaussian directly into x array
  2419. cv2.multiply(x, -1 / sigma2, dst=x)
  2420. cv2.exp(x, dst=x)
  2421. # Scale by intensity
  2422. cv2.multiply(x, intensity, dst=x)
  2423. cv2.add(x, 1, dst=x)
  2424. if img.ndim == NUM_MULTI_CHANNEL_DIMENSIONS:
  2425. x = cv2.merge([x] * img.shape[2])
  2426. return multiply_by_array(img, x)
  2427. @uint8_io
  2428. def auto_contrast(
  2429. img: np.ndarray,
  2430. cutoff: float,
  2431. ignore: int | None,
  2432. method: Literal["cdf", "pil"],
  2433. ) -> np.ndarray:
  2434. """Apply automatic contrast enhancement.
  2435. Args:
  2436. img (np.ndarray): Input image
  2437. cutoff (float): Cutoff percentage for histogram
  2438. ignore (int | None): Value to ignore in histogram
  2439. method (Literal["cdf", "pil"]): Method to use for contrast enhancement
  2440. Returns:
  2441. np.ndarray: Image with enhanced contrast
  2442. """
  2443. result = img.copy()
  2444. num_channels = get_num_channels(img)
  2445. max_value = MAX_VALUES_BY_DTYPE[img.dtype]
  2446. # Pre-compute histograms using cv2.calcHist - much faster than np.histogram
  2447. if img.ndim > MONO_CHANNEL_DIMENSIONS:
  2448. channels = cv2.split(img)
  2449. hists: list[np.ndarray] = []
  2450. for i, channel in enumerate(channels):
  2451. if ignore is not None and i == ignore:
  2452. hists.append(None)
  2453. continue
  2454. mask = None if ignore is None else (channel != ignore)
  2455. hist = cv2.calcHist([channel], [0], mask, [256], [0, max_value])
  2456. hists.append(hist.ravel())
  2457. for i in range(num_channels):
  2458. if ignore is not None and i == ignore:
  2459. continue
  2460. if img.ndim > MONO_CHANNEL_DIMENSIONS:
  2461. hist = hists[i]
  2462. channel = channels[i]
  2463. else:
  2464. mask = None if ignore is None else (img != ignore)
  2465. hist = cv2.calcHist([img], [0], mask, [256], [0, max_value]).ravel()
  2466. channel = img
  2467. lo, hi = get_histogram_bounds(hist, cutoff)
  2468. if hi <= lo:
  2469. continue
  2470. lut = create_contrast_lut(hist, lo, hi, max_value, method)
  2471. if ignore is not None:
  2472. lut[ignore] = ignore
  2473. if img.ndim > MONO_CHANNEL_DIMENSIONS:
  2474. result[..., i] = sz_lut(channel, lut)
  2475. else:
  2476. result = sz_lut(channel, lut)
  2477. return result
  2478. def create_contrast_lut(
  2479. hist: np.ndarray,
  2480. min_intensity: int,
  2481. max_intensity: int,
  2482. max_value: int,
  2483. method: Literal["cdf", "pil"],
  2484. ) -> np.ndarray:
  2485. """Create lookup table for contrast adjustment.
  2486. This function creates a lookup table for contrast adjustment.
  2487. Args:
  2488. hist (np.ndarray): Histogram of the image.
  2489. min_intensity (int): Minimum intensity of the histogram.
  2490. max_intensity (int): Maximum intensity of the histogram.
  2491. max_value (int): Maximum value of the lookup table.
  2492. method (Literal["cdf", "pil"]): Method to use for contrast enhancement.
  2493. Returns:
  2494. np.ndarray: Lookup table for contrast adjustment.
  2495. """
  2496. if min_intensity >= max_intensity:
  2497. return np.zeros(256, dtype=np.uint8)
  2498. if method == "cdf":
  2499. hist_range = hist[min_intensity : max_intensity + 1]
  2500. cdf = hist_range.cumsum()
  2501. if cdf[-1] == 0: # No valid pixels
  2502. return np.arange(256, dtype=np.uint8)
  2503. # Normalize CDF to full range
  2504. cdf = (cdf - cdf[0]) * max_value / (cdf[-1] - cdf[0])
  2505. # Create lookup table
  2506. lut = np.zeros(256, dtype=np.uint8)
  2507. lut[min_intensity : max_intensity + 1] = np.clip(np.round(cdf), 0, max_value).astype(np.uint8)
  2508. lut[max_intensity + 1 :] = max_value
  2509. return lut
  2510. # "pil" method
  2511. scale = max_value / (max_intensity - min_intensity)
  2512. indices = np.arange(256, dtype=float)
  2513. # Changed: Use np.round to get 128 for middle value
  2514. # Test expects [0, 128, 255] for range [0, 2]
  2515. lut = np.clip(np.round((indices - min_intensity) * scale), 0, max_value).astype(np.uint8)
  2516. lut[:min_intensity] = 0
  2517. lut[max_intensity + 1 :] = max_value
  2518. return lut
  2519. def get_histogram_bounds(hist: np.ndarray, cutoff: float) -> tuple[int, int]:
  2520. """Get the low and high bounds of the histogram.
  2521. This function gets the low and high bounds of the histogram.
  2522. Args:
  2523. hist (np.ndarray): Histogram of the image.
  2524. cutoff (float): Cutoff percentage for histogram.
  2525. Returns:
  2526. tuple[int, int]: Low and high bounds of the histogram.
  2527. """
  2528. if not cutoff:
  2529. non_zero_intensities = np.nonzero(hist)[0]
  2530. if len(non_zero_intensities) == 0:
  2531. return 0, 0
  2532. return int(non_zero_intensities[0]), int(non_zero_intensities[-1])
  2533. total_pixels = float(hist.sum())
  2534. if total_pixels == 0:
  2535. return 0, 0
  2536. pixels_to_cut = total_pixels * cutoff / 100.0
  2537. # Special case for uniform 256-bin histogram
  2538. if len(hist) == 256 and np.all(hist == hist[0]):
  2539. min_intensity = int(len(hist) * cutoff / 100) # floor division
  2540. max_intensity = len(hist) - min_intensity - 1
  2541. return min_intensity, max_intensity
  2542. # Find minimum intensity
  2543. cumsum = 0.0
  2544. min_intensity = 0
  2545. for i in range(len(hist)):
  2546. cumsum += hist[i]
  2547. if cumsum >= pixels_to_cut: # Use >= for left bound
  2548. min_intensity = i + 1
  2549. break
  2550. min_intensity = min(min_intensity, len(hist) - 1)
  2551. # Find maximum intensity
  2552. cumsum = 0.0
  2553. max_intensity = len(hist) - 1
  2554. for i in range(len(hist) - 1, -1, -1):
  2555. cumsum += hist[i]
  2556. if cumsum >= pixels_to_cut: # Use >= for right bound
  2557. max_intensity = i
  2558. break
  2559. # Handle edge cases
  2560. if min_intensity > max_intensity:
  2561. mid_point = (len(hist) - 1) // 2
  2562. return mid_point, mid_point
  2563. return min_intensity, max_intensity
  2564. def get_drop_mask(
  2565. shape: tuple[int, ...],
  2566. per_channel: bool,
  2567. dropout_prob: float,
  2568. random_generator: np.random.Generator,
  2569. ) -> np.ndarray:
  2570. """Generate dropout mask.
  2571. This function generates a dropout mask.
  2572. Args:
  2573. shape (tuple[int, ...]): Shape of the output mask
  2574. per_channel (bool): Whether to apply dropout per channel
  2575. dropout_prob (float): Dropout probability
  2576. random_generator (np.random.Generator): Random number generator
  2577. Returns:
  2578. np.ndarray: Dropout mask
  2579. """
  2580. if per_channel or len(shape) == 2:
  2581. return random_generator.choice(
  2582. [True, False],
  2583. shape,
  2584. p=[dropout_prob, 1 - dropout_prob],
  2585. )
  2586. # Generate 2D mask and expand to match channels
  2587. mask_2d = random_generator.choice(
  2588. [True, False],
  2589. shape[:2],
  2590. p=[dropout_prob, 1 - dropout_prob],
  2591. )
  2592. # If input is 2D, return 2D mask
  2593. if len(shape) == 2:
  2594. return mask_2d
  2595. # For 3D input, expand and repeat across channels
  2596. return np.repeat(mask_2d[..., None], shape[2], axis=2)
  2597. def generate_random_values(
  2598. channels: int,
  2599. dtype: np.dtype,
  2600. random_generator: np.random.Generator,
  2601. ) -> np.ndarray:
  2602. """Generate random values.
  2603. Args:
  2604. channels (int): Number of channels
  2605. dtype (np.dtype): Data type of the output array
  2606. random_generator (np.random.Generator): Random number generator
  2607. Returns:
  2608. np.ndarray: Random values
  2609. """
  2610. if dtype == np.uint8:
  2611. return random_generator.integers(
  2612. 0,
  2613. int(MAX_VALUES_BY_DTYPE[dtype]),
  2614. size=channels,
  2615. dtype=dtype,
  2616. )
  2617. if dtype == np.float32:
  2618. return random_generator.uniform(0, 1, size=channels).astype(dtype)
  2619. raise ValueError(f"Unsupported dtype: {dtype}")
  2620. def prepare_drop_values(
  2621. array: np.ndarray,
  2622. value: float | Sequence[float] | np.ndarray | None,
  2623. random_generator: np.random.Generator,
  2624. ) -> np.ndarray:
  2625. """Prepare values to fill dropped pixels.
  2626. Args:
  2627. array (np.ndarray): Input array to determine shape and dtype
  2628. value (float | Sequence[float] | np.ndarray | None): User-specified drop values or None for random
  2629. random_generator (np.random.Generator): Random number generator
  2630. Returns:
  2631. np.ndarray: Array of values matching input shape
  2632. """
  2633. if value is None:
  2634. channels = get_num_channels(array)
  2635. values = generate_random_values(channels, array.dtype, random_generator)
  2636. elif isinstance(value, (int, float)):
  2637. return np.full(array.shape, value, dtype=array.dtype)
  2638. else:
  2639. values = np.array(value, dtype=array.dtype).reshape(-1)
  2640. # For monochannel input, return single value
  2641. if array.ndim == 2:
  2642. return np.full(array.shape, values[0], dtype=array.dtype)
  2643. # For multichannel input, broadcast values to full shape
  2644. return np.full(array.shape[:2] + (len(values),), values, dtype=array.dtype)
  2645. def get_mask_array(data: dict[str, Any]) -> np.ndarray | None:
  2646. """Get mask array from input data if it exists."""
  2647. if "mask" in data:
  2648. return data["mask"]
  2649. return data["masks"][0] if "masks" in data else None
  2650. def get_rain_params(
  2651. liquid_layer: np.ndarray,
  2652. color: np.ndarray,
  2653. intensity: float,
  2654. ) -> dict[str, Any]:
  2655. """Generate parameters for rain effect.
  2656. This function generates parameters for a rain effect.
  2657. Args:
  2658. liquid_layer (np.ndarray): Liquid layer of the image.
  2659. color (np.ndarray): Color of the rain.
  2660. intensity (float): Intensity of the rain.
  2661. Returns:
  2662. dict[str, Any]: Parameters for the rain effect.
  2663. """
  2664. liquid_layer = clip(liquid_layer * 255, np.uint8, inplace=False)
  2665. # Generate distance transform with more defined edges
  2666. dist = 255 - cv2.Canny(liquid_layer, 50, 150)
  2667. dist = cv2.distanceTransform(dist, cv2.DIST_L2, 5)
  2668. _, dist = cv2.threshold(dist, 20, 20, cv2.THRESH_TRUNC)
  2669. # Use separate blur operations for better drop formation
  2670. dist = cv2.GaussianBlur(
  2671. dist,
  2672. ksize=(3, 3),
  2673. sigmaX=1, # Add slight sigma for smoother drops
  2674. sigmaY=1,
  2675. borderType=cv2.BORDER_REPLICATE,
  2676. )
  2677. dist = clip(dist, np.uint8, inplace=True)
  2678. # Enhance contrast in the distance map
  2679. dist = equalize(dist)
  2680. # Modified kernel for more natural drop shapes
  2681. ker = np.array(
  2682. [
  2683. [-2, -1, 0],
  2684. [-1, 1, 1],
  2685. [0, 1, 2],
  2686. ],
  2687. dtype=np.float32,
  2688. )
  2689. # Apply convolution with better precision
  2690. dist = convolve(dist, ker)
  2691. # Final blur with larger kernel for smoother drops
  2692. dist = cv2.GaussianBlur(
  2693. dist,
  2694. ksize=(5, 5), # Increased kernel size
  2695. sigmaX=1.5, # Adjusted sigma
  2696. sigmaY=1.5,
  2697. borderType=cv2.BORDER_REPLICATE,
  2698. ).astype(np.float32)
  2699. # Calculate final rain mask with better blending
  2700. m = liquid_layer.astype(np.float32) * dist
  2701. # Normalize with better handling of edge cases
  2702. m_max = np.max(m, axis=(0, 1))
  2703. if m_max > 0:
  2704. m *= 1 / m_max
  2705. else:
  2706. m = np.zeros_like(m)
  2707. # Apply color with adjusted intensity for more natural look
  2708. drops = m[:, :, None] * color * (intensity * 0.9) # Slightly reduced intensity
  2709. return {
  2710. "drops": drops,
  2711. }
  2712. def get_mud_params(
  2713. liquid_layer: np.ndarray,
  2714. color: np.ndarray,
  2715. cutout_threshold: float,
  2716. sigma: float,
  2717. intensity: float,
  2718. random_generator: np.random.Generator,
  2719. ) -> dict[str, Any]:
  2720. """Generate parameters for mud effect.
  2721. This function generates parameters for a mud effect.
  2722. Args:
  2723. liquid_layer (np.ndarray): Liquid layer of the image.
  2724. color (np.ndarray): Color of the mud.
  2725. cutout_threshold (float): Cutout threshold for the mud.
  2726. sigma (float): Sigma for the Gaussian blur.
  2727. intensity (float): Intensity of the mud.
  2728. random_generator (np.random.Generator): Random number generator.
  2729. Returns:
  2730. dict[str, Any]: Parameters for the mud effect.
  2731. """
  2732. height, width = liquid_layer.shape
  2733. # Create initial mask (ensure we have some non-zero values)
  2734. mask = (liquid_layer > cutout_threshold).astype(np.float32)
  2735. if np.sum(mask) == 0: # If mask is all zeros
  2736. # Force minimum coverage of 10%
  2737. num_pixels = height * width
  2738. num_needed = max(1, int(0.1 * num_pixels)) # At least 1 pixel
  2739. flat_indices = random_generator.choice(num_pixels, num_needed, replace=False)
  2740. mask = np.zeros_like(liquid_layer, dtype=np.float32)
  2741. mask.flat[flat_indices] = 1.0
  2742. # Apply Gaussian blur if sigma > 0
  2743. if sigma > 0:
  2744. mask = cv2.GaussianBlur(
  2745. mask,
  2746. ksize=(0, 0),
  2747. sigmaX=sigma,
  2748. sigmaY=sigma,
  2749. borderType=cv2.BORDER_REPLICATE,
  2750. )
  2751. # Safe normalization (avoid division by zero)
  2752. mask_max = np.max(mask)
  2753. if mask_max > 0:
  2754. mask = mask / mask_max
  2755. else:
  2756. # If mask is somehow all zeros after blur, force some effect
  2757. mask[0, 0] = 1.0
  2758. # Scale by intensity directly (no minimum)
  2759. mask = mask * intensity
  2760. # Create mud effect array
  2761. mud = np.zeros((height, width, 3), dtype=np.float32)
  2762. # Apply color directly - the intensity scaling is already handled
  2763. for i in range(3):
  2764. mud[..., i] = mask * color[i]
  2765. # Create complementary non-mud array
  2766. non_mud = np.ones_like(mud)
  2767. for i in range(3):
  2768. if color[i] > 0:
  2769. non_mud[..., i] = np.clip((color[i] - mud[..., i]) / color[i], 0, 1)
  2770. else:
  2771. non_mud[..., i] = 1.0 - mask
  2772. return {
  2773. "mud": mud.astype(np.float32),
  2774. "non_mud": non_mud.astype(np.float32),
  2775. }
  2776. # Standard reference H&E stain matrices
  2777. STAIN_MATRICES = {
  2778. "ruifrok": np.array(
  2779. [ # Ruifrok & Johnston standard reference
  2780. [0.644211, 0.716556, 0.266844], # Hematoxylin
  2781. [0.092789, 0.954111, 0.283111], # Eosin
  2782. ],
  2783. ),
  2784. "macenko": np.array(
  2785. [ # Macenko's reference
  2786. [0.5626, 0.7201, 0.4062],
  2787. [0.2159, 0.8012, 0.5581],
  2788. ],
  2789. ),
  2790. "standard": np.array(
  2791. [ # Standard bright-field microscopy
  2792. [0.65, 0.70, 0.29],
  2793. [0.07, 0.99, 0.11],
  2794. ],
  2795. ),
  2796. "high_contrast": np.array(
  2797. [ # Enhanced contrast
  2798. [0.55, 0.88, 0.11],
  2799. [0.12, 0.86, 0.49],
  2800. ],
  2801. ),
  2802. "h_heavy": np.array(
  2803. [ # Hematoxylin dominant
  2804. [0.75, 0.61, 0.32],
  2805. [0.04, 0.93, 0.36],
  2806. ],
  2807. ),
  2808. "e_heavy": np.array(
  2809. [ # Eosin dominant
  2810. [0.60, 0.75, 0.28],
  2811. [0.17, 0.95, 0.25],
  2812. ],
  2813. ),
  2814. "dark": np.array(
  2815. [ # Darker staining
  2816. [0.78, 0.55, 0.28],
  2817. [0.09, 0.97, 0.21],
  2818. ],
  2819. ),
  2820. "light": np.array(
  2821. [ # Lighter staining
  2822. [0.57, 0.71, 0.38],
  2823. [0.15, 0.89, 0.42],
  2824. ],
  2825. ),
  2826. }
  2827. def rgb_to_optical_density(img: np.ndarray, eps: float = 1e-6) -> np.ndarray:
  2828. """Convert RGB image to optical density.
  2829. This function converts an RGB image to optical density.
  2830. Args:
  2831. img (np.ndarray): Input image.
  2832. eps (float): Epsilon value.
  2833. Returns:
  2834. np.ndarray: Optical density image.
  2835. """
  2836. max_value = MAX_VALUES_BY_DTYPE[img.dtype]
  2837. pixel_matrix = img.reshape(-1, 3).astype(np.float32)
  2838. pixel_matrix = np.maximum(pixel_matrix / max_value, eps)
  2839. return -np.log(pixel_matrix)
  2840. def normalize_vectors(vectors: np.ndarray) -> np.ndarray:
  2841. """Normalize vectors.
  2842. This function normalizes vectors.
  2843. Args:
  2844. vectors (np.ndarray): Vectors to normalize.
  2845. Returns:
  2846. np.ndarray: Normalized vectors.
  2847. """
  2848. norms = np.sqrt(np.sum(vectors**2, axis=1, keepdims=True))
  2849. return vectors / norms
  2850. def get_normalizer(method: Literal["vahadane", "macenko"]) -> StainNormalizer:
  2851. """Get stain normalizer based on method.
  2852. This function gets a stain normalizer based on a method.
  2853. Args:
  2854. method (Literal["vahadane", "macenko"]): Method to use for stain normalization.
  2855. Returns:
  2856. StainNormalizer: Stain normalizer.
  2857. """
  2858. return VahadaneNormalizer() if method == "vahadane" else MacenkoNormalizer()
  2859. class StainNormalizer:
  2860. """Base class for stain normalizers."""
  2861. def __init__(self) -> None:
  2862. self.stain_matrix_target = None
  2863. def fit(self, img: np.ndarray) -> None:
  2864. """Fit the stain normalizer to an image.
  2865. This function fits the stain normalizer to an image.
  2866. Args:
  2867. img (np.ndarray): Input image.
  2868. """
  2869. raise NotImplementedError
  2870. class SimpleNMF:
  2871. """Simple Non-negative Matrix Factorization (NMF) for histology stain separation.
  2872. This class implements a simplified version of the Non-negative Matrix Factorization algorithm
  2873. specifically designed for separating Hematoxylin and Eosin (H&E) stains in histopathology images.
  2874. It is used as part of the Vahadane stain normalization method.
  2875. The algorithm decomposes optical density values of H&E stained images into stain color appearances
  2876. (the stain color vectors) and stain concentrations (the density of each stain at each pixel).
  2877. The implementation uses an iterative multiplicative update approach that preserves non-negativity
  2878. constraints, which are physically meaningful for stain separation as concentrations and
  2879. absorption coefficients cannot be negative.
  2880. This implementation is optimized for stability by:
  2881. 1. Initializing with standard H&E reference colors from Ruifrok
  2882. 2. Using normalized projection for initial concentrations
  2883. 3. Applying careful normalization to avoid numerical issues
  2884. Args:
  2885. n_iter (int): Number of iterations for the NMF algorithm. Default: 100
  2886. References:
  2887. - Vahadane, A., et al. (2016): Structure-preserving color normalization and
  2888. sparse stain separation for histological images. IEEE Transactions on
  2889. Medical Imaging, 35(8), 1962-1971.
  2890. - Ruifrok, A. C., & Johnston, D. A. (2001): Quantification of histochemical
  2891. staining by color deconvolution. Analytical and Quantitative Cytology and
  2892. Histology, 23(4), 291-299.
  2893. """
  2894. def __init__(self, n_iter: int = 100):
  2895. self.n_iter = n_iter
  2896. # Initialize with standard H&E colors from Ruifrok
  2897. self.initial_colors = np.array(
  2898. [
  2899. [0.644211, 0.716556, 0.266844], # Hematoxylin
  2900. [0.092789, 0.954111, 0.283111], # Eosin
  2901. ],
  2902. dtype=np.float32,
  2903. )
  2904. def fit_transform(self, optical_density: np.ndarray) -> tuple[np.ndarray, np.ndarray]:
  2905. """Fit the NMF model to optical density.
  2906. This function fits the NMF model to optical density.
  2907. Args:
  2908. optical_density (np.ndarray): Optical density image.
  2909. Returns:
  2910. tuple[np.ndarray, np.ndarray]: Stain concentrations and stain colors.
  2911. """
  2912. # Start with known H&E colors
  2913. stain_colors = self.initial_colors.copy()
  2914. # Initialize concentrations based on projection onto initial colors
  2915. # This gives us a physically meaningful starting point
  2916. stain_colors_normalized = normalize_vectors(stain_colors)
  2917. stain_concentrations = np.maximum(optical_density @ stain_colors_normalized.T, 0)
  2918. # Iterative updates with careful normalization
  2919. eps = 1e-6
  2920. for _ in range(self.n_iter):
  2921. # Update concentrations
  2922. numerator = optical_density @ stain_colors.T
  2923. denominator = stain_concentrations @ (stain_colors @ stain_colors.T)
  2924. stain_concentrations *= numerator / (denominator + eps)
  2925. # Ensure non-negativity
  2926. stain_concentrations = np.maximum(stain_concentrations, 0)
  2927. # Update colors
  2928. numerator = stain_concentrations.T @ optical_density
  2929. denominator = (stain_concentrations.T @ stain_concentrations) @ stain_colors
  2930. stain_colors *= numerator / (denominator + eps)
  2931. # Ensure non-negativity and normalize
  2932. stain_colors = np.maximum(stain_colors, 0)
  2933. stain_colors = normalize_vectors(stain_colors)
  2934. return stain_concentrations, stain_colors
  2935. def order_stains_combined(stain_colors: np.ndarray) -> tuple[int, int]:
  2936. """Order stains using a combination of methods.
  2937. This combines both angular information and spectral characteristics
  2938. for more robust identification.
  2939. Args:
  2940. stain_colors (np.ndarray): Stain colors.
  2941. Returns:
  2942. tuple[int, int]: Hematoxylin and eosin indices.
  2943. """
  2944. # Normalize stain vectors
  2945. stain_colors = normalize_vectors(stain_colors)
  2946. # Calculate angles (Macenko)
  2947. angles = np.mod(np.arctan2(stain_colors[:, 1], stain_colors[:, 0]), np.pi)
  2948. # Calculate spectral ratios (Ruifrok)
  2949. blue_ratio = stain_colors[:, 2] / (np.sum(stain_colors, axis=1) + 1e-6)
  2950. red_ratio = stain_colors[:, 0] / (np.sum(stain_colors, axis=1) + 1e-6)
  2951. # Combine scores
  2952. # High angle and high blue ratio indicates Hematoxylin
  2953. # Low angle and high red ratio indicates Eosin
  2954. scores = angles * blue_ratio - red_ratio
  2955. hematoxylin_idx = np.argmax(scores)
  2956. eosin_idx = 1 - hematoxylin_idx
  2957. return hematoxylin_idx, eosin_idx
  2958. class VahadaneNormalizer(StainNormalizer):
  2959. """A stain normalizer implementation based on Vahadane's method for histopathology images.
  2960. This class implements the "Structure-Preserving Color Normalization and Sparse Stain Separation
  2961. for Histological Images" method proposed by Vahadane et al. The technique uses Non-negative
  2962. Matrix Factorization (NMF) to separate Hematoxylin and Eosin (H&E) stains in histopathology
  2963. images and then normalizes them to a target standard.
  2964. The Vahadane method is particularly effective for histology image normalization because:
  2965. 1. It maintains tissue structure during color normalization
  2966. 2. It performs sparse stain separation, reducing color bleeding
  2967. 3. It adaptively estimates stain vectors from each image
  2968. 4. It preserves biologically relevant information
  2969. This implementation uses SimpleNMF as its core matrix factorization algorithm to extract
  2970. stain color vectors (appearance matrix) and concentration matrices from optical
  2971. density-transformed images. It identifies the Hematoxylin and Eosin stains by their
  2972. characteristic color profiles and spatial distribution.
  2973. References:
  2974. Vahadane, et al., 2016: Structure-preserving color normalization
  2975. and sparse stain separation for histological images. IEEE transactions on medical imaging,
  2976. 35(8), pp.1962-1971.
  2977. Examples:
  2978. >>> import numpy as np
  2979. >>> import albumentations as A
  2980. >>> from albumentations.augmentations.pixel import functional as F
  2981. >>> import cv2
  2982. >>>
  2983. >>> # Load source and target images (H&E stained histopathology)
  2984. >>> source_img = cv2.imread('source_image.png')
  2985. >>> source_img = cv2.cvtColor(source_img, cv2.COLOR_BGR2RGB)
  2986. >>> target_img = cv2.imread('target_image.png')
  2987. >>> target_img = cv2.cvtColor(target_img, cv2.COLOR_BGR2RGB)
  2988. >>>
  2989. >>> # Create and fit the normalizer to the target image
  2990. >>> normalizer = F.VahadaneNormalizer()
  2991. >>> normalizer.fit(target_img)
  2992. >>>
  2993. >>> # Normalize the source image to match the target's stain characteristics
  2994. >>> normalized_img = normalizer.transform(source_img)
  2995. """
  2996. def fit(self, img: np.ndarray) -> None:
  2997. """Fit the Vahadane stain normalizer to an image.
  2998. This function fits the Vahadane stain normalizer to an image.
  2999. Args:
  3000. img (np.ndarray): Input image.
  3001. """
  3002. optical_density = rgb_to_optical_density(img)
  3003. nmf = SimpleNMF(n_iter=100)
  3004. _, stain_colors = nmf.fit_transform(optical_density)
  3005. # Use combined method for robust stain ordering
  3006. hematoxylin_idx, eosin_idx = order_stains_combined(stain_colors)
  3007. self.stain_matrix_target = np.array(
  3008. [
  3009. stain_colors[hematoxylin_idx],
  3010. stain_colors[eosin_idx],
  3011. ],
  3012. )
  3013. class MacenkoNormalizer(StainNormalizer):
  3014. """Macenko stain normalizer with optimized computations."""
  3015. def __init__(self, angular_percentile: float = 99):
  3016. super().__init__()
  3017. self.angular_percentile = angular_percentile
  3018. def fit(self, img: np.ndarray, angular_percentile: float = 99) -> None:
  3019. """Fit the Macenko stain normalizer to an image.
  3020. This function fits the Macenko stain normalizer to an image.
  3021. Args:
  3022. img (np.ndarray): Input image.
  3023. angular_percentile (float): Angular percentile.
  3024. """
  3025. # Step 1: Convert RGB to optical density (OD) space
  3026. optical_density = rgb_to_optical_density(img)
  3027. # Step 2: Remove background pixels
  3028. od_threshold = 0.05
  3029. threshold_mask = (optical_density > od_threshold).any(axis=1)
  3030. tissue_density = optical_density[threshold_mask]
  3031. if len(tissue_density) < 1:
  3032. raise ValueError(f"No tissue pixels found (threshold={od_threshold})")
  3033. # Step 3: Compute covariance matrix
  3034. tissue_density = np.ascontiguousarray(tissue_density, dtype=np.float32)
  3035. od_covariance = cv2.calcCovarMatrix(
  3036. tissue_density,
  3037. None,
  3038. cv2.COVAR_NORMAL | cv2.COVAR_ROWS | cv2.COVAR_SCALE,
  3039. )[0]
  3040. # Step 4: Get principal components
  3041. eigenvalues, eigenvectors = cv2.eigen(od_covariance)[1:]
  3042. idx = np.argsort(eigenvalues.ravel())[-2:]
  3043. principal_eigenvectors = np.ascontiguousarray(eigenvectors[:, idx], dtype=np.float32)
  3044. # Step 5: Project onto eigenvector plane
  3045. # Add small epsilon to avoid numerical instability
  3046. epsilon = 1e-8
  3047. if np.any(np.abs(principal_eigenvectors) < epsilon):
  3048. # Regularize near-zero entries by assigning ±ε based on original sign
  3049. principal_eigenvectors = np.where(
  3050. np.abs(principal_eigenvectors) < epsilon,
  3051. np.where(principal_eigenvectors < 0, -epsilon, epsilon),
  3052. principal_eigenvectors,
  3053. )
  3054. # Add small epsilon to tissue_density to avoid numerical issues
  3055. safe_tissue_density = tissue_density + epsilon
  3056. plane_coordinates = safe_tissue_density @ principal_eigenvectors
  3057. # Step 6: Find angles of extreme points
  3058. polar_angles = np.arctan2(
  3059. plane_coordinates[:, 1],
  3060. plane_coordinates[:, 0],
  3061. )
  3062. # Get robust angle estimates
  3063. hematoxylin_angle = np.percentile(polar_angles, 100 - angular_percentile)
  3064. eosin_angle = np.percentile(polar_angles, angular_percentile)
  3065. # Step 7: Convert angles back to RGB space
  3066. hem_cos, hem_sin = np.cos(hematoxylin_angle), np.sin(hematoxylin_angle)
  3067. eos_cos, eos_sin = np.cos(eosin_angle), np.sin(eosin_angle)
  3068. angle_to_vector = np.array(
  3069. [[hem_cos, hem_sin], [eos_cos, eos_sin]],
  3070. dtype=np.float32,
  3071. )
  3072. # Ensure both matrices have the same data type for cv2.gemm
  3073. principal_eigenvectors_t = np.ascontiguousarray(principal_eigenvectors.T, dtype=np.float32)
  3074. stain_vectors = cv2.gemm(
  3075. angle_to_vector,
  3076. principal_eigenvectors_t,
  3077. 1,
  3078. None,
  3079. 0,
  3080. )
  3081. # Step 8: Ensure non-negativity by taking absolute values
  3082. stain_vectors = np.abs(stain_vectors)
  3083. # Step 9: Normalize vectors to unit length
  3084. stain_vectors = stain_vectors / np.sqrt(np.sum(stain_vectors**2, axis=1, keepdims=True) + epsilon)
  3085. # Step 10: Order vectors as [hematoxylin, eosin]
  3086. self.stain_matrix_target = stain_vectors if stain_vectors[0, 0] > stain_vectors[1, 0] else stain_vectors[::-1]
  3087. def get_tissue_mask(img: np.ndarray, threshold: float = 0.85) -> np.ndarray:
  3088. """Get tissue mask from image.
  3089. Args:
  3090. img (np.ndarray): Input image
  3091. threshold (float): Threshold for tissue detection. Default: 0.85
  3092. Returns:
  3093. np.ndarray: Binary mask where True indicates tissue regions
  3094. """
  3095. # Convert to grayscale using RGB weights: R*0.299 + G*0.587 + B*0.114
  3096. luminosity = img[..., 0] * 0.299 + img[..., 1] * 0.587 + img[..., 2] * 0.114
  3097. # Tissue is darker, so we want pixels below threshold
  3098. mask = luminosity < threshold
  3099. return mask.reshape(-1)
  3100. @clipped
  3101. @float32_io
  3102. def apply_he_stain_augmentation(
  3103. img: np.ndarray,
  3104. stain_matrix: np.ndarray,
  3105. scale_factors: np.ndarray,
  3106. shift_values: np.ndarray,
  3107. augment_background: bool,
  3108. ) -> np.ndarray:
  3109. """Apply HE stain augmentation to an image.
  3110. This function applies HE stain augmentation to an image.
  3111. Args:
  3112. img (np.ndarray): Input image.
  3113. stain_matrix (np.ndarray): Stain matrix.
  3114. scale_factors (np.ndarray): Scale factors.
  3115. shift_values (np.ndarray): Shift values.
  3116. augment_background (bool): Whether to augment the background.
  3117. Returns:
  3118. np.ndarray: Augmented image.
  3119. """
  3120. # Step 1: Convert RGB to optical density space
  3121. optical_density = rgb_to_optical_density(img)
  3122. # Step 2: Calculate stain concentrations using regularized pseudo-inverse
  3123. stain_matrix = np.ascontiguousarray(stain_matrix, dtype=np.float32)
  3124. # Add small regularization term for numerical stability
  3125. regularization = 1e-6
  3126. stain_correlation = stain_matrix @ stain_matrix.T + regularization * np.eye(2)
  3127. density_projection = stain_matrix @ optical_density.T
  3128. try:
  3129. # Solve for stain concentrations
  3130. stain_concentrations = np.linalg.solve(stain_correlation, density_projection).T
  3131. except np.linalg.LinAlgError:
  3132. # Fallback to pseudo-inverse if direct solve fails
  3133. stain_concentrations = np.linalg.lstsq(
  3134. stain_matrix.T,
  3135. optical_density,
  3136. rcond=regularization,
  3137. )[0].T
  3138. # Step 3: Apply concentration adjustments
  3139. if not augment_background:
  3140. # Only modify tissue regions
  3141. tissue_mask = get_tissue_mask(img).reshape(-1)
  3142. stain_concentrations[tissue_mask] = stain_concentrations[tissue_mask] * scale_factors + shift_values
  3143. else:
  3144. # Modify all pixels
  3145. stain_concentrations = stain_concentrations * scale_factors + shift_values
  3146. # Step 4: Reconstruct RGB image
  3147. optical_density_result = stain_concentrations @ stain_matrix
  3148. rgb_result = np.exp(-optical_density_result)
  3149. return rgb_result.reshape(img.shape)
  3150. @clipped
  3151. @preserve_channel_dim
  3152. def convolve(img: np.ndarray, kernel: np.ndarray) -> np.ndarray:
  3153. """Convolve an image with a kernel.
  3154. This function convolves an image with a kernel.
  3155. Args:
  3156. img (np.ndarray): Input image.
  3157. kernel (np.ndarray): Kernel.
  3158. Returns:
  3159. np.ndarray: Convolved image.
  3160. """
  3161. conv_fn = maybe_process_in_chunks(cv2.filter2D, ddepth=-1, kernel=kernel)
  3162. return conv_fn(img)
  3163. @clipped
  3164. @preserve_channel_dim
  3165. def separable_convolve(img: np.ndarray, kernel: np.ndarray) -> np.ndarray:
  3166. """Convolve an image with a separable kernel.
  3167. This function convolves an image with a separable kernel.
  3168. Args:
  3169. img (np.ndarray): Input image.
  3170. kernel (np.ndarray): Kernel.
  3171. Returns:
  3172. np.ndarray: Convolved image.
  3173. """
  3174. conv_fn = maybe_process_in_chunks(cv2.sepFilter2D, ddepth=-1, kernelX=kernel, kernelY=kernel)
  3175. return conv_fn(img)