# Copyright The Lightning team. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. from typing import List, Optional, Union import torch from torch import Tensor from typing_extensions import Literal from torchmetrics.functional.classification.precision_recall_curve import ( _binary_precision_recall_curve_arg_validation, _binary_precision_recall_curve_compute, _binary_precision_recall_curve_format, _binary_precision_recall_curve_tensor_validation, _binary_precision_recall_curve_update, _multiclass_precision_recall_curve_arg_validation, _multiclass_precision_recall_curve_compute, _multiclass_precision_recall_curve_format, _multiclass_precision_recall_curve_tensor_validation, _multiclass_precision_recall_curve_update, _multilabel_precision_recall_curve_arg_validation, _multilabel_precision_recall_curve_compute, _multilabel_precision_recall_curve_format, _multilabel_precision_recall_curve_tensor_validation, _multilabel_precision_recall_curve_update, ) from torchmetrics.utilities.compute import _safe_divide from torchmetrics.utilities.data import _bincount from torchmetrics.utilities.enums import ClassificationTask from torchmetrics.utilities.prints import rank_zero_warn def _reduce_average_precision( precision: Union[Tensor, List[Tensor]], recall: Union[Tensor, List[Tensor]], average: Optional[Literal["macro", "weighted", "none"]] = "macro", weights: Optional[Tensor] = None, ) -> Tensor: """Reduce multiple average precision score into one number.""" if isinstance(precision, Tensor) and isinstance(recall, Tensor): precision = torch.where(torch.isnan(precision), torch.zeros_like(precision), precision) recall = torch.where(torch.isnan(recall), torch.zeros_like(recall), recall) res = -torch.sum((recall[:, 1:] - recall[:, :-1]) * precision[:, :-1], 1) else: res = torch.stack([-torch.sum((r[1:] - r[:-1]) * p[:-1]) for p, r in zip(precision, recall)]) if average is None or average == "none": return res if torch.isnan(res).any(): rank_zero_warn( f"Average precision score for one or more classes was `nan`. Ignoring these classes in {average}-average", UserWarning, ) idx = ~torch.isnan(res) if average == "macro": return res[idx].mean() if average == "weighted" and weights is not None: weights = _safe_divide(weights[idx], weights[idx].sum()) return (res[idx] * weights).sum() raise ValueError("Received an incompatible combinations of inputs to make reduction.") def _binary_average_precision_compute( state: Union[Tensor, tuple[Tensor, Tensor]], thresholds: Optional[Tensor], ) -> Tensor: precision, recall, _ = _binary_precision_recall_curve_compute(state, thresholds) precision = torch.where(torch.isnan(precision), torch.zeros_like(precision), precision) recall = torch.where(torch.isnan(recall), torch.zeros_like(recall), recall) return -torch.sum((recall[1:] - recall[:-1]) * precision[:-1]) def binary_average_precision( preds: Tensor, target: Tensor, thresholds: Optional[Union[int, list[float], Tensor]] = None, ignore_index: Optional[int] = None, validate_args: bool = True, ) -> Tensor: r"""Compute the average precision (AP) score for binary tasks. The AP score summarizes a precision-recall curve as an weighted mean of precisions at each threshold, with the difference in recall from the previous threshold as weight: .. math:: AP = \sum{n} (R_n - R_{n-1}) P_n where :math:`P_n, R_n` is the respective precision and recall at threshold index :math:`n`. This value is equivalent to the area under the precision-recall curve (AUPRC). Accepts the following input tensors: - ``preds`` (float tensor): ``(N, ...)``. Preds should be a tensor containing probabilities or logits for each observation. If preds has values outside [0,1] range we consider the input to be logits and will auto apply sigmoid per element. - ``target`` (int tensor): ``(N, ...)``. Target should be a tensor containing ground truth labels, and therefore only contain {0,1} values (except if `ignore_index` is specified). The value 1 always encodes the positive class. Additional dimension ``...`` will be flattened into the batch dimension. The implementation both supports calculating the metric in a non-binned but accurate version and a binned version that is less accurate but more memory efficient. Setting the `thresholds` argument to `None` will activate the non-binned version that uses memory of size :math:`\mathcal{O}(n_{samples})` whereas setting the `thresholds` argument to either an integer, list or a 1d tensor will use a binned version that uses memory of size :math:`\mathcal{O}(n_{thresholds})` (constant memory). Args: preds: Tensor with predictions target: Tensor with true labels thresholds: Can be one of: - If set to `None`, will use a non-binned approach where thresholds are dynamically calculated from all the data. Most accurate but also most memory consuming approach. - If set to an `int` (larger than 1), will use that number of thresholds linearly spaced from 0 to 1 as bins for the calculation. - If set to an `list` of floats, will use the indicated thresholds in the list as bins for the calculation - If set to an 1d `tensor` of floats, will use the indicated thresholds in the tensor as bins for the calculation. ignore_index: Specifies a target value that is ignored and does not contribute to the metric calculation validate_args: bool indicating if input arguments and tensors should be validated for correctness. Set to ``False`` for faster computations. Returns: A single scalar with the average precision score Example: >>> from torchmetrics.functional.classification import binary_average_precision >>> preds = torch.tensor([0, 0.5, 0.7, 0.8]) >>> target = torch.tensor([0, 1, 1, 0]) >>> binary_average_precision(preds, target, thresholds=None) tensor(0.5833) >>> binary_average_precision(preds, target, thresholds=5) tensor(0.6667) """ if validate_args: _binary_precision_recall_curve_arg_validation(thresholds, ignore_index) _binary_precision_recall_curve_tensor_validation(preds, target, ignore_index) preds, target, thresholds = _binary_precision_recall_curve_format(preds, target, thresholds, ignore_index) state = _binary_precision_recall_curve_update(preds, target, thresholds) return _binary_average_precision_compute(state, thresholds) def _multiclass_average_precision_arg_validation( num_classes: int, average: Optional[Literal["macro", "weighted", "none"]] = "macro", thresholds: Optional[Union[int, list[float], Tensor]] = None, ignore_index: Optional[int] = None, ) -> None: _multiclass_precision_recall_curve_arg_validation(num_classes, thresholds, ignore_index) allowed_average = ("macro", "weighted", "none", None) if average not in allowed_average: raise ValueError(f"Expected argument `average` to be one of {allowed_average} but got {average}") def _multiclass_average_precision_compute( state: Union[Tensor, tuple[Tensor, Tensor]], num_classes: int, average: Optional[Literal["macro", "weighted", "none"]] = "macro", thresholds: Optional[Tensor] = None, ) -> Tensor: precision, recall, _ = _multiclass_precision_recall_curve_compute(state, num_classes, thresholds) return _reduce_average_precision( precision, recall, average, weights=_bincount(state[1], minlength=num_classes).float() if thresholds is None else state[0][:, 1, :].sum(-1), ) def multiclass_average_precision( preds: Tensor, target: Tensor, num_classes: int, average: Optional[Literal["macro", "weighted", "none"]] = "macro", thresholds: Optional[Union[int, list[float], Tensor]] = None, ignore_index: Optional[int] = None, validate_args: bool = True, ) -> Tensor: r"""Compute the average precision (AP) score for multiclass tasks. The AP score summarizes a precision-recall curve as an weighted mean of precisions at each threshold, with the difference in recall from the previous threshold as weight: .. math:: AP = \sum{n} (R_n - R_{n-1}) P_n where :math:`P_n, R_n` is the respective precision and recall at threshold index :math:`n`. This value is equivalent to the area under the precision-recall curve (AUPRC). Accepts the following input tensors: - ``preds`` (float tensor): ``(N, C, ...)``. Preds should be a tensor containing probabilities or logits for each observation. If preds has values outside [0,1] range we consider the input to be logits and will auto apply softmax per sample. - ``target`` (int tensor): ``(N, ...)``. Target should be a tensor containing ground truth labels, and therefore only contain values in the [0, n_classes-1] range (except if `ignore_index` is specified). Additional dimension ``...`` will be flattened into the batch dimension. The implementation both supports calculating the metric in a non-binned but accurate version and a binned version that is less accurate but more memory efficient. Setting the `thresholds` argument to `None` will activate the non-binned version that uses memory of size :math:`\mathcal{O}(n_{samples})` whereas setting the `thresholds` argument to either an integer, list or a 1d tensor will use a binned version that uses memory of size :math:`\mathcal{O}(n_{thresholds} \times n_{classes})` (constant memory). Args: preds: Tensor with predictions target: Tensor with true labels num_classes: Integer specifying the number of classes average: Defines the reduction that is applied over classes. Should be one of the following: - ``macro``: Calculate score for each class and average them - ``weighted``: calculates score for each class and computes weighted average using their support - ``"none"`` or ``None``: calculates score for each class and applies no reduction thresholds: Can be one of: - If set to `None`, will use a non-binned approach where thresholds are dynamically calculated from all the data. Most accurate but also most memory consuming approach. - If set to an `int` (larger than 1), will use that number of thresholds linearly spaced from 0 to 1 as bins for the calculation. - If set to an `list` of floats, will use the indicated thresholds in the list as bins for the calculation - If set to an 1d `tensor` of floats, will use the indicated thresholds in the tensor as bins for the calculation. ignore_index: Specifies a target value that is ignored and does not contribute to the metric calculation validate_args: bool indicating if input arguments and tensors should be validated for correctness. Set to ``False`` for faster computations. Returns: If `average=None|"none"` then a 1d tensor of shape (n_classes, ) will be returned with AP score per class. If `average="macro"|"weighted"` then a single scalar is returned. Example: >>> from torchmetrics.functional.classification import multiclass_average_precision >>> preds = torch.tensor([[0.75, 0.05, 0.05, 0.05, 0.05], ... [0.05, 0.75, 0.05, 0.05, 0.05], ... [0.05, 0.05, 0.75, 0.05, 0.05], ... [0.05, 0.05, 0.05, 0.75, 0.05]]) >>> target = torch.tensor([0, 1, 3, 2]) >>> multiclass_average_precision(preds, target, num_classes=5, average="macro", thresholds=None) tensor(0.6250) >>> multiclass_average_precision(preds, target, num_classes=5, average=None, thresholds=None) tensor([1.0000, 1.0000, 0.2500, 0.2500, nan]) >>> multiclass_average_precision(preds, target, num_classes=5, average="macro", thresholds=5) tensor(0.5000) >>> multiclass_average_precision(preds, target, num_classes=5, average=None, thresholds=5) tensor([1.0000, 1.0000, 0.2500, 0.2500, -0.0000]) """ if validate_args: _multiclass_average_precision_arg_validation(num_classes, average, thresholds, ignore_index) _multiclass_precision_recall_curve_tensor_validation(preds, target, num_classes, ignore_index) preds, target, thresholds = _multiclass_precision_recall_curve_format( preds, target, num_classes, thresholds, ignore_index ) state = _multiclass_precision_recall_curve_update(preds, target, num_classes, thresholds) return _multiclass_average_precision_compute(state, num_classes, average, thresholds) def _multilabel_average_precision_arg_validation( num_labels: int, average: Optional[Literal["micro", "macro", "weighted", "none"]], thresholds: Optional[Union[int, list[float], Tensor]] = None, ignore_index: Optional[int] = None, ) -> None: _multilabel_precision_recall_curve_arg_validation(num_labels, thresholds, ignore_index) allowed_average = ("micro", "macro", "weighted", "none", None) if average not in allowed_average: raise ValueError(f"Expected argument `average` to be one of {allowed_average} but got {average}") def _multilabel_average_precision_compute( state: Union[Tensor, tuple[Tensor, Tensor]], num_labels: int, average: Optional[Literal["micro", "macro", "weighted", "none"]], thresholds: Optional[Tensor], ignore_index: Optional[int] = None, ) -> Tensor: if average == "micro": if isinstance(state, Tensor) and thresholds is not None: state = state.sum(1) else: preds, target = state[0].flatten(), state[1].flatten() if ignore_index is not None: idx = target == ignore_index preds = preds[~idx] target = target[~idx] state = (preds, target) return _binary_average_precision_compute(state, thresholds) precision, recall, _ = _multilabel_precision_recall_curve_compute(state, num_labels, thresholds, ignore_index) return _reduce_average_precision( precision, recall, average, weights=(state[1] == 1).sum(dim=0).float() if thresholds is None else state[0][:, 1, :].sum(-1), ) def multilabel_average_precision( preds: Tensor, target: Tensor, num_labels: int, average: Optional[Literal["micro", "macro", "weighted", "none"]] = "macro", thresholds: Optional[Union[int, list[float], Tensor]] = None, ignore_index: Optional[int] = None, validate_args: bool = True, ) -> Tensor: r"""Compute the average precision (AP) score for multilabel tasks. The AP score summarizes a precision-recall curve as an weighted mean of precisions at each threshold, with the difference in recall from the previous threshold as weight: .. math:: AP = \sum{n} (R_n - R_{n-1}) P_n where :math:`P_n, R_n` is the respective precision and recall at threshold index :math:`n`. This value is equivalent to the area under the precision-recall curve (AUPRC). Accepts the following input tensors: - ``preds`` (float tensor): ``(N, C, ...)``. Preds should be a tensor containing probabilities or logits for each observation. If preds has values outside [0,1] range we consider the input to be logits and will auto apply sigmoid per element. - ``target`` (int tensor): ``(N, C, ...)``. Target should be a tensor containing ground truth labels, and therefore only contain {0,1} values (except if `ignore_index` is specified). Additional dimension ``...`` will be flattened into the batch dimension. The implementation both supports calculating the metric in a non-binned but accurate version and a binned version that is less accurate but more memory efficient. Setting the `thresholds` argument to `None` will activate the non-binned version that uses memory of size :math:`\mathcal{O}(n_{samples})` whereas setting the `thresholds` argument to either an integer, list or a 1d tensor will use a binned version that uses memory of size :math:`\mathcal{O}(n_{thresholds} \times n_{labels})` (constant memory). Args: preds: Tensor with predictions target: Tensor with true labels num_labels: Integer specifying the number of labels average: Defines the reduction that is applied over labels. Should be one of the following: - ``micro``: Sum score over all labels - ``macro``: Calculate score for each label and average them - ``weighted``: calculates score for each label and computes weighted average using their support - ``"none"`` or ``None``: calculates score for each label and applies no reduction thresholds: Can be one of: - If set to `None`, will use a non-binned approach where thresholds are dynamically calculated from all the data. Most accurate but also most memory consuming approach. - If set to an `int` (larger than 1), will use that number of thresholds linearly spaced from 0 to 1 as bins for the calculation. - If set to an `list` of floats, will use the indicated thresholds in the list as bins for the calculation - If set to an 1d `tensor` of floats, will use the indicated thresholds in the tensor as bins for the calculation. ignore_index: Specifies a target value that is ignored and does not contribute to the metric calculation validate_args: bool indicating if input arguments and tensors should be validated for correctness. Set to ``False`` for faster computations. Returns: If `average=None|"none"` then a 1d tensor of shape (n_classes, ) will be returned with AP score per class. If `average="micro|macro"|"weighted"` then a single scalar is returned. Example: >>> from torchmetrics.functional.classification import multilabel_average_precision >>> preds = torch.tensor([[0.75, 0.05, 0.35], ... [0.45, 0.75, 0.05], ... [0.05, 0.55, 0.75], ... [0.05, 0.65, 0.05]]) >>> target = torch.tensor([[1, 0, 1], ... [0, 0, 0], ... [0, 1, 1], ... [1, 1, 1]]) >>> multilabel_average_precision(preds, target, num_labels=3, average="macro", thresholds=None) tensor(0.7500) >>> multilabel_average_precision(preds, target, num_labels=3, average=None, thresholds=None) tensor([0.7500, 0.5833, 0.9167]) >>> multilabel_average_precision(preds, target, num_labels=3, average="macro", thresholds=5) tensor(0.7778) >>> multilabel_average_precision(preds, target, num_labels=3, average=None, thresholds=5) tensor([0.7500, 0.6667, 0.9167]) """ if validate_args: _multilabel_average_precision_arg_validation(num_labels, average, thresholds, ignore_index) _multilabel_precision_recall_curve_tensor_validation(preds, target, num_labels, ignore_index) preds, target, thresholds = _multilabel_precision_recall_curve_format( preds, target, num_labels, thresholds, ignore_index ) state = _multilabel_precision_recall_curve_update(preds, target, num_labels, thresholds) return _multilabel_average_precision_compute(state, num_labels, average, thresholds, ignore_index) def average_precision( preds: Tensor, target: Tensor, task: Literal["binary", "multiclass", "multilabel"], thresholds: Optional[Union[int, list[float], Tensor]] = None, num_classes: Optional[int] = None, num_labels: Optional[int] = None, average: Optional[Literal["macro", "weighted", "none"]] = "macro", ignore_index: Optional[int] = None, validate_args: bool = True, ) -> Optional[Tensor]: r"""Compute the average precision (AP) score. The AP score summarizes a precision-recall curve as an weighted mean of precisions at each threshold, with the difference in recall from the previous threshold as weight: .. math:: AP = \sum{n} (R_n - R_{n-1}) P_n where :math:`P_n, R_n` is the respective precision and recall at threshold index :math:`n`. This value is equivalent to the area under the precision-recall curve (AUPRC). This function is a simple wrapper to get the task specific versions of this metric, which is done by setting the ``task`` argument to either ``'binary'``, ``'multiclass'`` or ``'multilabel'``. See the documentation of :func:`~torchmetrics.functional.classification.binary_average_precision`, :func:`~torchmetrics.functional.classification.multiclass_average_precision` and :func:`~torchmetrics.functional.classification.multilabel_average_precision` for the specific details of each argument influence and examples. Legacy Example: >>> from torchmetrics.functional.classification import average_precision >>> pred = torch.tensor([0.0, 1.0, 2.0, 3.0]) >>> target = torch.tensor([0, 1, 1, 1]) >>> average_precision(pred, target, task="binary") tensor(1.) >>> pred = torch.tensor([[0.75, 0.05, 0.05, 0.05, 0.05], ... [0.05, 0.75, 0.05, 0.05, 0.05], ... [0.05, 0.05, 0.75, 0.05, 0.05], ... [0.05, 0.05, 0.05, 0.75, 0.05]]) >>> target = torch.tensor([0, 1, 3, 2]) >>> average_precision(pred, target, task="multiclass", num_classes=5, average=None) tensor([1.0000, 1.0000, 0.2500, 0.2500, nan]) """ task = ClassificationTask.from_str(task) if task == ClassificationTask.BINARY: return binary_average_precision(preds, target, thresholds, ignore_index, validate_args) if task == ClassificationTask.MULTICLASS: if not isinstance(num_classes, int): raise ValueError(f"`num_classes` is expected to be `int` but `{type(num_classes)} was passed.`") return multiclass_average_precision( preds, target, num_classes, average, thresholds, ignore_index, validate_args ) if task == ClassificationTask.MULTILABEL: if not isinstance(num_labels, int): raise ValueError(f"`num_labels` is expected to be `int` but `{type(num_labels)} was passed.`") return multilabel_average_precision(preds, target, num_labels, average, thresholds, ignore_index, validate_args) return None