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- """Implementations of musculotendon models.
- Musculotendon models are a critical component of biomechanical models, one that
- differentiates them from pure multibody systems. Musculotendon models produce a
- force dependent on their level of activation, their length, and their
- extension velocity. Length- and extension velocity-dependent force production
- are governed by force-length and force-velocity characteristics.
- These are normalized functions that are dependent on the musculotendon's state
- and are specific to a given musculotendon model.
- """
- from abc import abstractmethod
- from enum import IntEnum, unique
- from sympy.core.numbers import Float, Integer
- from sympy.core.symbol import Symbol, symbols
- from sympy.functions.elementary.miscellaneous import sqrt
- from sympy.functions.elementary.trigonometric import cos, sin
- from sympy.matrices.dense import MutableDenseMatrix as Matrix, diag, eye, zeros
- from sympy.physics.biomechanics.activation import ActivationBase
- from sympy.physics.biomechanics.curve import (
- CharacteristicCurveCollection,
- FiberForceLengthActiveDeGroote2016,
- FiberForceLengthPassiveDeGroote2016,
- FiberForceLengthPassiveInverseDeGroote2016,
- FiberForceVelocityDeGroote2016,
- FiberForceVelocityInverseDeGroote2016,
- TendonForceLengthDeGroote2016,
- TendonForceLengthInverseDeGroote2016,
- )
- from sympy.physics.biomechanics._mixin import _NamedMixin
- from sympy.physics.mechanics.actuator import ForceActuator
- from sympy.physics.vector.functions import dynamicsymbols
- __all__ = [
- 'MusculotendonBase',
- 'MusculotendonDeGroote2016',
- 'MusculotendonFormulation',
- ]
- @unique
- class MusculotendonFormulation(IntEnum):
- """Enumeration of types of musculotendon dynamics formulations.
- Explanation
- ===========
- An (integer) enumeration is used as it allows for clearer selection of the
- different formulations of musculotendon dynamics.
- Members
- =======
- RIGID_TENDON : 0
- A rigid tendon model.
- FIBER_LENGTH_EXPLICIT : 1
- An explicit elastic tendon model with the muscle fiber length (l_M) as
- the state variable.
- TENDON_FORCE_EXPLICIT : 2
- An explicit elastic tendon model with the tendon force (F_T) as the
- state variable.
- FIBER_LENGTH_IMPLICIT : 3
- An implicit elastic tendon model with the muscle fiber length (l_M) as
- the state variable and the muscle fiber velocity as an additional input
- variable.
- TENDON_FORCE_IMPLICIT : 4
- An implicit elastic tendon model with the tendon force (F_T) as the
- state variable as the muscle fiber velocity as an additional input
- variable.
- """
- RIGID_TENDON = 0
- FIBER_LENGTH_EXPLICIT = 1
- TENDON_FORCE_EXPLICIT = 2
- FIBER_LENGTH_IMPLICIT = 3
- TENDON_FORCE_IMPLICIT = 4
- def __str__(self):
- """Returns a string representation of the enumeration value.
- Notes
- =====
- This hard coding is required due to an incompatibility between the
- ``IntEnum`` implementations in Python 3.10 and Python 3.11
- (https://github.com/python/cpython/issues/84247). From Python 3.11
- onwards, the ``__str__`` method uses ``int.__str__``, whereas prior it
- used ``Enum.__str__``. Once Python 3.11 becomes the minimum version
- supported by SymPy, this method override can be removed.
- """
- return str(self.value)
- _DEFAULT_MUSCULOTENDON_FORMULATION = MusculotendonFormulation.RIGID_TENDON
- class MusculotendonBase(ForceActuator, _NamedMixin):
- r"""Abstract base class for all musculotendon classes to inherit from.
- Explanation
- ===========
- A musculotendon generates a contractile force based on its activation,
- length, and shortening velocity. This abstract base class is to be inherited
- by all musculotendon subclasses that implement different characteristic
- musculotendon curves. Characteristic musculotendon curves are required for
- the tendon force-length, passive fiber force-length, active fiber force-
- length, and fiber force-velocity relationships.
- Parameters
- ==========
- name : str
- The name identifier associated with the musculotendon. This name is used
- as a suffix when automatically generated symbols are instantiated. It
- must be a string of nonzero length.
- pathway : PathwayBase
- The pathway that the actuator follows. This must be an instance of a
- concrete subclass of ``PathwayBase``, e.g. ``LinearPathway``.
- activation_dynamics : ActivationBase
- The activation dynamics that will be modeled within the musculotendon.
- This must be an instance of a concrete subclass of ``ActivationBase``,
- e.g. ``FirstOrderActivationDeGroote2016``.
- musculotendon_dynamics : MusculotendonFormulation | int
- The formulation of musculotendon dynamics that should be used
- internally, i.e. rigid or elastic tendon model, the choice of
- musculotendon state etc. This must be a member of the integer
- enumeration ``MusculotendonFormulation`` or an integer that can be cast
- to a member. To use a rigid tendon formulation, set this to
- ``MusculotendonFormulation.RIGID_TENDON`` (or the integer value ``0``,
- which will be cast to the enumeration member). There are four possible
- formulations for an elastic tendon model. To use an explicit formulation
- with the fiber length as the state, set this to
- ``MusculotendonFormulation.FIBER_LENGTH_EXPLICIT`` (or the integer value
- ``1``). To use an explicit formulation with the tendon force as the
- state, set this to ``MusculotendonFormulation.TENDON_FORCE_EXPLICIT``
- (or the integer value ``2``). To use an implicit formulation with the
- fiber length as the state, set this to
- ``MusculotendonFormulation.FIBER_LENGTH_IMPLICIT`` (or the integer value
- ``3``). To use an implicit formulation with the tendon force as the
- state, set this to ``MusculotendonFormulation.TENDON_FORCE_IMPLICIT``
- (or the integer value ``4``). The default is
- ``MusculotendonFormulation.RIGID_TENDON``, which corresponds to a rigid
- tendon formulation.
- tendon_slack_length : Expr | None
- The length of the tendon when the musculotendon is in its unloaded
- state. In a rigid tendon model the tendon length is the tendon slack
- length. In all musculotendon models, tendon slack length is used to
- normalize tendon length to give
- :math:`\tilde{l}^T = \frac{l^T}{l^T_{slack}}`.
- peak_isometric_force : Expr | None
- The maximum force that the muscle fiber can produce when it is
- undergoing an isometric contraction (no lengthening velocity). In all
- musculotendon models, peak isometric force is used to normalized tendon
- and muscle fiber force to give
- :math:`\tilde{F}^T = \frac{F^T}{F^M_{max}}`.
- optimal_fiber_length : Expr | None
- The muscle fiber length at which the muscle fibers produce no passive
- force and their maximum active force. In all musculotendon models,
- optimal fiber length is used to normalize muscle fiber length to give
- :math:`\tilde{l}^M = \frac{l^M}{l^M_{opt}}`.
- maximal_fiber_velocity : Expr | None
- The fiber velocity at which, during muscle fiber shortening, the muscle
- fibers are unable to produce any active force. In all musculotendon
- models, maximal fiber velocity is used to normalize muscle fiber
- extension velocity to give :math:`\tilde{v}^M = \frac{v^M}{v^M_{max}}`.
- optimal_pennation_angle : Expr | None
- The pennation angle when muscle fiber length equals the optimal fiber
- length.
- fiber_damping_coefficient : Expr | None
- The coefficient of damping to be used in the damping element in the
- muscle fiber model.
- with_defaults : bool
- Whether ``with_defaults`` alternate constructors should be used when
- automatically constructing child classes. Default is ``False``.
- """
- def __init__(
- self,
- name,
- pathway,
- activation_dynamics,
- *,
- musculotendon_dynamics=_DEFAULT_MUSCULOTENDON_FORMULATION,
- tendon_slack_length=None,
- peak_isometric_force=None,
- optimal_fiber_length=None,
- maximal_fiber_velocity=None,
- optimal_pennation_angle=None,
- fiber_damping_coefficient=None,
- with_defaults=False,
- ):
- self.name = name
- # Supply a placeholder force to the super initializer, this will be
- # replaced later
- super().__init__(Symbol('F'), pathway)
- # Activation dynamics
- if not isinstance(activation_dynamics, ActivationBase):
- msg = (
- f'Can\'t set attribute `activation_dynamics` to '
- f'{activation_dynamics} as it must be of type '
- f'`ActivationBase`, not {type(activation_dynamics)}.'
- )
- raise TypeError(msg)
- self._activation_dynamics = activation_dynamics
- self._child_objects = (self._activation_dynamics, )
- # Constants
- if tendon_slack_length is not None:
- self._l_T_slack = tendon_slack_length
- else:
- self._l_T_slack = Symbol(f'l_T_slack_{self.name}')
- if peak_isometric_force is not None:
- self._F_M_max = peak_isometric_force
- else:
- self._F_M_max = Symbol(f'F_M_max_{self.name}')
- if optimal_fiber_length is not None:
- self._l_M_opt = optimal_fiber_length
- else:
- self._l_M_opt = Symbol(f'l_M_opt_{self.name}')
- if maximal_fiber_velocity is not None:
- self._v_M_max = maximal_fiber_velocity
- else:
- self._v_M_max = Symbol(f'v_M_max_{self.name}')
- if optimal_pennation_angle is not None:
- self._alpha_opt = optimal_pennation_angle
- else:
- self._alpha_opt = Symbol(f'alpha_opt_{self.name}')
- if fiber_damping_coefficient is not None:
- self._beta = fiber_damping_coefficient
- else:
- self._beta = Symbol(f'beta_{self.name}')
- # Musculotendon dynamics
- self._with_defaults = with_defaults
- if musculotendon_dynamics == MusculotendonFormulation.RIGID_TENDON:
- self._rigid_tendon_musculotendon_dynamics()
- elif musculotendon_dynamics == MusculotendonFormulation.FIBER_LENGTH_EXPLICIT:
- self._fiber_length_explicit_musculotendon_dynamics()
- elif musculotendon_dynamics == MusculotendonFormulation.TENDON_FORCE_EXPLICIT:
- self._tendon_force_explicit_musculotendon_dynamics()
- elif musculotendon_dynamics == MusculotendonFormulation.FIBER_LENGTH_IMPLICIT:
- self._fiber_length_implicit_musculotendon_dynamics()
- elif musculotendon_dynamics == MusculotendonFormulation.TENDON_FORCE_IMPLICIT:
- self._tendon_force_implicit_musculotendon_dynamics()
- else:
- msg = (
- f'Musculotendon dynamics {repr(musculotendon_dynamics)} '
- f'passed to `musculotendon_dynamics` was of type '
- f'{type(musculotendon_dynamics)}, must be '
- f'{MusculotendonFormulation}.'
- )
- raise TypeError(msg)
- self._musculotendon_dynamics = musculotendon_dynamics
- # Must override the placeholder value in `self._force` now that the
- # actual force has been calculated by
- # `self._<MUSCULOTENDON FORMULATION>_musculotendon_dynamics`.
- # Note that `self._force` assumes forces are expansile, musculotendon
- # forces are contractile hence the minus sign preceding `self._F_T`
- # (the tendon force).
- self._force = -self._F_T
- @classmethod
- def with_defaults(
- cls,
- name,
- pathway,
- activation_dynamics,
- *,
- musculotendon_dynamics=_DEFAULT_MUSCULOTENDON_FORMULATION,
- tendon_slack_length=None,
- peak_isometric_force=None,
- optimal_fiber_length=None,
- maximal_fiber_velocity=Float('10.0'),
- optimal_pennation_angle=Float('0.0'),
- fiber_damping_coefficient=Float('0.1'),
- ):
- r"""Recommended constructor that will use the published constants.
- Explanation
- ===========
- Returns a new instance of the musculotendon class using recommended
- values for ``v_M_max``, ``alpha_opt``, and ``beta``. The values are:
- :math:`v^M_{max} = 10`
- :math:`\alpha_{opt} = 0`
- :math:`\beta = \frac{1}{10}`
- The musculotendon curves are also instantiated using the constants from
- the original publication.
- Parameters
- ==========
- name : str
- The name identifier associated with the musculotendon. This name is
- used as a suffix when automatically generated symbols are
- instantiated. It must be a string of nonzero length.
- pathway : PathwayBase
- The pathway that the actuator follows. This must be an instance of a
- concrete subclass of ``PathwayBase``, e.g. ``LinearPathway``.
- activation_dynamics : ActivationBase
- The activation dynamics that will be modeled within the
- musculotendon. This must be an instance of a concrete subclass of
- ``ActivationBase``, e.g. ``FirstOrderActivationDeGroote2016``.
- musculotendon_dynamics : MusculotendonFormulation | int
- The formulation of musculotendon dynamics that should be used
- internally, i.e. rigid or elastic tendon model, the choice of
- musculotendon state etc. This must be a member of the integer
- enumeration ``MusculotendonFormulation`` or an integer that can be
- cast to a member. To use a rigid tendon formulation, set this to
- ``MusculotendonFormulation.RIGID_TENDON`` (or the integer value
- ``0``, which will be cast to the enumeration member). There are four
- possible formulations for an elastic tendon model. To use an
- explicit formulation with the fiber length as the state, set this to
- ``MusculotendonFormulation.FIBER_LENGTH_EXPLICIT`` (or the integer
- value ``1``). To use an explicit formulation with the tendon force
- as the state, set this to
- ``MusculotendonFormulation.TENDON_FORCE_EXPLICIT`` (or the integer
- value ``2``). To use an implicit formulation with the fiber length
- as the state, set this to
- ``MusculotendonFormulation.FIBER_LENGTH_IMPLICIT`` (or the integer
- value ``3``). To use an implicit formulation with the tendon force
- as the state, set this to
- ``MusculotendonFormulation.TENDON_FORCE_IMPLICIT`` (or the integer
- value ``4``). The default is
- ``MusculotendonFormulation.RIGID_TENDON``, which corresponds to a
- rigid tendon formulation.
- tendon_slack_length : Expr | None
- The length of the tendon when the musculotendon is in its unloaded
- state. In a rigid tendon model the tendon length is the tendon slack
- length. In all musculotendon models, tendon slack length is used to
- normalize tendon length to give
- :math:`\tilde{l}^T = \frac{l^T}{l^T_{slack}}`.
- peak_isometric_force : Expr | None
- The maximum force that the muscle fiber can produce when it is
- undergoing an isometric contraction (no lengthening velocity). In
- all musculotendon models, peak isometric force is used to normalized
- tendon and muscle fiber force to give
- :math:`\tilde{F}^T = \frac{F^T}{F^M_{max}}`.
- optimal_fiber_length : Expr | None
- The muscle fiber length at which the muscle fibers produce no
- passive force and their maximum active force. In all musculotendon
- models, optimal fiber length is used to normalize muscle fiber
- length to give :math:`\tilde{l}^M = \frac{l^M}{l^M_{opt}}`.
- maximal_fiber_velocity : Expr | None
- The fiber velocity at which, during muscle fiber shortening, the
- muscle fibers are unable to produce any active force. In all
- musculotendon models, maximal fiber velocity is used to normalize
- muscle fiber extension velocity to give
- :math:`\tilde{v}^M = \frac{v^M}{v^M_{max}}`.
- optimal_pennation_angle : Expr | None
- The pennation angle when muscle fiber length equals the optimal
- fiber length.
- fiber_damping_coefficient : Expr | None
- The coefficient of damping to be used in the damping element in the
- muscle fiber model.
- """
- return cls(
- name,
- pathway,
- activation_dynamics=activation_dynamics,
- musculotendon_dynamics=musculotendon_dynamics,
- tendon_slack_length=tendon_slack_length,
- peak_isometric_force=peak_isometric_force,
- optimal_fiber_length=optimal_fiber_length,
- maximal_fiber_velocity=maximal_fiber_velocity,
- optimal_pennation_angle=optimal_pennation_angle,
- fiber_damping_coefficient=fiber_damping_coefficient,
- with_defaults=True,
- )
- @abstractmethod
- def curves(cls):
- """Return a ``CharacteristicCurveCollection`` of the curves related to
- the specific model."""
- pass
- @property
- def tendon_slack_length(self):
- r"""Symbol or value corresponding to the tendon slack length constant.
- Explanation
- ===========
- The length of the tendon when the musculotendon is in its unloaded
- state. In a rigid tendon model the tendon length is the tendon slack
- length. In all musculotendon models, tendon slack length is used to
- normalize tendon length to give
- :math:`\tilde{l}^T = \frac{l^T}{l^T_{slack}}`.
- The alias ``l_T_slack`` can also be used to access the same attribute.
- """
- return self._l_T_slack
- @property
- def l_T_slack(self):
- r"""Symbol or value corresponding to the tendon slack length constant.
- Explanation
- ===========
- The length of the tendon when the musculotendon is in its unloaded
- state. In a rigid tendon model the tendon length is the tendon slack
- length. In all musculotendon models, tendon slack length is used to
- normalize tendon length to give
- :math:`\tilde{l}^T = \frac{l^T}{l^T_{slack}}`.
- The alias ``tendon_slack_length`` can also be used to access the same
- attribute.
- """
- return self._l_T_slack
- @property
- def peak_isometric_force(self):
- r"""Symbol or value corresponding to the peak isometric force constant.
- Explanation
- ===========
- The maximum force that the muscle fiber can produce when it is
- undergoing an isometric contraction (no lengthening velocity). In all
- musculotendon models, peak isometric force is used to normalized tendon
- and muscle fiber force to give
- :math:`\tilde{F}^T = \frac{F^T}{F^M_{max}}`.
- The alias ``F_M_max`` can also be used to access the same attribute.
- """
- return self._F_M_max
- @property
- def F_M_max(self):
- r"""Symbol or value corresponding to the peak isometric force constant.
- Explanation
- ===========
- The maximum force that the muscle fiber can produce when it is
- undergoing an isometric contraction (no lengthening velocity). In all
- musculotendon models, peak isometric force is used to normalized tendon
- and muscle fiber force to give
- :math:`\tilde{F}^T = \frac{F^T}{F^M_{max}}`.
- The alias ``peak_isometric_force`` can also be used to access the same
- attribute.
- """
- return self._F_M_max
- @property
- def optimal_fiber_length(self):
- r"""Symbol or value corresponding to the optimal fiber length constant.
- Explanation
- ===========
- The muscle fiber length at which the muscle fibers produce no passive
- force and their maximum active force. In all musculotendon models,
- optimal fiber length is used to normalize muscle fiber length to give
- :math:`\tilde{l}^M = \frac{l^M}{l^M_{opt}}`.
- The alias ``l_M_opt`` can also be used to access the same attribute.
- """
- return self._l_M_opt
- @property
- def l_M_opt(self):
- r"""Symbol or value corresponding to the optimal fiber length constant.
- Explanation
- ===========
- The muscle fiber length at which the muscle fibers produce no passive
- force and their maximum active force. In all musculotendon models,
- optimal fiber length is used to normalize muscle fiber length to give
- :math:`\tilde{l}^M = \frac{l^M}{l^M_{opt}}`.
- The alias ``optimal_fiber_length`` can also be used to access the same
- attribute.
- """
- return self._l_M_opt
- @property
- def maximal_fiber_velocity(self):
- r"""Symbol or value corresponding to the maximal fiber velocity constant.
- Explanation
- ===========
- The fiber velocity at which, during muscle fiber shortening, the muscle
- fibers are unable to produce any active force. In all musculotendon
- models, maximal fiber velocity is used to normalize muscle fiber
- extension velocity to give :math:`\tilde{v}^M = \frac{v^M}{v^M_{max}}`.
- The alias ``v_M_max`` can also be used to access the same attribute.
- """
- return self._v_M_max
- @property
- def v_M_max(self):
- r"""Symbol or value corresponding to the maximal fiber velocity constant.
- Explanation
- ===========
- The fiber velocity at which, during muscle fiber shortening, the muscle
- fibers are unable to produce any active force. In all musculotendon
- models, maximal fiber velocity is used to normalize muscle fiber
- extension velocity to give :math:`\tilde{v}^M = \frac{v^M}{v^M_{max}}`.
- The alias ``maximal_fiber_velocity`` can also be used to access the same
- attribute.
- """
- return self._v_M_max
- @property
- def optimal_pennation_angle(self):
- """Symbol or value corresponding to the optimal pennation angle
- constant.
- Explanation
- ===========
- The pennation angle when muscle fiber length equals the optimal fiber
- length.
- The alias ``alpha_opt`` can also be used to access the same attribute.
- """
- return self._alpha_opt
- @property
- def alpha_opt(self):
- """Symbol or value corresponding to the optimal pennation angle
- constant.
- Explanation
- ===========
- The pennation angle when muscle fiber length equals the optimal fiber
- length.
- The alias ``optimal_pennation_angle`` can also be used to access the
- same attribute.
- """
- return self._alpha_opt
- @property
- def fiber_damping_coefficient(self):
- """Symbol or value corresponding to the fiber damping coefficient
- constant.
- Explanation
- ===========
- The coefficient of damping to be used in the damping element in the
- muscle fiber model.
- The alias ``beta`` can also be used to access the same attribute.
- """
- return self._beta
- @property
- def beta(self):
- """Symbol or value corresponding to the fiber damping coefficient
- constant.
- Explanation
- ===========
- The coefficient of damping to be used in the damping element in the
- muscle fiber model.
- The alias ``fiber_damping_coefficient`` can also be used to access the
- same attribute.
- """
- return self._beta
- @property
- def activation_dynamics(self):
- """Activation dynamics model governing this musculotendon's activation.
- Explanation
- ===========
- Returns the instance of a subclass of ``ActivationBase`` that governs
- the relationship between excitation and activation that is used to
- represent the activation dynamics of this musculotendon.
- """
- return self._activation_dynamics
- @property
- def excitation(self):
- """Dynamic symbol representing excitation.
- Explanation
- ===========
- The alias ``e`` can also be used to access the same attribute.
- """
- return self._activation_dynamics._e
- @property
- def e(self):
- """Dynamic symbol representing excitation.
- Explanation
- ===========
- The alias ``excitation`` can also be used to access the same attribute.
- """
- return self._activation_dynamics._e
- @property
- def activation(self):
- """Dynamic symbol representing activation.
- Explanation
- ===========
- The alias ``a`` can also be used to access the same attribute.
- """
- return self._activation_dynamics._a
- @property
- def a(self):
- """Dynamic symbol representing activation.
- Explanation
- ===========
- The alias ``activation`` can also be used to access the same attribute.
- """
- return self._activation_dynamics._a
- @property
- def musculotendon_dynamics(self):
- """The choice of rigid or type of elastic tendon musculotendon dynamics.
- Explanation
- ===========
- The formulation of musculotendon dynamics that should be used
- internally, i.e. rigid or elastic tendon model, the choice of
- musculotendon state etc. This must be a member of the integer
- enumeration ``MusculotendonFormulation`` or an integer that can be cast
- to a member. To use a rigid tendon formulation, set this to
- ``MusculotendonFormulation.RIGID_TENDON`` (or the integer value ``0``,
- which will be cast to the enumeration member). There are four possible
- formulations for an elastic tendon model. To use an explicit formulation
- with the fiber length as the state, set this to
- ``MusculotendonFormulation.FIBER_LENGTH_EXPLICIT`` (or the integer value
- ``1``). To use an explicit formulation with the tendon force as the
- state, set this to ``MusculotendonFormulation.TENDON_FORCE_EXPLICIT``
- (or the integer value ``2``). To use an implicit formulation with the
- fiber length as the state, set this to
- ``MusculotendonFormulation.FIBER_LENGTH_IMPLICIT`` (or the integer value
- ``3``). To use an implicit formulation with the tendon force as the
- state, set this to ``MusculotendonFormulation.TENDON_FORCE_IMPLICIT``
- (or the integer value ``4``). The default is
- ``MusculotendonFormulation.RIGID_TENDON``, which corresponds to a rigid
- tendon formulation.
- """
- return self._musculotendon_dynamics
- def _rigid_tendon_musculotendon_dynamics(self):
- """Rigid tendon musculotendon."""
- self._l_MT = self.pathway.length
- self._v_MT = self.pathway.extension_velocity
- self._l_T = self._l_T_slack
- self._l_T_tilde = Integer(1)
- self._l_M = sqrt((self._l_MT - self._l_T)**2 + (self._l_M_opt*sin(self._alpha_opt))**2)
- self._l_M_tilde = self._l_M/self._l_M_opt
- self._v_M = self._v_MT*(self._l_MT - self._l_T_slack)/self._l_M
- self._v_M_tilde = self._v_M/self._v_M_max
- if self._with_defaults:
- self._fl_T = self.curves.tendon_force_length.with_defaults(self._l_T_tilde)
- self._fl_M_pas = self.curves.fiber_force_length_passive.with_defaults(self._l_M_tilde)
- self._fl_M_act = self.curves.fiber_force_length_active.with_defaults(self._l_M_tilde)
- self._fv_M = self.curves.fiber_force_velocity.with_defaults(self._v_M_tilde)
- else:
- fl_T_constants = symbols(f'c_0:4_fl_T_{self.name}')
- self._fl_T = self.curves.tendon_force_length(self._l_T_tilde, *fl_T_constants)
- fl_M_pas_constants = symbols(f'c_0:2_fl_M_pas_{self.name}')
- self._fl_M_pas = self.curves.fiber_force_length_passive(self._l_M_tilde, *fl_M_pas_constants)
- fl_M_act_constants = symbols(f'c_0:12_fl_M_act_{self.name}')
- self._fl_M_act = self.curves.fiber_force_length_active(self._l_M_tilde, *fl_M_act_constants)
- fv_M_constants = symbols(f'c_0:4_fv_M_{self.name}')
- self._fv_M = self.curves.fiber_force_velocity(self._v_M_tilde, *fv_M_constants)
- self._F_M_tilde = self.a*self._fl_M_act*self._fv_M + self._fl_M_pas + self._beta*self._v_M_tilde
- self._F_T_tilde = self._F_M_tilde
- self._F_M = self._F_M_tilde*self._F_M_max
- self._cos_alpha = cos(self._alpha_opt)
- self._F_T = self._F_M*self._cos_alpha
- # Containers
- self._state_vars = zeros(0, 1)
- self._input_vars = zeros(0, 1)
- self._state_eqns = zeros(0, 1)
- self._curve_constants = Matrix(
- fl_T_constants
- + fl_M_pas_constants
- + fl_M_act_constants
- + fv_M_constants
- ) if not self._with_defaults else zeros(0, 1)
- def _fiber_length_explicit_musculotendon_dynamics(self):
- """Elastic tendon musculotendon using `l_M_tilde` as a state."""
- self._l_M_tilde = dynamicsymbols(f'l_M_tilde_{self.name}')
- self._l_MT = self.pathway.length
- self._v_MT = self.pathway.extension_velocity
- self._l_M = self._l_M_tilde*self._l_M_opt
- self._l_T = self._l_MT - sqrt(self._l_M**2 - (self._l_M_opt*sin(self._alpha_opt))**2)
- self._l_T_tilde = self._l_T/self._l_T_slack
- self._cos_alpha = (self._l_MT - self._l_T)/self._l_M
- if self._with_defaults:
- self._fl_T = self.curves.tendon_force_length.with_defaults(self._l_T_tilde)
- self._fl_M_pas = self.curves.fiber_force_length_passive.with_defaults(self._l_M_tilde)
- self._fl_M_act = self.curves.fiber_force_length_active.with_defaults(self._l_M_tilde)
- else:
- fl_T_constants = symbols(f'c_0:4_fl_T_{self.name}')
- self._fl_T = self.curves.tendon_force_length(self._l_T_tilde, *fl_T_constants)
- fl_M_pas_constants = symbols(f'c_0:2_fl_M_pas_{self.name}')
- self._fl_M_pas = self.curves.fiber_force_length_passive(self._l_M_tilde, *fl_M_pas_constants)
- fl_M_act_constants = symbols(f'c_0:12_fl_M_act_{self.name}')
- self._fl_M_act = self.curves.fiber_force_length_active(self._l_M_tilde, *fl_M_act_constants)
- self._F_T_tilde = self._fl_T
- self._F_T = self._F_T_tilde*self._F_M_max
- self._F_M = self._F_T/self._cos_alpha
- self._F_M_tilde = self._F_M/self._F_M_max
- self._fv_M = (self._F_M_tilde - self._fl_M_pas)/(self.a*self._fl_M_act)
- if self._with_defaults:
- self._v_M_tilde = self.curves.fiber_force_velocity_inverse.with_defaults(self._fv_M)
- else:
- fv_M_constants = symbols(f'c_0:4_fv_M_{self.name}')
- self._v_M_tilde = self.curves.fiber_force_velocity_inverse(self._fv_M, *fv_M_constants)
- self._dl_M_tilde_dt = (self._v_M_max/self._l_M_opt)*self._v_M_tilde
- self._state_vars = Matrix([self._l_M_tilde])
- self._input_vars = zeros(0, 1)
- self._state_eqns = Matrix([self._dl_M_tilde_dt])
- self._curve_constants = Matrix(
- fl_T_constants
- + fl_M_pas_constants
- + fl_M_act_constants
- + fv_M_constants
- ) if not self._with_defaults else zeros(0, 1)
- def _tendon_force_explicit_musculotendon_dynamics(self):
- """Elastic tendon musculotendon using `F_T_tilde` as a state."""
- self._F_T_tilde = dynamicsymbols(f'F_T_tilde_{self.name}')
- self._l_MT = self.pathway.length
- self._v_MT = self.pathway.extension_velocity
- self._fl_T = self._F_T_tilde
- if self._with_defaults:
- self._fl_T_inv = self.curves.tendon_force_length_inverse.with_defaults(self._fl_T)
- else:
- fl_T_constants = symbols(f'c_0:4_fl_T_{self.name}')
- self._fl_T_inv = self.curves.tendon_force_length_inverse(self._fl_T, *fl_T_constants)
- self._l_T_tilde = self._fl_T_inv
- self._l_T = self._l_T_tilde*self._l_T_slack
- self._l_M = sqrt((self._l_MT - self._l_T)**2 + (self._l_M_opt*sin(self._alpha_opt))**2)
- self._l_M_tilde = self._l_M/self._l_M_opt
- if self._with_defaults:
- self._fl_M_pas = self.curves.fiber_force_length_passive.with_defaults(self._l_M_tilde)
- self._fl_M_act = self.curves.fiber_force_length_active.with_defaults(self._l_M_tilde)
- else:
- fl_M_pas_constants = symbols(f'c_0:2_fl_M_pas_{self.name}')
- self._fl_M_pas = self.curves.fiber_force_length_passive(self._l_M_tilde, *fl_M_pas_constants)
- fl_M_act_constants = symbols(f'c_0:12_fl_M_act_{self.name}')
- self._fl_M_act = self.curves.fiber_force_length_active(self._l_M_tilde, *fl_M_act_constants)
- self._cos_alpha = (self._l_MT - self._l_T)/self._l_M
- self._F_T = self._F_T_tilde*self._F_M_max
- self._F_M = self._F_T/self._cos_alpha
- self._F_M_tilde = self._F_M/self._F_M_max
- self._fv_M = (self._F_M_tilde - self._fl_M_pas)/(self.a*self._fl_M_act)
- if self._with_defaults:
- self._fv_M_inv = self.curves.fiber_force_velocity_inverse.with_defaults(self._fv_M)
- else:
- fv_M_constants = symbols(f'c_0:4_fv_M_{self.name}')
- self._fv_M_inv = self.curves.fiber_force_velocity_inverse(self._fv_M, *fv_M_constants)
- self._v_M_tilde = self._fv_M_inv
- self._v_M = self._v_M_tilde*self._v_M_max
- self._v_T = self._v_MT - (self._v_M/self._cos_alpha)
- self._v_T_tilde = self._v_T/self._l_T_slack
- if self._with_defaults:
- self._fl_T = self.curves.tendon_force_length.with_defaults(self._l_T_tilde)
- else:
- self._fl_T = self.curves.tendon_force_length(self._l_T_tilde, *fl_T_constants)
- self._dF_T_tilde_dt = self._fl_T.diff(dynamicsymbols._t).subs({self._l_T_tilde.diff(dynamicsymbols._t): self._v_T_tilde})
- self._state_vars = Matrix([self._F_T_tilde])
- self._input_vars = zeros(0, 1)
- self._state_eqns = Matrix([self._dF_T_tilde_dt])
- self._curve_constants = Matrix(
- fl_T_constants
- + fl_M_pas_constants
- + fl_M_act_constants
- + fv_M_constants
- ) if not self._with_defaults else zeros(0, 1)
- def _fiber_length_implicit_musculotendon_dynamics(self):
- raise NotImplementedError
- def _tendon_force_implicit_musculotendon_dynamics(self):
- raise NotImplementedError
- @property
- def state_vars(self):
- """Ordered column matrix of functions of time that represent the state
- variables.
- Explanation
- ===========
- The alias ``x`` can also be used to access the same attribute.
- """
- state_vars = [self._state_vars]
- for child in self._child_objects:
- state_vars.append(child.state_vars)
- return Matrix.vstack(*state_vars)
- @property
- def x(self):
- """Ordered column matrix of functions of time that represent the state
- variables.
- Explanation
- ===========
- The alias ``state_vars`` can also be used to access the same attribute.
- """
- state_vars = [self._state_vars]
- for child in self._child_objects:
- state_vars.append(child.state_vars)
- return Matrix.vstack(*state_vars)
- @property
- def input_vars(self):
- """Ordered column matrix of functions of time that represent the input
- variables.
- Explanation
- ===========
- The alias ``r`` can also be used to access the same attribute.
- """
- input_vars = [self._input_vars]
- for child in self._child_objects:
- input_vars.append(child.input_vars)
- return Matrix.vstack(*input_vars)
- @property
- def r(self):
- """Ordered column matrix of functions of time that represent the input
- variables.
- Explanation
- ===========
- The alias ``input_vars`` can also be used to access the same attribute.
- """
- input_vars = [self._input_vars]
- for child in self._child_objects:
- input_vars.append(child.input_vars)
- return Matrix.vstack(*input_vars)
- @property
- def constants(self):
- """Ordered column matrix of non-time varying symbols present in ``M``
- and ``F``.
- Explanation
- ===========
- Only symbolic constants are returned. If a numeric type (e.g. ``Float``)
- has been used instead of ``Symbol`` for a constant then that attribute
- will not be included in the matrix returned by this property. This is
- because the primary use of this property attribute is to provide an
- ordered sequence of the still-free symbols that require numeric values
- during code generation.
- The alias ``p`` can also be used to access the same attribute.
- """
- musculotendon_constants = [
- self._l_T_slack,
- self._F_M_max,
- self._l_M_opt,
- self._v_M_max,
- self._alpha_opt,
- self._beta,
- ]
- musculotendon_constants = [
- c for c in musculotendon_constants if not c.is_number
- ]
- constants = [
- Matrix(musculotendon_constants)
- if musculotendon_constants
- else zeros(0, 1)
- ]
- for child in self._child_objects:
- constants.append(child.constants)
- constants.append(self._curve_constants)
- return Matrix.vstack(*constants)
- @property
- def p(self):
- """Ordered column matrix of non-time varying symbols present in ``M``
- and ``F``.
- Explanation
- ===========
- Only symbolic constants are returned. If a numeric type (e.g. ``Float``)
- has been used instead of ``Symbol`` for a constant then that attribute
- will not be included in the matrix returned by this property. This is
- because the primary use of this property attribute is to provide an
- ordered sequence of the still-free symbols that require numeric values
- during code generation.
- The alias ``constants`` can also be used to access the same attribute.
- """
- musculotendon_constants = [
- self._l_T_slack,
- self._F_M_max,
- self._l_M_opt,
- self._v_M_max,
- self._alpha_opt,
- self._beta,
- ]
- musculotendon_constants = [
- c for c in musculotendon_constants if not c.is_number
- ]
- constants = [
- Matrix(musculotendon_constants)
- if musculotendon_constants
- else zeros(0, 1)
- ]
- for child in self._child_objects:
- constants.append(child.constants)
- constants.append(self._curve_constants)
- return Matrix.vstack(*constants)
- @property
- def M(self):
- """Ordered square matrix of coefficients on the LHS of ``M x' = F``.
- Explanation
- ===========
- The square matrix that forms part of the LHS of the linear system of
- ordinary differential equations governing the activation dynamics:
- ``M(x, r, t, p) x' = F(x, r, t, p)``.
- As zeroth-order activation dynamics have no state variables, this
- linear system has dimension 0 and therefore ``M`` is an empty square
- ``Matrix`` with shape (0, 0).
- """
- M = [eye(len(self._state_vars))]
- for child in self._child_objects:
- M.append(child.M)
- return diag(*M)
- @property
- def F(self):
- """Ordered column matrix of equations on the RHS of ``M x' = F``.
- Explanation
- ===========
- The column matrix that forms the RHS of the linear system of ordinary
- differential equations governing the activation dynamics:
- ``M(x, r, t, p) x' = F(x, r, t, p)``.
- As zeroth-order activation dynamics have no state variables, this
- linear system has dimension 0 and therefore ``F`` is an empty column
- ``Matrix`` with shape (0, 1).
- """
- F = [self._state_eqns]
- for child in self._child_objects:
- F.append(child.F)
- return Matrix.vstack(*F)
- def rhs(self):
- """Ordered column matrix of equations for the solution of ``M x' = F``.
- Explanation
- ===========
- The solution to the linear system of ordinary differential equations
- governing the activation dynamics:
- ``M(x, r, t, p) x' = F(x, r, t, p)``.
- As zeroth-order activation dynamics have no state variables, this
- linear has dimension 0 and therefore this method returns an empty
- column ``Matrix`` with shape (0, 1).
- """
- is_explicit = (
- MusculotendonFormulation.FIBER_LENGTH_EXPLICIT,
- MusculotendonFormulation.TENDON_FORCE_EXPLICIT,
- )
- if self.musculotendon_dynamics is MusculotendonFormulation.RIGID_TENDON:
- child_rhs = [child.rhs() for child in self._child_objects]
- return Matrix.vstack(*child_rhs)
- elif self.musculotendon_dynamics in is_explicit:
- rhs = self._state_eqns
- child_rhs = [child.rhs() for child in self._child_objects]
- return Matrix.vstack(rhs, *child_rhs)
- return self.M.solve(self.F)
- def __repr__(self):
- """Returns a string representation to reinstantiate the model."""
- return (
- f'{self.__class__.__name__}({self.name!r}, '
- f'pathway={self.pathway!r}, '
- f'activation_dynamics={self.activation_dynamics!r}, '
- f'musculotendon_dynamics={self.musculotendon_dynamics}, '
- f'tendon_slack_length={self._l_T_slack!r}, '
- f'peak_isometric_force={self._F_M_max!r}, '
- f'optimal_fiber_length={self._l_M_opt!r}, '
- f'maximal_fiber_velocity={self._v_M_max!r}, '
- f'optimal_pennation_angle={self._alpha_opt!r}, '
- f'fiber_damping_coefficient={self._beta!r})'
- )
- def __str__(self):
- """Returns a string representation of the expression for musculotendon
- force."""
- return str(self.force)
- class MusculotendonDeGroote2016(MusculotendonBase):
- r"""Musculotendon model using the curves of De Groote et al., 2016 [1]_.
- Examples
- ========
- This class models the musculotendon actuator parametrized by the
- characteristic curves described in De Groote et al., 2016 [1]_. Like all
- musculotendon models in SymPy's biomechanics module, it requires a pathway
- to define its line of action. We'll begin by creating a simple
- ``LinearPathway`` between two points that our musculotendon will follow.
- We'll create a point ``O`` to represent the musculotendon's origin and
- another ``I`` to represent its insertion.
- >>> from sympy import symbols
- >>> from sympy.physics.mechanics import (LinearPathway, Point,
- ... ReferenceFrame, dynamicsymbols)
- >>> N = ReferenceFrame('N')
- >>> O, I = O, P = symbols('O, I', cls=Point)
- >>> q, u = dynamicsymbols('q, u', real=True)
- >>> I.set_pos(O, q*N.x)
- >>> O.set_vel(N, 0)
- >>> I.set_vel(N, u*N.x)
- >>> pathway = LinearPathway(O, I)
- >>> pathway.attachments
- (O, I)
- >>> pathway.length
- Abs(q(t))
- >>> pathway.extension_velocity
- sign(q(t))*Derivative(q(t), t)
- A musculotendon also takes an instance of an activation dynamics model as
- this will be used to provide symbols for the activation in the formulation
- of the musculotendon dynamics. We'll use an instance of
- ``FirstOrderActivationDeGroote2016`` to represent first-order activation
- dynamics. Note that a single name argument needs to be provided as SymPy
- will use this as a suffix.
- >>> from sympy.physics.biomechanics import FirstOrderActivationDeGroote2016
- >>> activation = FirstOrderActivationDeGroote2016('muscle')
- >>> activation.x
- Matrix([[a_muscle(t)]])
- >>> activation.r
- Matrix([[e_muscle(t)]])
- >>> activation.p
- Matrix([
- [tau_a_muscle],
- [tau_d_muscle],
- [ b_muscle]])
- >>> activation.rhs()
- Matrix([[((1/2 - tanh(b_muscle*(-a_muscle(t) + e_muscle(t)))/2)*(3*...]])
- The musculotendon class requires symbols or values to be passed to represent
- the constants in the musculotendon dynamics. We'll use SymPy's ``symbols``
- function to create symbols for the maximum isometric force ``F_M_max``,
- optimal fiber length ``l_M_opt``, tendon slack length ``l_T_slack``, maximum
- fiber velocity ``v_M_max``, optimal pennation angle ``alpha_opt, and fiber
- damping coefficient ``beta``.
- >>> F_M_max = symbols('F_M_max', real=True)
- >>> l_M_opt = symbols('l_M_opt', real=True)
- >>> l_T_slack = symbols('l_T_slack', real=True)
- >>> v_M_max = symbols('v_M_max', real=True)
- >>> alpha_opt = symbols('alpha_opt', real=True)
- >>> beta = symbols('beta', real=True)
- We can then import the class ``MusculotendonDeGroote2016`` from the
- biomechanics module and create an instance by passing in the various objects
- we have previously instantiated. By default, a musculotendon model with
- rigid tendon musculotendon dynamics will be created.
- >>> from sympy.physics.biomechanics import MusculotendonDeGroote2016
- >>> rigid_tendon_muscle = MusculotendonDeGroote2016(
- ... 'muscle',
- ... pathway,
- ... activation,
- ... tendon_slack_length=l_T_slack,
- ... peak_isometric_force=F_M_max,
- ... optimal_fiber_length=l_M_opt,
- ... maximal_fiber_velocity=v_M_max,
- ... optimal_pennation_angle=alpha_opt,
- ... fiber_damping_coefficient=beta,
- ... )
- We can inspect the various properties of the musculotendon, including
- getting the symbolic expression describing the force it produces using its
- ``force`` attribute.
- >>> rigid_tendon_muscle.force
- -F_M_max*(beta*(-l_T_slack + Abs(q(t)))*sign(q(t))*Derivative(q(t), t)...
- When we created the musculotendon object, we passed in an instance of an
- activation dynamics object that governs the activation within the
- musculotendon. SymPy makes a design choice here that the activation dynamics
- instance will be treated as a child object of the musculotendon dynamics.
- Therefore, if we want to inspect the state and input variables associated
- with the musculotendon model, we will also be returned the state and input
- variables associated with the child object, or the activation dynamics in
- this case. As the musculotendon model that we created here uses rigid tendon
- dynamics, no additional states or inputs relating to the musculotendon are
- introduces. Consequently, the model has a single state associated with it,
- the activation, and a single input associated with it, the excitation. The
- states and inputs can be inspected using the ``x`` and ``r`` attributes
- respectively. Note that both ``x`` and ``r`` have the alias attributes of
- ``state_vars`` and ``input_vars``.
- >>> rigid_tendon_muscle.x
- Matrix([[a_muscle(t)]])
- >>> rigid_tendon_muscle.r
- Matrix([[e_muscle(t)]])
- To see which constants are symbolic in the musculotendon model, we can use
- the ``p`` or ``constants`` attribute. This returns a ``Matrix`` populated
- by the constants that are represented by a ``Symbol`` rather than a numeric
- value.
- >>> rigid_tendon_muscle.p
- Matrix([
- [ l_T_slack],
- [ F_M_max],
- [ l_M_opt],
- [ v_M_max],
- [ alpha_opt],
- [ beta],
- [ tau_a_muscle],
- [ tau_d_muscle],
- [ b_muscle],
- [ c_0_fl_T_muscle],
- [ c_1_fl_T_muscle],
- [ c_2_fl_T_muscle],
- [ c_3_fl_T_muscle],
- [ c_0_fl_M_pas_muscle],
- [ c_1_fl_M_pas_muscle],
- [ c_0_fl_M_act_muscle],
- [ c_1_fl_M_act_muscle],
- [ c_2_fl_M_act_muscle],
- [ c_3_fl_M_act_muscle],
- [ c_4_fl_M_act_muscle],
- [ c_5_fl_M_act_muscle],
- [ c_6_fl_M_act_muscle],
- [ c_7_fl_M_act_muscle],
- [ c_8_fl_M_act_muscle],
- [ c_9_fl_M_act_muscle],
- [c_10_fl_M_act_muscle],
- [c_11_fl_M_act_muscle],
- [ c_0_fv_M_muscle],
- [ c_1_fv_M_muscle],
- [ c_2_fv_M_muscle],
- [ c_3_fv_M_muscle]])
- Finally, we can call the ``rhs`` method to return a ``Matrix`` that
- contains as its elements the righthand side of the ordinary differential
- equations corresponding to each of the musculotendon's states. Like the
- method with the same name on the ``Method`` classes in SymPy's mechanics
- module, this returns a column vector where the number of rows corresponds to
- the number of states. For our example here, we have a single state, the
- dynamic symbol ``a_muscle(t)``, so the returned value is a 1-by-1
- ``Matrix``.
- >>> rigid_tendon_muscle.rhs()
- Matrix([[((1/2 - tanh(b_muscle*(-a_muscle(t) + e_muscle(t)))/2)*(3*...]])
- The musculotendon class supports elastic tendon musculotendon models in
- addition to rigid tendon ones. You can choose to either use the fiber length
- or tendon force as an additional state. You can also specify whether an
- explicit or implicit formulation should be used. To select a formulation,
- pass a member of the ``MusculotendonFormulation`` enumeration to the
- ``musculotendon_dynamics`` parameter when calling the constructor. This
- enumeration is an ``IntEnum``, so you can also pass an integer, however it
- is recommended to use the enumeration as it is clearer which formulation you
- are actually selecting. Below, we'll use the ``FIBER_LENGTH_EXPLICIT``
- member to create a musculotendon with an elastic tendon that will use the
- (normalized) muscle fiber length as an additional state and will produce
- the governing ordinary differential equation in explicit form.
- >>> from sympy.physics.biomechanics import MusculotendonFormulation
- >>> elastic_tendon_muscle = MusculotendonDeGroote2016(
- ... 'muscle',
- ... pathway,
- ... activation,
- ... musculotendon_dynamics=MusculotendonFormulation.FIBER_LENGTH_EXPLICIT,
- ... tendon_slack_length=l_T_slack,
- ... peak_isometric_force=F_M_max,
- ... optimal_fiber_length=l_M_opt,
- ... maximal_fiber_velocity=v_M_max,
- ... optimal_pennation_angle=alpha_opt,
- ... fiber_damping_coefficient=beta,
- ... )
- >>> elastic_tendon_muscle.force
- -F_M_max*TendonForceLengthDeGroote2016((-sqrt(l_M_opt**2*...
- >>> elastic_tendon_muscle.x
- Matrix([
- [l_M_tilde_muscle(t)],
- [ a_muscle(t)]])
- >>> elastic_tendon_muscle.r
- Matrix([[e_muscle(t)]])
- >>> elastic_tendon_muscle.p
- Matrix([
- [ l_T_slack],
- [ F_M_max],
- [ l_M_opt],
- [ v_M_max],
- [ alpha_opt],
- [ beta],
- [ tau_a_muscle],
- [ tau_d_muscle],
- [ b_muscle],
- [ c_0_fl_T_muscle],
- [ c_1_fl_T_muscle],
- [ c_2_fl_T_muscle],
- [ c_3_fl_T_muscle],
- [ c_0_fl_M_pas_muscle],
- [ c_1_fl_M_pas_muscle],
- [ c_0_fl_M_act_muscle],
- [ c_1_fl_M_act_muscle],
- [ c_2_fl_M_act_muscle],
- [ c_3_fl_M_act_muscle],
- [ c_4_fl_M_act_muscle],
- [ c_5_fl_M_act_muscle],
- [ c_6_fl_M_act_muscle],
- [ c_7_fl_M_act_muscle],
- [ c_8_fl_M_act_muscle],
- [ c_9_fl_M_act_muscle],
- [c_10_fl_M_act_muscle],
- [c_11_fl_M_act_muscle],
- [ c_0_fv_M_muscle],
- [ c_1_fv_M_muscle],
- [ c_2_fv_M_muscle],
- [ c_3_fv_M_muscle]])
- >>> elastic_tendon_muscle.rhs()
- Matrix([
- [v_M_max*FiberForceVelocityInverseDeGroote2016((l_M_opt*...],
- [ ((1/2 - tanh(b_muscle*(-a_muscle(t) + e_muscle(t)))/2)*(3*...]])
- It is strongly recommended to use the alternate ``with_defaults``
- constructor when creating an instance because this will ensure that the
- published constants are used in the musculotendon characteristic curves.
- >>> elastic_tendon_muscle = MusculotendonDeGroote2016.with_defaults(
- ... 'muscle',
- ... pathway,
- ... activation,
- ... musculotendon_dynamics=MusculotendonFormulation.FIBER_LENGTH_EXPLICIT,
- ... tendon_slack_length=l_T_slack,
- ... peak_isometric_force=F_M_max,
- ... optimal_fiber_length=l_M_opt,
- ... )
- >>> elastic_tendon_muscle.x
- Matrix([
- [l_M_tilde_muscle(t)],
- [ a_muscle(t)]])
- >>> elastic_tendon_muscle.r
- Matrix([[e_muscle(t)]])
- >>> elastic_tendon_muscle.p
- Matrix([
- [ l_T_slack],
- [ F_M_max],
- [ l_M_opt],
- [tau_a_muscle],
- [tau_d_muscle],
- [ b_muscle]])
- Parameters
- ==========
- name : str
- The name identifier associated with the musculotendon. This name is used
- as a suffix when automatically generated symbols are instantiated. It
- must be a string of nonzero length.
- pathway : PathwayBase
- The pathway that the actuator follows. This must be an instance of a
- concrete subclass of ``PathwayBase``, e.g. ``LinearPathway``.
- activation_dynamics : ActivationBase
- The activation dynamics that will be modeled within the musculotendon.
- This must be an instance of a concrete subclass of ``ActivationBase``,
- e.g. ``FirstOrderActivationDeGroote2016``.
- musculotendon_dynamics : MusculotendonFormulation | int
- The formulation of musculotendon dynamics that should be used
- internally, i.e. rigid or elastic tendon model, the choice of
- musculotendon state etc. This must be a member of the integer
- enumeration ``MusculotendonFormulation`` or an integer that can be cast
- to a member. To use a rigid tendon formulation, set this to
- ``MusculotendonFormulation.RIGID_TENDON`` (or the integer value ``0``,
- which will be cast to the enumeration member). There are four possible
- formulations for an elastic tendon model. To use an explicit formulation
- with the fiber length as the state, set this to
- ``MusculotendonFormulation.FIBER_LENGTH_EXPLICIT`` (or the integer value
- ``1``). To use an explicit formulation with the tendon force as the
- state, set this to ``MusculotendonFormulation.TENDON_FORCE_EXPLICIT``
- (or the integer value ``2``). To use an implicit formulation with the
- fiber length as the state, set this to
- ``MusculotendonFormulation.FIBER_LENGTH_IMPLICIT`` (or the integer value
- ``3``). To use an implicit formulation with the tendon force as the
- state, set this to ``MusculotendonFormulation.TENDON_FORCE_IMPLICIT``
- (or the integer value ``4``). The default is
- ``MusculotendonFormulation.RIGID_TENDON``, which corresponds to a rigid
- tendon formulation.
- tendon_slack_length : Expr | None
- The length of the tendon when the musculotendon is in its unloaded
- state. In a rigid tendon model the tendon length is the tendon slack
- length. In all musculotendon models, tendon slack length is used to
- normalize tendon length to give
- :math:`\tilde{l}^T = \frac{l^T}{l^T_{slack}}`.
- peak_isometric_force : Expr | None
- The maximum force that the muscle fiber can produce when it is
- undergoing an isometric contraction (no lengthening velocity). In all
- musculotendon models, peak isometric force is used to normalized tendon
- and muscle fiber force to give
- :math:`\tilde{F}^T = \frac{F^T}{F^M_{max}}`.
- optimal_fiber_length : Expr | None
- The muscle fiber length at which the muscle fibers produce no passive
- force and their maximum active force. In all musculotendon models,
- optimal fiber length is used to normalize muscle fiber length to give
- :math:`\tilde{l}^M = \frac{l^M}{l^M_{opt}}`.
- maximal_fiber_velocity : Expr | None
- The fiber velocity at which, during muscle fiber shortening, the muscle
- fibers are unable to produce any active force. In all musculotendon
- models, maximal fiber velocity is used to normalize muscle fiber
- extension velocity to give :math:`\tilde{v}^M = \frac{v^M}{v^M_{max}}`.
- optimal_pennation_angle : Expr | None
- The pennation angle when muscle fiber length equals the optimal fiber
- length.
- fiber_damping_coefficient : Expr | None
- The coefficient of damping to be used in the damping element in the
- muscle fiber model.
- with_defaults : bool
- Whether ``with_defaults`` alternate constructors should be used when
- automatically constructing child classes. Default is ``False``.
- References
- ==========
- .. [1] De Groote, F., Kinney, A. L., Rao, A. V., & Fregly, B. J., Evaluation
- of direct collocation optimal control problem formulations for
- solving the muscle redundancy problem, Annals of biomedical
- engineering, 44(10), (2016) pp. 2922-2936
- """
- curves = CharacteristicCurveCollection(
- tendon_force_length=TendonForceLengthDeGroote2016,
- tendon_force_length_inverse=TendonForceLengthInverseDeGroote2016,
- fiber_force_length_passive=FiberForceLengthPassiveDeGroote2016,
- fiber_force_length_passive_inverse=FiberForceLengthPassiveInverseDeGroote2016,
- fiber_force_length_active=FiberForceLengthActiveDeGroote2016,
- fiber_force_velocity=FiberForceVelocityDeGroote2016,
- fiber_force_velocity_inverse=FiberForceVelocityInverseDeGroote2016,
- )
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