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- """Test functions for 1D array set operations.
- """
- import numpy as np
- from numpy import (
- ediff1d, intersect1d, setxor1d, union1d, setdiff1d, unique, isin
- )
- from numpy.exceptions import AxisError
- from numpy.testing import (assert_array_equal, assert_equal,
- assert_raises, assert_raises_regex)
- import pytest
- class TestSetOps:
- def test_intersect1d(self):
- # unique inputs
- a = np.array([5, 7, 1, 2])
- b = np.array([2, 4, 3, 1, 5])
- ec = np.array([1, 2, 5])
- c = intersect1d(a, b, assume_unique=True)
- assert_array_equal(c, ec)
- # non-unique inputs
- a = np.array([5, 5, 7, 1, 2])
- b = np.array([2, 1, 4, 3, 3, 1, 5])
- ed = np.array([1, 2, 5])
- c = intersect1d(a, b)
- assert_array_equal(c, ed)
- assert_array_equal([], intersect1d([], []))
- def test_intersect1d_array_like(self):
- # See gh-11772
- class Test:
- def __array__(self, dtype=None, copy=None):
- return np.arange(3)
- a = Test()
- res = intersect1d(a, a)
- assert_array_equal(res, a)
- res = intersect1d([1, 2, 3], [1, 2, 3])
- assert_array_equal(res, [1, 2, 3])
- def test_intersect1d_indices(self):
- # unique inputs
- a = np.array([1, 2, 3, 4])
- b = np.array([2, 1, 4, 6])
- c, i1, i2 = intersect1d(a, b, assume_unique=True, return_indices=True)
- ee = np.array([1, 2, 4])
- assert_array_equal(c, ee)
- assert_array_equal(a[i1], ee)
- assert_array_equal(b[i2], ee)
- # non-unique inputs
- a = np.array([1, 2, 2, 3, 4, 3, 2])
- b = np.array([1, 8, 4, 2, 2, 3, 2, 3])
- c, i1, i2 = intersect1d(a, b, return_indices=True)
- ef = np.array([1, 2, 3, 4])
- assert_array_equal(c, ef)
- assert_array_equal(a[i1], ef)
- assert_array_equal(b[i2], ef)
- # non1d, unique inputs
- a = np.array([[2, 4, 5, 6], [7, 8, 1, 15]])
- b = np.array([[3, 2, 7, 6], [10, 12, 8, 9]])
- c, i1, i2 = intersect1d(a, b, assume_unique=True, return_indices=True)
- ui1 = np.unravel_index(i1, a.shape)
- ui2 = np.unravel_index(i2, b.shape)
- ea = np.array([2, 6, 7, 8])
- assert_array_equal(ea, a[ui1])
- assert_array_equal(ea, b[ui2])
- # non1d, not assumed to be uniqueinputs
- a = np.array([[2, 4, 5, 6, 6], [4, 7, 8, 7, 2]])
- b = np.array([[3, 2, 7, 7], [10, 12, 8, 7]])
- c, i1, i2 = intersect1d(a, b, return_indices=True)
- ui1 = np.unravel_index(i1, a.shape)
- ui2 = np.unravel_index(i2, b.shape)
- ea = np.array([2, 7, 8])
- assert_array_equal(ea, a[ui1])
- assert_array_equal(ea, b[ui2])
- def test_setxor1d(self):
- a = np.array([5, 7, 1, 2])
- b = np.array([2, 4, 3, 1, 5])
- ec = np.array([3, 4, 7])
- c = setxor1d(a, b)
- assert_array_equal(c, ec)
- a = np.array([1, 2, 3])
- b = np.array([6, 5, 4])
- ec = np.array([1, 2, 3, 4, 5, 6])
- c = setxor1d(a, b)
- assert_array_equal(c, ec)
- a = np.array([1, 8, 2, 3])
- b = np.array([6, 5, 4, 8])
- ec = np.array([1, 2, 3, 4, 5, 6])
- c = setxor1d(a, b)
- assert_array_equal(c, ec)
- assert_array_equal([], setxor1d([], []))
- def test_setxor1d_unique(self):
- a = np.array([1, 8, 2, 3])
- b = np.array([6, 5, 4, 8])
- ec = np.array([1, 2, 3, 4, 5, 6])
- c = setxor1d(a, b, assume_unique=True)
- assert_array_equal(c, ec)
- a = np.array([[1], [8], [2], [3]])
- b = np.array([[6, 5], [4, 8]])
- ec = np.array([1, 2, 3, 4, 5, 6])
- c = setxor1d(a, b, assume_unique=True)
- assert_array_equal(c, ec)
- def test_ediff1d(self):
- zero_elem = np.array([])
- one_elem = np.array([1])
- two_elem = np.array([1, 2])
- assert_array_equal([], ediff1d(zero_elem))
- assert_array_equal([0], ediff1d(zero_elem, to_begin=0))
- assert_array_equal([0], ediff1d(zero_elem, to_end=0))
- assert_array_equal([-1, 0], ediff1d(zero_elem, to_begin=-1, to_end=0))
- assert_array_equal([], ediff1d(one_elem))
- assert_array_equal([1], ediff1d(two_elem))
- assert_array_equal([7, 1, 9], ediff1d(two_elem, to_begin=7, to_end=9))
- assert_array_equal([5, 6, 1, 7, 8],
- ediff1d(two_elem, to_begin=[5, 6], to_end=[7, 8]))
- assert_array_equal([1, 9], ediff1d(two_elem, to_end=9))
- assert_array_equal([1, 7, 8], ediff1d(two_elem, to_end=[7, 8]))
- assert_array_equal([7, 1], ediff1d(two_elem, to_begin=7))
- assert_array_equal([5, 6, 1], ediff1d(two_elem, to_begin=[5, 6]))
- @pytest.mark.parametrize("ary, prepend, append, expected", [
- # should fail because trying to cast
- # np.nan standard floating point value
- # into an integer array:
- (np.array([1, 2, 3], dtype=np.int64),
- None,
- np.nan,
- 'to_end'),
- # should fail because attempting
- # to downcast to int type:
- (np.array([1, 2, 3], dtype=np.int64),
- np.array([5, 7, 2], dtype=np.float32),
- None,
- 'to_begin'),
- # should fail because attempting to cast
- # two special floating point values
- # to integers (on both sides of ary),
- # `to_begin` is in the error message as the impl checks this first:
- (np.array([1., 3., 9.], dtype=np.int8),
- np.nan,
- np.nan,
- 'to_begin'),
- ])
- def test_ediff1d_forbidden_type_casts(self, ary, prepend, append, expected):
- # verify resolution of gh-11490
- # specifically, raise an appropriate
- # Exception when attempting to append or
- # prepend with an incompatible type
- msg = 'dtype of `{}` must be compatible'.format(expected)
- with assert_raises_regex(TypeError, msg):
- ediff1d(ary=ary,
- to_end=append,
- to_begin=prepend)
- @pytest.mark.parametrize(
- "ary,prepend,append,expected",
- [
- (np.array([1, 2, 3], dtype=np.int16),
- 2**16, # will be cast to int16 under same kind rule.
- 2**16 + 4,
- np.array([0, 1, 1, 4], dtype=np.int16)),
- (np.array([1, 2, 3], dtype=np.float32),
- np.array([5], dtype=np.float64),
- None,
- np.array([5, 1, 1], dtype=np.float32)),
- (np.array([1, 2, 3], dtype=np.int32),
- 0,
- 0,
- np.array([0, 1, 1, 0], dtype=np.int32)),
- (np.array([1, 2, 3], dtype=np.int64),
- 3,
- -9,
- np.array([3, 1, 1, -9], dtype=np.int64)),
- ]
- )
- def test_ediff1d_scalar_handling(self,
- ary,
- prepend,
- append,
- expected):
- # maintain backwards-compatibility
- # of scalar prepend / append behavior
- # in ediff1d following fix for gh-11490
- actual = np.ediff1d(ary=ary,
- to_end=append,
- to_begin=prepend)
- assert_equal(actual, expected)
- assert actual.dtype == expected.dtype
- @pytest.mark.parametrize("kind", [None, "sort", "table"])
- def test_isin(self, kind):
- def _isin_slow(a, b):
- b = np.asarray(b).flatten().tolist()
- return a in b
- isin_slow = np.vectorize(_isin_slow, otypes=[bool], excluded={1})
- def assert_isin_equal(a, b):
- x = isin(a, b, kind=kind)
- y = isin_slow(a, b)
- assert_array_equal(x, y)
- # multidimensional arrays in both arguments
- a = np.arange(24).reshape([2, 3, 4])
- b = np.array([[10, 20, 30], [0, 1, 3], [11, 22, 33]])
- assert_isin_equal(a, b)
- # array-likes as both arguments
- c = [(9, 8), (7, 6)]
- d = (9, 7)
- assert_isin_equal(c, d)
- # zero-d array:
- f = np.array(3)
- assert_isin_equal(f, b)
- assert_isin_equal(a, f)
- assert_isin_equal(f, f)
- # scalar:
- assert_isin_equal(5, b)
- assert_isin_equal(a, 6)
- assert_isin_equal(5, 6)
- # empty array-like:
- if kind != "table":
- # An empty list will become float64,
- # which is invalid for kind="table"
- x = []
- assert_isin_equal(x, b)
- assert_isin_equal(a, x)
- assert_isin_equal(x, x)
- # empty array with various types:
- for dtype in [bool, np.int64, np.float64]:
- if kind == "table" and dtype == np.float64:
- continue
- if dtype in {np.int64, np.float64}:
- ar = np.array([10, 20, 30], dtype=dtype)
- elif dtype in {bool}:
- ar = np.array([True, False, False])
- empty_array = np.array([], dtype=dtype)
- assert_isin_equal(empty_array, ar)
- assert_isin_equal(ar, empty_array)
- assert_isin_equal(empty_array, empty_array)
- @pytest.mark.parametrize("kind", [None, "sort", "table"])
- def test_isin_additional(self, kind):
- # we use two different sizes for the b array here to test the
- # two different paths in isin().
- for mult in (1, 10):
- # One check without np.array to make sure lists are handled correct
- a = [5, 7, 1, 2]
- b = [2, 4, 3, 1, 5] * mult
- ec = np.array([True, False, True, True])
- c = isin(a, b, assume_unique=True, kind=kind)
- assert_array_equal(c, ec)
- a[0] = 8
- ec = np.array([False, False, True, True])
- c = isin(a, b, assume_unique=True, kind=kind)
- assert_array_equal(c, ec)
- a[0], a[3] = 4, 8
- ec = np.array([True, False, True, False])
- c = isin(a, b, assume_unique=True, kind=kind)
- assert_array_equal(c, ec)
- a = np.array([5, 4, 5, 3, 4, 4, 3, 4, 3, 5, 2, 1, 5, 5])
- b = [2, 3, 4] * mult
- ec = [False, True, False, True, True, True, True, True, True,
- False, True, False, False, False]
- c = isin(a, b, kind=kind)
- assert_array_equal(c, ec)
- b = b + [5, 5, 4] * mult
- ec = [True, True, True, True, True, True, True, True, True, True,
- True, False, True, True]
- c = isin(a, b, kind=kind)
- assert_array_equal(c, ec)
- a = np.array([5, 7, 1, 2])
- b = np.array([2, 4, 3, 1, 5] * mult)
- ec = np.array([True, False, True, True])
- c = isin(a, b, kind=kind)
- assert_array_equal(c, ec)
- a = np.array([5, 7, 1, 1, 2])
- b = np.array([2, 4, 3, 3, 1, 5] * mult)
- ec = np.array([True, False, True, True, True])
- c = isin(a, b, kind=kind)
- assert_array_equal(c, ec)
- a = np.array([5, 5])
- b = np.array([2, 2] * mult)
- ec = np.array([False, False])
- c = isin(a, b, kind=kind)
- assert_array_equal(c, ec)
- a = np.array([5])
- b = np.array([2])
- ec = np.array([False])
- c = isin(a, b, kind=kind)
- assert_array_equal(c, ec)
- if kind in {None, "sort"}:
- assert_array_equal(isin([], [], kind=kind), [])
- def test_isin_char_array(self):
- a = np.array(['a', 'b', 'c', 'd', 'e', 'c', 'e', 'b'])
- b = np.array(['a', 'c'])
- ec = np.array([True, False, True, False, False, True, False, False])
- c = isin(a, b)
- assert_array_equal(c, ec)
- @pytest.mark.parametrize("kind", [None, "sort", "table"])
- def test_isin_invert(self, kind):
- "Test isin's invert parameter"
- # We use two different sizes for the b array here to test the
- # two different paths in isin().
- for mult in (1, 10):
- a = np.array([5, 4, 5, 3, 4, 4, 3, 4, 3, 5, 2, 1, 5, 5])
- b = [2, 3, 4] * mult
- assert_array_equal(np.invert(isin(a, b, kind=kind)),
- isin(a, b, invert=True, kind=kind))
- # float:
- if kind in {None, "sort"}:
- for mult in (1, 10):
- a = np.array([5, 4, 5, 3, 4, 4, 3, 4, 3, 5, 2, 1, 5, 5],
- dtype=np.float32)
- b = [2, 3, 4] * mult
- b = np.array(b, dtype=np.float32)
- assert_array_equal(np.invert(isin(a, b, kind=kind)),
- isin(a, b, invert=True, kind=kind))
- def test_isin_hit_alternate_algorithm(self):
- """Hit the standard isin code with integers"""
- # Need extreme range to hit standard code
- # This hits it without the use of kind='table'
- a = np.array([5, 4, 5, 3, 4, 4, 1e9], dtype=np.int64)
- b = np.array([2, 3, 4, 1e9], dtype=np.int64)
- expected = np.array([0, 1, 0, 1, 1, 1, 1], dtype=bool)
- assert_array_equal(expected, isin(a, b))
- assert_array_equal(np.invert(expected), isin(a, b, invert=True))
- a = np.array([5, 7, 1, 2], dtype=np.int64)
- b = np.array([2, 4, 3, 1, 5, 1e9], dtype=np.int64)
- ec = np.array([True, False, True, True])
- c = isin(a, b, assume_unique=True)
- assert_array_equal(c, ec)
- @pytest.mark.parametrize("kind", [None, "sort", "table"])
- def test_isin_boolean(self, kind):
- """Test that isin works for boolean input"""
- a = np.array([True, False])
- b = np.array([False, False, False])
- expected = np.array([False, True])
- assert_array_equal(expected,
- isin(a, b, kind=kind))
- assert_array_equal(np.invert(expected),
- isin(a, b, invert=True, kind=kind))
- @pytest.mark.parametrize("kind", [None, "sort"])
- def test_isin_timedelta(self, kind):
- """Test that isin works for timedelta input"""
- rstate = np.random.RandomState(0)
- a = rstate.randint(0, 100, size=10)
- b = rstate.randint(0, 100, size=10)
- truth = isin(a, b)
- a_timedelta = a.astype("timedelta64[s]")
- b_timedelta = b.astype("timedelta64[s]")
- assert_array_equal(truth, isin(a_timedelta, b_timedelta, kind=kind))
- def test_isin_table_timedelta_fails(self):
- a = np.array([0, 1, 2], dtype="timedelta64[s]")
- b = a
- # Make sure it raises a value error:
- with pytest.raises(ValueError):
- isin(a, b, kind="table")
- @pytest.mark.parametrize(
- "dtype1,dtype2",
- [
- (np.int8, np.int16),
- (np.int16, np.int8),
- (np.uint8, np.uint16),
- (np.uint16, np.uint8),
- (np.uint8, np.int16),
- (np.int16, np.uint8),
- (np.uint64, np.int64),
- ]
- )
- @pytest.mark.parametrize("kind", [None, "sort", "table"])
- def test_isin_mixed_dtype(self, dtype1, dtype2, kind):
- """Test that isin works as expected for mixed dtype input."""
- is_dtype2_signed = np.issubdtype(dtype2, np.signedinteger)
- ar1 = np.array([0, 0, 1, 1], dtype=dtype1)
- if is_dtype2_signed:
- ar2 = np.array([-128, 0, 127], dtype=dtype2)
- else:
- ar2 = np.array([127, 0, 255], dtype=dtype2)
- expected = np.array([True, True, False, False])
- expect_failure = kind == "table" and (
- dtype1 == np.int16 and dtype2 == np.int8)
- if expect_failure:
- with pytest.raises(RuntimeError, match="exceed the maximum"):
- isin(ar1, ar2, kind=kind)
- else:
- assert_array_equal(isin(ar1, ar2, kind=kind), expected)
- @pytest.mark.parametrize("data", [
- np.array([2**63, 2**63+1], dtype=np.uint64),
- np.array([-2**62, -2**62-1], dtype=np.int64),
- ])
- @pytest.mark.parametrize("kind", [None, "sort", "table"])
- def test_isin_mixed_huge_vals(self, kind, data):
- """Test values outside intp range (negative ones if 32bit system)"""
- query = data[1]
- res = np.isin(data, query, kind=kind)
- assert_array_equal(res, [False, True])
- # Also check that nothing weird happens for values can't possibly
- # in range.
- data = data.astype(np.int32) # clearly different values
- res = np.isin(data, query, kind=kind)
- assert_array_equal(res, [False, False])
- @pytest.mark.parametrize("kind", [None, "sort", "table"])
- def test_isin_mixed_boolean(self, kind):
- """Test that isin works as expected for bool/int input."""
- for dtype in np.typecodes["AllInteger"]:
- a = np.array([True, False, False], dtype=bool)
- b = np.array([0, 0, 0, 0], dtype=dtype)
- expected = np.array([False, True, True], dtype=bool)
- assert_array_equal(isin(a, b, kind=kind), expected)
- a, b = b, a
- expected = np.array([True, True, True, True], dtype=bool)
- assert_array_equal(isin(a, b, kind=kind), expected)
- def test_isin_first_array_is_object(self):
- ar1 = [None]
- ar2 = np.array([1]*10)
- expected = np.array([False])
- result = np.isin(ar1, ar2)
- assert_array_equal(result, expected)
- def test_isin_second_array_is_object(self):
- ar1 = 1
- ar2 = np.array([None]*10)
- expected = np.array([False])
- result = np.isin(ar1, ar2)
- assert_array_equal(result, expected)
- def test_isin_both_arrays_are_object(self):
- ar1 = [None]
- ar2 = np.array([None]*10)
- expected = np.array([True])
- result = np.isin(ar1, ar2)
- assert_array_equal(result, expected)
- def test_isin_both_arrays_have_structured_dtype(self):
- # Test arrays of a structured data type containing an integer field
- # and a field of dtype `object` allowing for arbitrary Python objects
- dt = np.dtype([('field1', int), ('field2', object)])
- ar1 = np.array([(1, None)], dtype=dt)
- ar2 = np.array([(1, None)]*10, dtype=dt)
- expected = np.array([True])
- result = np.isin(ar1, ar2)
- assert_array_equal(result, expected)
- def test_isin_with_arrays_containing_tuples(self):
- ar1 = np.array([(1,), 2], dtype=object)
- ar2 = np.array([(1,), 2], dtype=object)
- expected = np.array([True, True])
- result = np.isin(ar1, ar2)
- assert_array_equal(result, expected)
- result = np.isin(ar1, ar2, invert=True)
- assert_array_equal(result, np.invert(expected))
- # An integer is added at the end of the array to make sure
- # that the array builder will create the array with tuples
- # and after it's created the integer is removed.
- # There's a bug in the array constructor that doesn't handle
- # tuples properly and adding the integer fixes that.
- ar1 = np.array([(1,), (2, 1), 1], dtype=object)
- ar1 = ar1[:-1]
- ar2 = np.array([(1,), (2, 1), 1], dtype=object)
- ar2 = ar2[:-1]
- expected = np.array([True, True])
- result = np.isin(ar1, ar2)
- assert_array_equal(result, expected)
- result = np.isin(ar1, ar2, invert=True)
- assert_array_equal(result, np.invert(expected))
- ar1 = np.array([(1,), (2, 3), 1], dtype=object)
- ar1 = ar1[:-1]
- ar2 = np.array([(1,), 2], dtype=object)
- expected = np.array([True, False])
- result = np.isin(ar1, ar2)
- assert_array_equal(result, expected)
- result = np.isin(ar1, ar2, invert=True)
- assert_array_equal(result, np.invert(expected))
- def test_isin_errors(self):
- """Test that isin raises expected errors."""
- # Error 1: `kind` is not one of 'sort' 'table' or None.
- ar1 = np.array([1, 2, 3, 4, 5])
- ar2 = np.array([2, 4, 6, 8, 10])
- assert_raises(ValueError, isin, ar1, ar2, kind='quicksort')
- # Error 2: `kind="table"` does not work for non-integral arrays.
- obj_ar1 = np.array([1, 'a', 3, 'b', 5], dtype=object)
- obj_ar2 = np.array([1, 'a', 3, 'b', 5], dtype=object)
- assert_raises(ValueError, isin, obj_ar1, obj_ar2, kind='table')
- for dtype in [np.int32, np.int64]:
- ar1 = np.array([-1, 2, 3, 4, 5], dtype=dtype)
- # The range of this array will overflow:
- overflow_ar2 = np.array([-1, np.iinfo(dtype).max], dtype=dtype)
- # Error 3: `kind="table"` will trigger a runtime error
- # if there is an integer overflow expected when computing the
- # range of ar2
- assert_raises(
- RuntimeError,
- isin, ar1, overflow_ar2, kind='table'
- )
- # Non-error: `kind=None` will *not* trigger a runtime error
- # if there is an integer overflow, it will switch to
- # the `sort` algorithm.
- result = np.isin(ar1, overflow_ar2, kind=None)
- assert_array_equal(result, [True] + [False] * 4)
- result = np.isin(ar1, overflow_ar2, kind='sort')
- assert_array_equal(result, [True] + [False] * 4)
- def test_union1d(self):
- a = np.array([5, 4, 7, 1, 2])
- b = np.array([2, 4, 3, 3, 2, 1, 5])
- ec = np.array([1, 2, 3, 4, 5, 7])
- c = union1d(a, b)
- assert_array_equal(c, ec)
- # Tests gh-10340, arguments to union1d should be
- # flattened if they are not already 1D
- x = np.array([[0, 1, 2], [3, 4, 5]])
- y = np.array([0, 1, 2, 3, 4])
- ez = np.array([0, 1, 2, 3, 4, 5])
- z = union1d(x, y)
- assert_array_equal(z, ez)
- assert_array_equal([], union1d([], []))
- def test_setdiff1d(self):
- a = np.array([6, 5, 4, 7, 1, 2, 7, 4])
- b = np.array([2, 4, 3, 3, 2, 1, 5])
- ec = np.array([6, 7])
- c = setdiff1d(a, b)
- assert_array_equal(c, ec)
- a = np.arange(21)
- b = np.arange(19)
- ec = np.array([19, 20])
- c = setdiff1d(a, b)
- assert_array_equal(c, ec)
- assert_array_equal([], setdiff1d([], []))
- a = np.array((), np.uint32)
- assert_equal(setdiff1d(a, []).dtype, np.uint32)
- def test_setdiff1d_unique(self):
- a = np.array([3, 2, 1])
- b = np.array([7, 5, 2])
- expected = np.array([3, 1])
- actual = setdiff1d(a, b, assume_unique=True)
- assert_equal(actual, expected)
- def test_setdiff1d_char_array(self):
- a = np.array(['a', 'b', 'c'])
- b = np.array(['a', 'b', 's'])
- assert_array_equal(setdiff1d(a, b), np.array(['c']))
- def test_manyways(self):
- a = np.array([5, 7, 1, 2, 8])
- b = np.array([9, 8, 2, 4, 3, 1, 5])
- c1 = setxor1d(a, b)
- aux1 = intersect1d(a, b)
- aux2 = union1d(a, b)
- c2 = setdiff1d(aux2, aux1)
- assert_array_equal(c1, c2)
- class TestUnique:
- def test_unique_1d(self):
- def check_all(a, b, i1, i2, c, dt):
- base_msg = 'check {0} failed for type {1}'
- msg = base_msg.format('values', dt)
- v = unique(a)
- assert_array_equal(v, b, msg)
- msg = base_msg.format('return_index', dt)
- v, j = unique(a, True, False, False)
- assert_array_equal(v, b, msg)
- assert_array_equal(j, i1, msg)
- msg = base_msg.format('return_inverse', dt)
- v, j = unique(a, False, True, False)
- assert_array_equal(v, b, msg)
- assert_array_equal(j, i2, msg)
- msg = base_msg.format('return_counts', dt)
- v, j = unique(a, False, False, True)
- assert_array_equal(v, b, msg)
- assert_array_equal(j, c, msg)
- msg = base_msg.format('return_index and return_inverse', dt)
- v, j1, j2 = unique(a, True, True, False)
- assert_array_equal(v, b, msg)
- assert_array_equal(j1, i1, msg)
- assert_array_equal(j2, i2, msg)
- msg = base_msg.format('return_index and return_counts', dt)
- v, j1, j2 = unique(a, True, False, True)
- assert_array_equal(v, b, msg)
- assert_array_equal(j1, i1, msg)
- assert_array_equal(j2, c, msg)
- msg = base_msg.format('return_inverse and return_counts', dt)
- v, j1, j2 = unique(a, False, True, True)
- assert_array_equal(v, b, msg)
- assert_array_equal(j1, i2, msg)
- assert_array_equal(j2, c, msg)
- msg = base_msg.format(('return_index, return_inverse '
- 'and return_counts'), dt)
- v, j1, j2, j3 = unique(a, True, True, True)
- assert_array_equal(v, b, msg)
- assert_array_equal(j1, i1, msg)
- assert_array_equal(j2, i2, msg)
- assert_array_equal(j3, c, msg)
- a = [5, 7, 1, 2, 1, 5, 7]*10
- b = [1, 2, 5, 7]
- i1 = [2, 3, 0, 1]
- i2 = [2, 3, 0, 1, 0, 2, 3]*10
- c = np.multiply([2, 1, 2, 2], 10)
- # test for numeric arrays
- types = []
- types.extend(np.typecodes['AllInteger'])
- types.extend(np.typecodes['AllFloat'])
- types.append('datetime64[D]')
- types.append('timedelta64[D]')
- for dt in types:
- aa = np.array(a, dt)
- bb = np.array(b, dt)
- check_all(aa, bb, i1, i2, c, dt)
- # test for object arrays
- dt = 'O'
- aa = np.empty(len(a), dt)
- aa[:] = a
- bb = np.empty(len(b), dt)
- bb[:] = b
- check_all(aa, bb, i1, i2, c, dt)
- # test for structured arrays
- dt = [('', 'i'), ('', 'i')]
- aa = np.array(list(zip(a, a)), dt)
- bb = np.array(list(zip(b, b)), dt)
- check_all(aa, bb, i1, i2, c, dt)
- # test for ticket #2799
- aa = [1. + 0.j, 1 - 1.j, 1]
- assert_array_equal(np.unique(aa), [1. - 1.j, 1. + 0.j])
- # test for ticket #4785
- a = [(1, 2), (1, 2), (2, 3)]
- unq = [1, 2, 3]
- inv = [[0, 1], [0, 1], [1, 2]]
- a1 = unique(a)
- assert_array_equal(a1, unq)
- a2, a2_inv = unique(a, return_inverse=True)
- assert_array_equal(a2, unq)
- assert_array_equal(a2_inv, inv)
- # test for chararrays with return_inverse (gh-5099)
- a = np.char.chararray(5)
- a[...] = ''
- a2, a2_inv = np.unique(a, return_inverse=True)
- assert_array_equal(a2_inv, np.zeros(5))
- # test for ticket #9137
- a = []
- a1_idx = np.unique(a, return_index=True)[1]
- a2_inv = np.unique(a, return_inverse=True)[1]
- a3_idx, a3_inv = np.unique(a, return_index=True,
- return_inverse=True)[1:]
- assert_equal(a1_idx.dtype, np.intp)
- assert_equal(a2_inv.dtype, np.intp)
- assert_equal(a3_idx.dtype, np.intp)
- assert_equal(a3_inv.dtype, np.intp)
- # test for ticket 2111 - float
- a = [2.0, np.nan, 1.0, np.nan]
- ua = [1.0, 2.0, np.nan]
- ua_idx = [2, 0, 1]
- ua_inv = [1, 2, 0, 2]
- ua_cnt = [1, 1, 2]
- assert_equal(np.unique(a), ua)
- assert_equal(np.unique(a, return_index=True), (ua, ua_idx))
- assert_equal(np.unique(a, return_inverse=True), (ua, ua_inv))
- assert_equal(np.unique(a, return_counts=True), (ua, ua_cnt))
- # test for ticket 2111 - complex
- a = [2.0-1j, np.nan, 1.0+1j, complex(0.0, np.nan), complex(1.0, np.nan)]
- ua = [1.0+1j, 2.0-1j, complex(0.0, np.nan)]
- ua_idx = [2, 0, 3]
- ua_inv = [1, 2, 0, 2, 2]
- ua_cnt = [1, 1, 3]
- assert_equal(np.unique(a), ua)
- assert_equal(np.unique(a, return_index=True), (ua, ua_idx))
- assert_equal(np.unique(a, return_inverse=True), (ua, ua_inv))
- assert_equal(np.unique(a, return_counts=True), (ua, ua_cnt))
- # test for ticket 2111 - datetime64
- nat = np.datetime64('nat')
- a = [np.datetime64('2020-12-26'), nat, np.datetime64('2020-12-24'), nat]
- ua = [np.datetime64('2020-12-24'), np.datetime64('2020-12-26'), nat]
- ua_idx = [2, 0, 1]
- ua_inv = [1, 2, 0, 2]
- ua_cnt = [1, 1, 2]
- assert_equal(np.unique(a), ua)
- assert_equal(np.unique(a, return_index=True), (ua, ua_idx))
- assert_equal(np.unique(a, return_inverse=True), (ua, ua_inv))
- assert_equal(np.unique(a, return_counts=True), (ua, ua_cnt))
- # test for ticket 2111 - timedelta
- nat = np.timedelta64('nat')
- a = [np.timedelta64(1, 'D'), nat, np.timedelta64(1, 'h'), nat]
- ua = [np.timedelta64(1, 'h'), np.timedelta64(1, 'D'), nat]
- ua_idx = [2, 0, 1]
- ua_inv = [1, 2, 0, 2]
- ua_cnt = [1, 1, 2]
- assert_equal(np.unique(a), ua)
- assert_equal(np.unique(a, return_index=True), (ua, ua_idx))
- assert_equal(np.unique(a, return_inverse=True), (ua, ua_inv))
- assert_equal(np.unique(a, return_counts=True), (ua, ua_cnt))
- # test for gh-19300
- all_nans = [np.nan] * 4
- ua = [np.nan]
- ua_idx = [0]
- ua_inv = [0, 0, 0, 0]
- ua_cnt = [4]
- assert_equal(np.unique(all_nans), ua)
- assert_equal(np.unique(all_nans, return_index=True), (ua, ua_idx))
- assert_equal(np.unique(all_nans, return_inverse=True), (ua, ua_inv))
- assert_equal(np.unique(all_nans, return_counts=True), (ua, ua_cnt))
- def test_unique_axis_errors(self):
- assert_raises(TypeError, self._run_axis_tests, object)
- assert_raises(TypeError, self._run_axis_tests,
- [('a', int), ('b', object)])
- assert_raises(AxisError, unique, np.arange(10), axis=2)
- assert_raises(AxisError, unique, np.arange(10), axis=-2)
- def test_unique_axis_list(self):
- msg = "Unique failed on list of lists"
- inp = [[0, 1, 0], [0, 1, 0]]
- inp_arr = np.asarray(inp)
- assert_array_equal(unique(inp, axis=0), unique(inp_arr, axis=0), msg)
- assert_array_equal(unique(inp, axis=1), unique(inp_arr, axis=1), msg)
- def test_unique_axis(self):
- types = []
- types.extend(np.typecodes['AllInteger'])
- types.extend(np.typecodes['AllFloat'])
- types.append('datetime64[D]')
- types.append('timedelta64[D]')
- types.append([('a', int), ('b', int)])
- types.append([('a', int), ('b', float)])
- for dtype in types:
- self._run_axis_tests(dtype)
- msg = 'Non-bitwise-equal booleans test failed'
- data = np.arange(10, dtype=np.uint8).reshape(-1, 2).view(bool)
- result = np.array([[False, True], [True, True]], dtype=bool)
- assert_array_equal(unique(data, axis=0), result, msg)
- msg = 'Negative zero equality test failed'
- data = np.array([[-0.0, 0.0], [0.0, -0.0], [-0.0, 0.0], [0.0, -0.0]])
- result = np.array([[-0.0, 0.0]])
- assert_array_equal(unique(data, axis=0), result, msg)
- @pytest.mark.parametrize("axis", [0, -1])
- def test_unique_1d_with_axis(self, axis):
- x = np.array([4, 3, 2, 3, 2, 1, 2, 2])
- uniq = unique(x, axis=axis)
- assert_array_equal(uniq, [1, 2, 3, 4])
- @pytest.mark.parametrize("axis", [None, 0, -1])
- def test_unique_inverse_with_axis(self, axis):
- x = np.array([[4, 4, 3], [2, 2, 1], [2, 2, 1], [4, 4, 3]])
- uniq, inv = unique(x, return_inverse=True, axis=axis)
- assert_equal(inv.ndim, x.ndim if axis is None else 1)
- assert_array_equal(x, np.take(uniq, inv, axis=axis))
- def test_unique_axis_zeros(self):
- # issue 15559
- single_zero = np.empty(shape=(2, 0), dtype=np.int8)
- uniq, idx, inv, cnt = unique(single_zero, axis=0, return_index=True,
- return_inverse=True, return_counts=True)
- # there's 1 element of shape (0,) along axis 0
- assert_equal(uniq.dtype, single_zero.dtype)
- assert_array_equal(uniq, np.empty(shape=(1, 0)))
- assert_array_equal(idx, np.array([0]))
- assert_array_equal(inv, np.array([0, 0]))
- assert_array_equal(cnt, np.array([2]))
- # there's 0 elements of shape (2,) along axis 1
- uniq, idx, inv, cnt = unique(single_zero, axis=1, return_index=True,
- return_inverse=True, return_counts=True)
- assert_equal(uniq.dtype, single_zero.dtype)
- assert_array_equal(uniq, np.empty(shape=(2, 0)))
- assert_array_equal(idx, np.array([]))
- assert_array_equal(inv, np.array([]))
- assert_array_equal(cnt, np.array([]))
- # test a "complicated" shape
- shape = (0, 2, 0, 3, 0, 4, 0)
- multiple_zeros = np.empty(shape=shape)
- for axis in range(len(shape)):
- expected_shape = list(shape)
- if shape[axis] == 0:
- expected_shape[axis] = 0
- else:
- expected_shape[axis] = 1
- assert_array_equal(unique(multiple_zeros, axis=axis),
- np.empty(shape=expected_shape))
- def test_unique_masked(self):
- # issue 8664
- x = np.array([64, 0, 1, 2, 3, 63, 63, 0, 0, 0, 1, 2, 0, 63, 0],
- dtype='uint8')
- y = np.ma.masked_equal(x, 0)
- v = np.unique(y)
- v2, i, c = np.unique(y, return_index=True, return_counts=True)
- msg = 'Unique returned different results when asked for index'
- assert_array_equal(v.data, v2.data, msg)
- assert_array_equal(v.mask, v2.mask, msg)
- def test_unique_sort_order_with_axis(self):
- # These tests fail if sorting along axis is done by treating subarrays
- # as unsigned byte strings. See gh-10495.
- fmt = "sort order incorrect for integer type '%s'"
- for dt in 'bhilq':
- a = np.array([[-1], [0]], dt)
- b = np.unique(a, axis=0)
- assert_array_equal(a, b, fmt % dt)
- def _run_axis_tests(self, dtype):
- data = np.array([[0, 1, 0, 0],
- [1, 0, 0, 0],
- [0, 1, 0, 0],
- [1, 0, 0, 0]]).astype(dtype)
- msg = 'Unique with 1d array and axis=0 failed'
- result = np.array([0, 1])
- assert_array_equal(unique(data), result.astype(dtype), msg)
- msg = 'Unique with 2d array and axis=0 failed'
- result = np.array([[0, 1, 0, 0], [1, 0, 0, 0]])
- assert_array_equal(unique(data, axis=0), result.astype(dtype), msg)
- msg = 'Unique with 2d array and axis=1 failed'
- result = np.array([[0, 0, 1], [0, 1, 0], [0, 0, 1], [0, 1, 0]])
- assert_array_equal(unique(data, axis=1), result.astype(dtype), msg)
- msg = 'Unique with 3d array and axis=2 failed'
- data3d = np.array([[[1, 1],
- [1, 0]],
- [[0, 1],
- [0, 0]]]).astype(dtype)
- result = np.take(data3d, [1, 0], axis=2)
- assert_array_equal(unique(data3d, axis=2), result, msg)
- uniq, idx, inv, cnt = unique(data, axis=0, return_index=True,
- return_inverse=True, return_counts=True)
- msg = "Unique's return_index=True failed with axis=0"
- assert_array_equal(data[idx], uniq, msg)
- msg = "Unique's return_inverse=True failed with axis=0"
- assert_array_equal(np.take(uniq, inv, axis=0), data)
- msg = "Unique's return_counts=True failed with axis=0"
- assert_array_equal(cnt, np.array([2, 2]), msg)
- uniq, idx, inv, cnt = unique(data, axis=1, return_index=True,
- return_inverse=True, return_counts=True)
- msg = "Unique's return_index=True failed with axis=1"
- assert_array_equal(data[:, idx], uniq)
- msg = "Unique's return_inverse=True failed with axis=1"
- assert_array_equal(np.take(uniq, inv, axis=1), data)
- msg = "Unique's return_counts=True failed with axis=1"
- assert_array_equal(cnt, np.array([2, 1, 1]), msg)
- def test_unique_nanequals(self):
- # issue 20326
- a = np.array([1, 1, np.nan, np.nan, np.nan])
- unq = np.unique(a)
- not_unq = np.unique(a, equal_nan=False)
- assert_array_equal(unq, np.array([1, np.nan]))
- assert_array_equal(not_unq, np.array([1, np.nan, np.nan, np.nan]))
- def test_unique_array_api_functions(self):
- arr = np.array([np.nan, 1, 4, 1, 3, 4, np.nan, 5, 1])
- for res_unique_array_api, res_unique in [
- (
- np.unique_values(arr),
- np.unique(arr, equal_nan=False)
- ),
- (
- np.unique_counts(arr),
- np.unique(arr, return_counts=True, equal_nan=False)
- ),
- (
- np.unique_inverse(arr),
- np.unique(arr, return_inverse=True, equal_nan=False)
- ),
- (
- np.unique_all(arr),
- np.unique(
- arr,
- return_index=True,
- return_inverse=True,
- return_counts=True,
- equal_nan=False
- )
- )
- ]:
- assert len(res_unique_array_api) == len(res_unique)
- for actual, expected in zip(res_unique_array_api, res_unique):
- assert_array_equal(actual, expected)
- def test_unique_inverse_shape(self):
- # Regression test for https://github.com/numpy/numpy/issues/25552
- arr = np.array([[1, 2, 3], [2, 3, 1]])
- expected_values, expected_inverse = np.unique(arr, return_inverse=True)
- expected_inverse = expected_inverse.reshape(arr.shape)
- for func in np.unique_inverse, np.unique_all:
- result = func(arr)
- assert_array_equal(expected_values, result.values)
- assert_array_equal(expected_inverse, result.inverse_indices)
- assert_array_equal(arr, result.values[result.inverse_indices])
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